Strain Fitness in Sphingobium sp. HT1-2 around GFF3848

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,886,741	-		GFF3847	0.25	-0.2
3,886,775	+		GFF3847	0.29	-1.6
3,886,780	+		GFF3847	0.29	-1.3
3,886,788	-		GFF3847	0.30	-0.1
3,886,828	+		GFF3847	0.34	-0.6
3,886,828	+		GFF3847	0.34	+1.4
3,886,828	+		GFF3847	0.34	-1.6
3,886,844	-		GFF3847	0.35	-1.9
3,886,846	+		GFF3847	0.35	-2.3
3,886,852	+		GFF3847	0.36	-1.4
3,886,854	-		GFF3847	0.36	-0.9
3,886,854	-		GFF3847	0.36	-0.2
3,886,854	-		GFF3847	0.36	+0.3
3,886,878	+		GFF3847	0.38	+0.1
3,886,888	+		GFF3847	0.39	+1.3
3,886,888	+		GFF3847	0.39	-0.1
3,886,888	+		GFF3847	0.39	+0.1
3,886,888	+		GFF3847	0.39	+0.1
3,886,888	+		GFF3847	0.39	-0.1
3,886,896	-		GFF3847	0.40	+1.1
3,886,896	-		GFF3847	0.40	-0.3
3,886,896	-		GFF3847	0.40	+1.0
3,886,896	-		GFF3847	0.40	+0.4
3,886,896	-		GFF3847	0.40	+0.6
3,886,896	-		GFF3847	0.40	-1.5
3,886,896	-		GFF3847	0.40	+0.0
3,886,896	-		GFF3847	0.40	-0.8
3,886,896	-		GFF3847	0.40	-1.7
3,886,896	-		GFF3847	0.40	-0.1
3,886,914	+		GFF3847	0.42	-2.3
3,886,919	+		GFF3847	0.42	-0.8
3,886,924	+		GFF3847	0.43	-0.4
3,886,924	+		GFF3847	0.43	+0.3
3,886,926	+		GFF3847	0.43	-1.9
3,886,927	-		GFF3847	0.43	+0.7
3,886,927	-		GFF3847	0.43	-1.3
3,886,930	+		GFF3847	0.43	-0.0
3,886,934	-		GFF3847	0.44	-0.2
3,886,934	-		GFF3847	0.44	+0.6
3,886,956	-		GFF3847	0.46	+0.8
3,886,970	-		GFF3847	0.47	-2.6
3,886,970	-		GFF3847	0.47	-0.2
3,886,990	-		GFF3847	0.49	-1.6
3,887,015	-		GFF3847	0.52	-1.5
3,887,027	+		GFF3847	0.53	+0.0
3,887,055	+		GFF3847	0.55	-1.6
3,887,055	+		GFF3847	0.55	-0.9
3,887,055	+		GFF3847	0.55	-0.6
3,887,055	+		GFF3847	0.55	+0.9
3,887,055	+		GFF3847	0.55	+0.3
3,887,055	+		GFF3847	0.55	+1.3
3,887,055	+		GFF3847	0.55	-2.2
3,887,055	+		GFF3847	0.55	-1.2
3,887,055	+		GFF3847	0.55	-0.6
3,887,055	+		GFF3847	0.55	-0.4
3,887,055	+		GFF3847	0.55	-0.6
3,887,063	-		GFF3847	0.56	+0.4
3,887,063	-		GFF3847	0.56	-0.7
3,887,063	-		GFF3847	0.56	-0.1
3,887,063	-		GFF3847	0.56	+0.7
3,887,063	-		GFF3847	0.56	-0.2
3,887,063	-		GFF3847	0.56	+0.4
3,887,063	-		GFF3847	0.56	-0.9
3,887,063	-		GFF3847	0.56	+0.8
3,887,063	-		GFF3847	0.56	-0.3
3,887,063	-		GFF3847	0.56	-1.5
3,887,092	+		GFF3847	0.59	+1.1
3,887,092	+		GFF3847	0.59	+1.0
3,887,100	-		GFF3847	0.60	+0.3
3,887,100	-		GFF3847	0.60	+0.5
3,887,100	-		GFF3847	0.60	-1.7
