Strain Fitness in Sphingobium sp. HT1-2 around GFF3948

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,985,814	-		GFF3946	0.81	+1.0
3,985,834	+		GFF3946	0.81	+1.0
3,985,843	-		GFF3946	0.82	+0.4
3,985,844	+		GFF3946	0.82	+0.9
3,985,850	+		GFF3946	0.82	+0.5
3,985,850	+		GFF3946	0.82	+1.3
3,985,850	+		GFF3946	0.82	+0.2
3,985,850	+		GFF3946	0.82	-1.9
3,985,850	+		GFF3946	0.82	+0.0
3,985,850	+		GFF3946	0.82	-0.1
3,985,850	+		GFF3946	0.82	-0.4
3,985,850	+		GFF3946	0.82	-2.7
3,985,850	+		GFF3946	0.82	+0.5
3,985,858	-		GFF3946	0.82	+0.1
3,985,858	-		GFF3946	0.82	-2.1
3,985,858	-		GFF3946	0.82	+0.5
3,985,858	-		GFF3946	0.82	-1.4
3,985,883	-		GFF3946	0.83	-1.5
3,985,883	-		GFF3946	0.83	-0.6
3,985,883	-		GFF3946	0.83	+0.6
3,985,885	+		GFF3946	0.83	-1.7
3,985,885	+		GFF3946	0.83	+1.1
3,985,885	+		GFF3946	0.83	-0.2
3,985,885	+		GFF3946	0.83	-1.0
3,985,885	+		GFF3946	0.83	+0.6
3,985,893	-		GFF3946	0.83	-1.4
3,985,893	-		GFF3946	0.83	+0.2
3,985,893	-		GFF3946	0.83	-2.0
3,985,893	-		GFF3946	0.83	-2.6
3,985,921	+		GFF3946	0.84	+0.3
3,985,929	-		GFF3946	0.85	-1.1
3,985,939	-		GFF3946	0.85	-1.0
3,985,959	-		GFF3946	0.86	+0.3
3,985,981	-		GFF3946	0.86	-1.7
3,985,985	+		GFF3946	0.87	-0.3
3,985,985	+		GFF3946	0.87	+0.9
3,985,985	+		GFF3946	0.87	-0.1
3,985,985	+		GFF3946	0.87	+1.7
3,986,022	+		GFF3946	0.88	+0.5
3,986,052	+		GFF3946	0.89	-0.4
3,986,104	+				+0.4
3,986,111	+				+0.1
3,986,112	-				-0.3
3,986,112	-				-0.2
3,986,116	+				-0.7
3,986,147	-				-2.4
3,986,166	-				+0.5
3,986,173	+				+0.5
3,986,191	+				+0.2
3,986,196	+				-0.1
3,986,206	+				+0.6
3,986,206	+				+0.2
3,986,206	+				+0.4
3,986,206	+				-0.7
3,986,213	+				+1.5
3,986,214	-				-1.3
3,986,214	-				+0.4
3,986,220	+				-0.4
3,986,220	+				+0.5
3,986,222	-				-1.2
3,986,232	+				+0.5
3,986,235	+				+0.5
3,986,240	-				+0.1
3,986,245	-				+1.2
3,986,254	-				+0.2
3,986,261	-				+0.8
3,986,264	+				-0.5
3,986,267	-				+0.9
3,986,269	+				+0.6
3,986,269	+				+0.5
3,986,269	+				-1.7
3,986,269	+				+0.4
3,986,274	+				+0.2
3,986,274	+				+0.1
3,986,274	+				-1.2
3,986,274	+				+0.2
3,986,282	-				-0.1
3,986,323	+				+2.0
3,986,326	-				-2.3
3,986,334	+				-1.0
3,986,334	+				-2.0
3,986,334	+				+0.9
3,986,350	+				-0.4
3,986,352	-				+1.1
3,986,356	+				+0.6
3,986,356	+				+0.7
3,986,356	+				+1.1
3,986,356	+				+1.4
3,986,357	+				-0.3
3,986,358	-				-1.3
3,986,358	-				-1.1
3,986,364	-				-1.4
3,986,387	+				-0.5
3,986,419	+		GFF3947	0.20	-0.5
3,986,427	-		GFF3947	0.25	-2.1
3,986,434	+		GFF3947	0.29	-0.5
3,986,435	-		GFF3947	0.30	+0.9
3,986,452	-		GFF3947	0.40	-0.4
3,986,454	+		GFF3947	0.41	+0.7
3,986,454	+		GFF3947	0.41	+1.4
3,986,462	-		GFF3947	0.46	+0.0
3,986,472	-		GFF3947	0.51	-1.0
3,986,472	-		GFF3947	0.51	-0.7
3,986,515	+		GFF3947	0.77	-1.5
3,986,520	+		GFF3947	0.80	+0.3
3,986,520	+		GFF3947	0.80	+0.5
3,986,523	-		GFF3947	0.81	-3.1
3,986,568	+				+0.1
3,986,576	-				-0.1