3,887,100	-		GFF3847	0.60	-0.5
3,887,100	-		GFF3847	0.60	+0.4
3,887,104	+		GFF3847	0.60	+0.5
3,887,107	-		GFF3847	0.60	-1.5
3,887,112	-		GFF3847	0.61	-0.4
3,887,113	+		GFF3847	0.61	-0.5
3,887,118	+		GFF3847	0.61	+1.3
3,887,118	+		GFF3847	0.61	-1.5
3,887,121	-		GFF3847	0.62	-1.5
3,887,121	-		GFF3847	0.62	-0.7
3,887,126	-		GFF3847	0.62	-0.9
3,887,126	-		GFF3847	0.62	+0.2
3,887,139	-		GFF3847	0.63	+0.2
3,887,145	-		GFF3847	0.64	+0.4
3,887,150	-		GFF3847	0.64	-0.3
3,887,151	+		GFF3847	0.65	+0.5
3,887,170	-		GFF3847	0.66	-1.5
3,887,171	+		GFF3847	0.66	-0.4
3,887,171	+		GFF3847	0.66	+1.1
3,887,175	-		GFF3847	0.67	+0.1
3,887,217	+		GFF3847	0.71	-0.5
3,887,228	+		GFF3847	0.72	+0.9
3,887,269	+		GFF3847	0.76	+0.4
3,887,269	+		GFF3847	0.76	-0.8
3,887,295	-		GFF3847	0.78	-0.3
3,887,298	+		GFF3847	0.79	-0.6
3,887,318	+		GFF3847	0.81	-0.9
3,887,325	+		GFF3847	0.81	-1.4
3,887,329	+		GFF3847	0.82	+0.3
3,887,329	+		GFF3847	0.82	-0.2
3,887,329	+		GFF3847	0.82	+0.2
3,887,329	+		GFF3847	0.82	+0.6
3,887,337	-		GFF3847	0.82	+0.4
3,887,337	-		GFF3847	0.82	+1.2
3,887,337	-		GFF3847	0.82	-0.0
3,887,337	-		GFF3847	0.82	-2.8
3,887,338	-		GFF3847	0.82	+0.7
3,887,343	-		GFF3847	0.83	+1.4
3,887,393	+		GFF3847	0.88	+0.1
3,887,400	-		GFF3847	0.88	+0.4
3,887,409	+		GFF3847	0.89	+0.4
3,887,411	+		GFF3847	0.89	-0.1
3,887,449	+				+1.0
3,887,449	-				+0.2
3,887,451	+				+0.5
3,887,457	-				+1.7
3,887,459	-				+0.2
3,887,463	+				+0.2
3,887,474	+				-0.2
3,887,477	-				+0.8
3,887,484	+				+0.6
3,887,484	+				+1.2
3,887,492	-				-1.4
3,887,492	-				+0.4
3,887,492	-				-1.4
3,887,496	+				-0.1
3,887,502	-				-1.8
3,887,524	+				+0.0
3,887,524	+				-0.8
3,887,574	+				-2.3
3,887,582	-				-0.4
3,887,589	-				+0.4
3,887,589	-				-0.1
3,887,589	-				-1.6
3,887,615	-				-0.4
3,887,649	+				-1.7
3,887,657	-				+1.2
3,887,661	+				-1.3
3,887,661	+				-0.2
3,887,662	+				-1.1
3,887,669	-				+0.2
3,887,669	-				+0.2
3,887,669	-				-1.0
3,887,671	+				-0.7
3,887,679	-				-0.1
3,887,679	-				-0.2
3,887,680	+				+0.5
3,887,702	-				-0.7
3,887,719	-				+0.4
3,887,724	+				-0.2
3,887,724	+				-0.1
3,887,724	+				+1.5
3,887,724	+				-2.3
3,887,724	+				+0.0
3,887,724	+				-0.9
3,887,724	+				-0.5
3,887,724	+				-0.4
3,887,724	+				-2.2
3,887,724	+				-0.8
3,887,724	+				+0.8
3,887,724	+				-1.7
3,887,724	+				-0.6
3,887,724	+				-1.2
3,887,724	+				-0.4
3,887,724	+				+0.6
3,887,724	+				+0.5
3,887,724	+				+0.0
3,887,724	+				+1.1
3,887,724	+				+0.2
3,887,724	+				+0.6
3,887,724	+				-0.8
3,887,724	+				-1.8
3,887,732	-				+1.5
3,887,732	-				-0.6
3,887,732	-				+1.1
3,887,732	-				-0.8
3,887,732	-				-0.1
3,887,732	-				-1.5
3,887,732	-				+1.8
3,887,732	-				+0.2
3,887,732	-				-0.6
3,887,732	-				-2.5
3,887,732	-				+0.4
3,887,732	-				-0.9
3,887,732	-				+1.6
3,887,732	-				-1.7
3,887,734	+				-0.4
3,887,734	+				-0.2
3,887,747	-				-1.9
3,887,749	+				-1.2
3,887,754	+				+0.1
3,887,768	+				+0.0
3,887,776	-				+0.8
3,887,776	-				-2.1
3,887,776	-				+0.2
3,887,776	-				-1.0
3,887,795	+		GFF3848	0.11	-2.5
3,887,880	+		GFF3848	0.24	-1.0
3,887,880	+		GFF3848	0.24	+0.8
3,887,880	+		GFF3848	0.24	-0.8
3,887,883	-		GFF3848	0.25	-1.7
3,887,883	-		GFF3848	0.25	+0.9
3,887,883	-		GFF3848	0.25	-0.9
3,887,885	+		GFF3848	0.25	-1.5
3,887,885	+		GFF3848	0.25	+0.2
3,887,888	-		GFF3848	0.25	-0.8
3,887,888	-		GFF3848	0.25	-0.4
3,887,888	-		GFF3848	0.25	-0.1
3,887,888	-		GFF3848	0.25	+0.5
3,887,888	-		GFF3848	0.25	-0.6
3,887,893	-		GFF3848	0.26	-1.3
3,887,893	-		GFF3848	0.26	+1.1
3,887,906	+		GFF3848	0.28	-0.2
3,887,926	-		GFF3848	0.31	-1.4
3,887,941	-		GFF3848	0.33	-1.2
3,887,946	+		GFF3848	0.34	+1.3
3,887,946	+		GFF3848	0.34	+0.2
3,887,952	+		GFF3848	0.35	-1.0
3,887,960	-		GFF3848	0.36	-0.4
3,887,960	-		GFF3848	0.36	-0.4
3,887,962	+		GFF3848	0.37	-0.5
3,887,976	+		GFF3848	0.39	-1.4
3,888,017	-		GFF3848	0.45	-0.0
3,888,022	-		GFF3848	0.46	-0.3
3,888,022	-		GFF3848	0.46	-0.4
3,888,050	-		GFF3848	0.50	+0.7
3,888,056	+		GFF3848	0.51	+0.2
3,888,063	+		GFF3848	0.52	-1.9
3,888,076	-		GFF3848	0.54	-1.5
3,888,079	-		GFF3848	0.55	+1.3
3,888,092	-		GFF3848	0.57	-0.2
3,888,102	-		GFF3848	0.58	-1.4
3,888,105	-		GFF3848	0.59	-0.3
3,888,107	+		GFF3848	0.59	-1.1
3,888,115	+		GFF3848	0.60	-0.7
3,888,135	-		GFF3848	0.63	-1.7
3,888,146	+		GFF3848	0.65	+1.0
3,888,167	-		GFF3848	0.68	+0.0
3,888,167	-		GFF3848	0.68	-2.6
3,888,167	-		GFF3848	0.68	+0.7
3,888,173	+		GFF3848	0.69	+0.1
3,888,178	+		GFF3848	0.70	+1.5
3,888,178	+		GFF3848	0.70	+0.2
3,888,178	+		GFF3848	0.70	+1.2
3,888,178	+		GFF3848	0.70	-0.5
3,888,181	-		GFF3848	0.70	+0.5
3,888,181	-		GFF3848	0.70	+0.6
3,888,181	-		GFF3848	0.70	+0.0