3,986,601	+				+0.5
3,986,609	-				+0.2
3,986,611	+				+0.6
3,986,611	+				-0.8
3,986,611	+				-2.1
3,986,611	+				+0.2
3,986,611	+				-1.1
3,986,611	+				-0.0
3,986,611	+				+0.3
3,986,611	+				-1.8
3,986,611	+				-0.6
3,986,611	+				-0.4
3,986,611	+				+0.4
3,986,611	+				+0.5
3,986,611	+				-0.6
3,986,611	+				-1.6
3,986,611	+				-1.1
3,986,611	+				-0.1
3,986,611	+				+0.3
3,986,611	+				-1.4
3,986,611	+				-1.0
3,986,611	+				+1.3
3,986,611	+				-2.0
3,986,611	+				-0.9
3,986,611	+				+0.8
3,986,611	+				-0.1
3,986,611	+				-0.9
3,986,611	+				-0.8
3,986,611	+				+0.5
3,986,611	+				-2.4
3,986,611	+				-0.3
3,986,611	+				-0.4
3,986,611	+				-2.0
3,986,611	+				-1.1
3,986,611	+				+0.4
3,986,611	+				-0.4
3,986,611	+				+0.4
3,986,611	+				+0.7
3,986,611	+				-0.6
3,986,611	+				+0.1
3,986,611	+				-1.3
3,986,611	+				+0.7
3,986,611	+				-0.8
3,986,611	+				-1.1
3,986,611	+				-1.2
3,986,611	+				-1.1
3,986,611	+				+0.6
3,986,611	+				+0.6
3,986,611	+				+0.3
3,986,618	+				-0.6
3,986,619	-				+0.7
3,986,619	-				-0.9
3,986,619	-				-0.0
3,986,619	-				-2.1
3,986,619	-				+1.9
3,986,619	-				+0.9
3,986,619	-				+0.0
3,986,619	-				+0.0
3,986,619	-				+0.5
3,986,619	-				-0.6
3,986,619	-				+0.3
3,986,619	-				+1.5
3,986,619	-				-0.3
3,986,619	-				-0.5
3,986,619	-				-0.9
3,986,619	-				+0.4
3,986,619	-				-0.6
3,986,619	-				+2.2
3,986,619	-				+0.9
3,986,619	-				-0.7
3,986,619	-				+0.6
3,986,619	-				+0.1
3,986,619	-				+0.2
3,986,619	-				-1.2
3,986,619	-				+1.0
3,986,619	-				+0.0
3,986,619	-				-1.0
3,986,619	-				+1.0
3,986,619	-				+0.7
3,986,619	-				+0.1
3,986,619	-				+0.7
3,986,619	-				-0.4
3,986,619	-				-0.0
3,986,619	-				-1.3
3,986,619	-				-1.3
3,986,619	-				+0.7
3,986,619	-				-0.5
3,986,619	-				+0.3
3,986,620	-				-0.7
3,986,626	-				-0.8
3,986,626	-				-0.3
3,986,634	+				-0.3
3,986,636	-				-0.4
3,986,639	+				-1.1
3,986,639	+				-0.3
3,986,642	-				+0.1
3,986,652	-				+0.8
3,986,652	-				+0.0
3,986,661	+				+1.1
3,986,661	+				-0.4
3,986,669	-				-0.1
3,986,672	+				+0.3
3,986,689	+				-1.1
3,986,701	-				+0.2
3,986,701	-				-0.4
3,986,701	-				-0.8
3,986,707	+				+1.7
3,986,708	+				-3.1
3,986,708	+				-2.6
3,986,708	+				-1.2
3,986,716	-				+0.9
3,986,716	-				+0.2
3,986,718	-				-2.3
3,986,723	-				-0.1
3,986,736	+				-1.3
3,986,744	-				-0.7
3,986,770	+				-0.4
3,986,784	+				+0.0
3,986,792	+				-0.7
3,986,792	-				-0.7
3,986,792	-				-1.1
3,986,798	+				+0.4
3,986,800	-				+0.6
3,986,801	-				-0.9
3,986,816	+				-0.7
3,986,834	-				-2.3
3,986,873	+				-0.1
3,986,873	+				+0.5
3,986,880	+				-1.0
3,986,880	+				+0.5
3,986,880	+				-0.7
3,986,888	-				-0.4
3,986,888	-				+0.6
3,986,888	-				-0.3
3,986,926	+				-0.7
3,986,926	+				-0.2
3,986,928	+				-0.4
3,986,934	-				+0.5
3,986,934	-				-1.0
3,986,936	+		GFF3948	0.10	-0.9
3,986,936	+		GFF3948	0.10	-0.1
3,986,954	+		GFF3948	0.12	+0.3