3,888,225	+		GFF3848	0.77	-0.9
3,888,225	+		GFF3848	0.77	-0.8
3,888,227	-		GFF3848	0.77	-1.1
3,888,233	-		GFF3848	0.78	-1.9
3,888,248	+		GFF3848	0.81	+0.6
3,888,278	-		GFF3848	0.85	-1.4
3,888,280	+		GFF3848	0.86	+0.6
3,888,351	-				-0.5
3,888,354	+				-1.9
3,888,354	+				-0.3
3,888,354	+				+1.3
3,888,362	-				-1.4
3,888,362	-				-0.4
3,888,362	-				-1.8
3,888,362	-				+0.5
3,888,362	-				-2.6
3,888,362	-				+0.1
3,888,377	+				-0.1
3,888,377	-				-1.9
3,888,385	-				-1.2
3,888,418	-				-0.8
3,888,418	-				-0.9
3,888,431	-				-2.2
3,888,485	+				-1.0
3,888,499	+				-2.2
3,888,507	-				+0.0
3,888,558	+		GFF3849	0.10	-0.1
3,888,558	+		GFF3849	0.10	-0.4
3,888,558	+		GFF3849	0.10	-1.0
3,888,558	+		GFF3849	0.10	-0.0
3,888,558	+		GFF3849	0.10	-0.1
3,888,558	+		GFF3849	0.10	-1.4
3,888,566	-		GFF3849	0.11	+0.6
3,888,566	-		GFF3849	0.11	-0.4
3,888,566	-		GFF3849	0.11	-0.1
3,888,571	-		GFF3849	0.12	-0.8
3,888,582	+		GFF3849	0.14	-1.1
3,888,582	+		GFF3849	0.14	-0.8
3,888,590	-		GFF3849	0.15	-0.4
3,888,660	-		GFF3849	0.26	+0.8
3,888,660	-		GFF3849	0.26	+0.0
3,888,667	-		GFF3849	0.27	+0.6
3,888,679	-		GFF3849	0.29	+0.9
3,888,692	-		GFF3849	0.31	+0.2
3,888,697	-		GFF3849	0.31	-2.7
3,888,697	-		GFF3849	0.31	+1.6
3,888,702	+		GFF3849	0.32	-1.3
3,888,702	+		GFF3849	0.32	-0.0
3,888,709	-		GFF3849	0.33	-2.1
3,888,710	-		GFF3849	0.33	-0.4
3,888,710	-		GFF3849	0.33	-1.2
3,888,710	-		GFF3849	0.33	-0.1
3,888,712	+		GFF3849	0.34	-0.5
3,888,741	+		GFF3849	0.38	-0.3
3,888,748	-		GFF3849	0.39	-2.3
3,888,769	+		GFF3849	0.43	-1.2
3,888,769	+		GFF3849	0.43	+0.0
3,888,769	+		GFF3849	0.43	+0.6
3,888,769	+		GFF3849	0.43	-0.2
3,888,769	+		GFF3849	0.43	-0.4
3,888,777	-		GFF3849	0.44	-1.9
3,888,777	-		GFF3849	0.44	+0.4
3,888,777	-		GFF3849	0.44	+0.2
3,888,777	-		GFF3849	0.44	-1.2
3,888,788	+		GFF3849	0.45	+0.2
3,888,792	+		GFF3849	0.46	-0.0
3,888,800	-		GFF3849	0.47	-0.3
3,888,800	-		GFF3849	0.47	-0.5
3,888,826	-		GFF3849	0.51	+0.8
3,888,841	+		GFF3849	0.54	-0.3
3,888,847	+		GFF3849	0.54	-0.2
3,888,851	+		GFF3849	0.55	-2.4
3,888,854	+		GFF3849	0.56	-1.7
3,888,861	+		GFF3849	0.57	+0.5
3,888,862	-		GFF3849	0.57	-0.3
3,888,869	-		GFF3849	0.58	-0.5
3,888,869	-		GFF3849	0.58	-0.9
3,888,869	-		GFF3849	0.58	-2.8
3,888,875	+		GFF3849	0.59	+0.6
3,888,879	+		GFF3849	0.59	-0.5