3,986,965	-		GFF3948	0.12	-0.9
3,986,999	+		GFF3948	0.15	-0.8
3,987,017	+		GFF3948	0.17	-0.4
3,987,021	-		GFF3948	0.17	-1.0
3,987,025	-		GFF3948	0.17	-0.8
3,987,025	-		GFF3948	0.17	-1.0
3,987,028	-		GFF3948	0.17	-1.5
3,987,041	+		GFF3948	0.19	-0.6
3,987,052	+		GFF3948	0.19	+0.5
3,987,052	+		GFF3948	0.19	-1.0
3,987,057	-		GFF3948	0.20	-0.3
3,987,060	-		GFF3948	0.20	+1.2
3,987,060	-		GFF3948	0.20	-1.9
3,987,066	+		GFF3948	0.20	+0.2
3,987,080	+		GFF3948	0.22	+0.1
3,987,083	+		GFF3948	0.22	+0.7
3,987,088	-		GFF3948	0.22	-0.3
3,987,091	-		GFF3948	0.22	-0.1
3,987,091	-		GFF3948	0.22	-1.1
3,987,093	+		GFF3948	0.23	-1.0
3,987,093	+		GFF3948	0.23	-0.1
3,987,093	+		GFF3948	0.23	+0.5
3,987,093	+		GFF3948	0.23	+0.2
3,987,093	+		GFF3948	0.23	-0.8
3,987,093	+		GFF3948	0.23	-0.4
3,987,093	+		GFF3948	0.23	-0.6
3,987,101	-		GFF3948	0.23	+0.1
3,987,101	-		GFF3948	0.23	-0.5
3,987,101	-		GFF3948	0.23	-0.9
3,987,101	-		GFF3948	0.23	-0.2
3,987,101	-		GFF3948	0.23	-0.3
3,987,101	-		GFF3948	0.23	-1.3
3,987,136	+		GFF3948	0.26	+0.7
3,987,136	+		GFF3948	0.26	+0.6
3,987,169	+		GFF3948	0.29	+1.1
3,987,171	+		GFF3948	0.29	-1.6
3,987,171	+		GFF3948	0.29	-0.7
3,987,176	+		GFF3948	0.29	+0.4
3,987,176	+		GFF3948	0.29	+1.2
3,987,184	-		GFF3948	0.30	-0.5
3,987,199	+		GFF3948	0.31	-0.6
3,987,206	+		GFF3948	0.32	-1.4
3,987,242	-		GFF3948	0.35	-2.1
3,987,278	+		GFF3948	0.37	+0.5
3,987,331	-		GFF3948	0.42	+0.4
3,987,333	+		GFF3948	0.42	+0.4
3,987,348	-		GFF3948	0.43	-0.5
3,987,350	-		GFF3948	0.43	-0.3
3,987,373	-		GFF3948	0.45	-1.3
3,987,406	+		GFF3948	0.48	-0.3
3,987,414	-		GFF3948	0.48	+1.6
3,987,414	-		GFF3948	0.48	+0.1
3,987,470	+		GFF3948	0.53	+0.3
3,987,471	-		GFF3948	0.53	-0.6
3,987,478	-		GFF3948	0.53	+0.1
3,987,478	-		GFF3948	0.53	-1.6
3,987,488	-		GFF3948	0.54	-0.7
3,987,494	-		GFF3948	0.55	-2.1
3,987,516	+		GFF3948	0.56	-0.2
3,987,523	-		GFF3948	0.57	-0.9
3,987,529	+		GFF3948	0.57	+0.2
3,987,537	-		GFF3948	0.58	-0.9
3,987,537	-		GFF3948	0.58	+0.6
3,987,593	+		GFF3948	0.63	-2.3
3,987,594	-		GFF3948	0.63	+2.2
3,987,600	-		GFF3948	0.63	-0.6
3,987,602	-		GFF3948	0.63	-0.0
3,987,625	-		GFF3948	0.65	-1.0
3,987,672	+		GFF3948	0.69	-2.2
3,987,674	+		GFF3948	0.69	-0.6
3,987,682	-		GFF3948	0.70	+0.8
3,987,698	-		GFF3948	0.71	-0.3
3,987,699	+		GFF3948	0.71	-0.2
3,987,703	-		GFF3948	0.71	-0.4
3,987,703	-		GFF3948	0.71	+0.3
3,987,709	+		GFF3948	0.72	-1.1
3,987,712	-		GFF3948	0.72	-0.3
3,987,717	-		GFF3948	0.72	+1.2
3,987,719	+		GFF3948	0.73	-0.6
3,987,726	-		GFF3948	0.73	+0.1
3,987,727	-		GFF3948	0.73	-1.5
3,987,727	-		GFF3948	0.73	+0.9
3,987,729	+		GFF3948	0.73	-0.7
3,987,754	+		GFF3948	0.75	-0.3
3,987,760	+		GFF3948	0.76	-0.2
3,987,761	-		GFF3948	0.76	-0.1
3,987,780	+		GFF3948	0.77	+0.4
3,987,788	+		GFF3948	0.78	-0.3
3,987,796	-		GFF3948	0.79	+0.6
3,987,798	+		GFF3948	0.79	-0.7
3,987,798	+		GFF3948	0.79	-0.9
3,987,806	-		GFF3948	0.80	-0.8
3,987,806	-		GFF3948	0.80	+0.5