3,888,907	-		GFF3849	0.64	+0.7
3,888,908	+		GFF3849	0.64	-0.1
3,888,908	+		GFF3849	0.64	-0.2
3,888,908	+		GFF3849	0.64	-0.5
3,888,908	+		GFF3849	0.64	+0.6
3,888,908	+		GFF3849	0.64	+0.6
3,888,916	-		GFF3849	0.65	+0.1
3,888,916	-		GFF3849	0.65	-1.0
3,888,916	-		GFF3849	0.65	+0.3
3,888,917	-		GFF3849	0.65	-2.5
3,888,921	-		GFF3849	0.66	+1.5
3,888,931	+		GFF3849	0.67	-1.2
3,888,941	+		GFF3849	0.69	+0.1
3,888,949	-		GFF3849	0.70	+0.5
3,888,958	-		GFF3849	0.71	-2.4
3,888,972	+		GFF3849	0.74	-0.0
3,888,972	+		GFF3849	0.74	+1.0
3,888,972	+		GFF3849	0.74	+0.4
3,888,972	+		GFF3849	0.74	-1.4
3,888,972	+		GFF3849	0.74	+1.6
3,888,972	+		GFF3849	0.74	-0.1
3,888,972	+		GFF3849	0.74	-0.9
3,888,975	-		GFF3849	0.74	-1.2
3,888,980	-		GFF3849	0.75	-0.4
3,888,980	-		GFF3849	0.75	+0.2
3,888,980	-		GFF3849	0.75	-0.1
3,888,980	-		GFF3849	0.75	+0.6
3,888,980	-		GFF3849	0.75	+0.0
3,888,980	-		GFF3849	0.75	+0.8
3,888,980	-		GFF3849	0.75	-2.2
3,888,980	-		GFF3849	0.75	-1.5
3,888,980	-		GFF3849	0.75	+1.6
3,888,980	-		GFF3849	0.75	-0.4
3,888,985	-		GFF3849	0.76	-0.3
3,888,997	-		GFF3849	0.77	+1.4
3,889,002	-		GFF3849	0.78	+0.1
3,889,013	+		GFF3849	0.80	-2.6
3,889,013	+		GFF3849	0.80	-0.1
3,889,013	+		GFF3849	0.80	+0.6
3,889,013	+		GFF3849	0.80	-0.9
3,889,013	+		GFF3849	0.80	+1.5
3,889,021	-		GFF3849	0.81	+1.3
3,889,021	-		GFF3849	0.81	+0.2
3,889,071	-		GFF3849	0.89	-0.5
3,889,072	+		GFF3849	0.89	-0.8
3,889,111	-				-0.1
3,889,111	-				+0.4
3,889,112	+				+0.2
3,889,128	+				-0.5
3,889,128	+				+0.2
3,889,132	-				-1.9
3,889,132	-				+0.2
3,889,133	+				-2.0
3,889,133	+				+1.0
3,889,136	-				-1.2
3,889,141	-				-1.2
3,889,146	-				+0.6
3,889,157	-				-1.9
3,889,173	+				+1.1
3,889,177	+				-1.4
3,889,202	+				-1.4
3,889,202	+				-0.6
3,889,208	-				-0.4
3,889,230	-				+0.2
3,889,230	-				-0.9
3,889,236	-				-0.1
3,889,236	-				-1.6
3,889,238	+				-0.2
3,889,243	+				-1.1
3,889,246	-				+1.1
3,889,246	-				-0.7
3,889,255	-				-0.1
3,889,273	+		GFF3850	0.10	-1.6
3,889,273	+		GFF3850	0.10	-0.9
3,889,273	+		GFF3850	0.10	+0.6
3,889,290	+		GFF3850	0.12	+0.5
3,889,291	-		GFF3850	0.12	-1.4
3,889,328	-		GFF3850	0.16	+0.1
3,889,329	+		GFF3850	0.16	+0.1
3,889,342	-		GFF3850	0.17	-0.1
3,889,358	-		GFF3850	0.18	-0.6
3,889,360	+		GFF3850	0.19	+0.5
3,889,360	+		GFF3850	0.19	+0.8
3,889,372	+		GFF3850	0.20	-0.4