3,987,806	-		GFF3948	0.80	+1.3
3,987,806	-		GFF3948	0.80	+0.9
3,987,806	-		GFF3948	0.80	-3.1
3,987,806	-		GFF3948	0.80	-2.8
3,987,806	-		GFF3948	0.80	+1.3
3,987,867	+		GFF3948	0.84	-0.7
3,987,875	-		GFF3948	0.85	-0.2
3,987,919	+		GFF3948	0.89	-0.7
3,987,919	+		GFF3948	0.89	-2.1
3,987,924	+		GFF3948	0.89	+0.0
3,987,927	-		GFF3948	0.89	-2.3
3,987,929	+		GFF3948	0.89	-0.1
3,987,932	-		GFF3948	0.90	+0.2
3,987,932	-		GFF3948	0.90	+0.8
3,987,932	-		GFF3948	0.90	+0.6
3,987,932	-		GFF3948	0.90	+0.3
3,987,937	-				+0.1
3,987,970	-				+0.9
3,987,982	+				-0.2
3,987,982	+				-0.3
3,987,982	+				-0.3
3,987,982	+				-0.6
3,987,982	+				+0.4
3,987,982	+				+0.1
3,987,990	-				-0.3
3,987,990	-				-1.6
3,987,990	-				+0.9
3,987,990	-				-1.1
3,987,990	-				-2.7
3,987,990	-				-1.5
3,987,990	-				+0.4
3,987,990	-				-0.1
3,987,996	+				-1.3
3,988,002	+				+0.0
3,988,010	-				+0.3
3,988,016	+				+1.4
3,988,033	+				-0.6
3,988,035	+				-1.7
3,988,035	+				-1.0
3,988,039	-				-1.5
3,988,043	-				+0.6
3,988,051	+				-0.6
3,988,051	+				-0.7
3,988,059	-				-0.0
3,988,061	-				+0.6
3,988,061	-				-0.7
3,988,069	-				+0.3
3,988,104	-				-0.1
3,988,116	-				-0.5
3,988,120	+				+0.0
3,988,120	+				-0.7
3,988,120	+				-0.1
3,988,122	+				-1.3
3,988,122	+				-1.5
3,988,122	+				+2.1
3,988,122	+				-1.3
3,988,128	-				+1.8
3,988,128	-				+1.0
3,988,128	-				+0.7
3,988,128	-				-0.5
3,988,128	-				+1.3
3,988,128	-				-0.3
3,988,128	-				+0.2
3,988,128	-				-0.1
3,988,140	+				+0.6
3,988,140	+				-1.4
3,988,202	+		GFF3949	0.16	-0.0
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3,988,485	-		GFF3949	0.64	-0.4
3,988,570	+		GFF3949	0.78	-1.7
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3,988,578	-		GFF3949	0.80	-2.0
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3,988,578	-		GFF3949	0.80	-1.7
3,988,601	-		GFF3949	0.84	+1.1
3,988,627	+		GFF3949	0.88	+0.1
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3,988,645	-				+0.8
3,988,703	-				+0.0
3,988,723	+				-1.6
3,988,775	+				+0.9
3,988,846	-				+0.2
3,988,851	-				+0.5
3,988,853	-				+0.2
3,988,858	-				+0.3
3,988,858	-				+0.5
3,988,858	-				-0.3
3,988,927	+				-0.9
3,988,927	+				+0.1
3,988,927	+				+0.5
3,988,935	-		GFF3950	0.10	-0.3
3,988,938	+		GFF3950	0.10	-0.0
3,988,938	+		GFF3950	0.10	+0.4
3,988,963	+		GFF3950	0.13	+0.6
3,988,991	+		GFF3950	0.15	-2.2
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3,989,039	+		GFF3950	0.19	+1.1
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3,989,049	+		GFF3950	0.20	-1.0
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3,989,053	+		GFF3950	0.20	-0.2
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3,989,057	-		GFF3950	0.20	-0.2
3,989,057	-		GFF3950	0.20	-1.3
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3,989,062	-		GFF3950	0.21	-0.2
3,989,062	-		GFF3950	0.21	-0.3
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