Strain Fitness in Sphingobium sp. HT1-2 around GFF3784

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,825,724	+		GFF3783	0.42	-2.4
3,825,727	-		GFF3783	0.42	-0.5
3,825,728	+		GFF3783	0.42	-1.2
3,825,728	+		GFF3783	0.42	-1.8
3,825,776	-		GFF3783	0.45	-1.6
3,825,778	-		GFF3783	0.45	+0.2
3,825,981	+		GFF3783	0.58	-2.5
3,826,016	+		GFF3783	0.60	-1.9
3,826,016	+		GFF3783	0.60	-1.2
3,826,017	-		GFF3783	0.60	-1.7
3,826,062	-		GFF3783	0.63	+0.4
3,826,074	+		GFF3783	0.63	-0.4
3,826,074	+		GFF3783	0.63	-1.8
3,826,082	-		GFF3783	0.64	+0.1
3,826,082	-		GFF3783	0.64	+1.6
3,826,082	-		GFF3783	0.64	-0.4
3,826,082	-		GFF3783	0.64	+0.4
3,826,107	+		GFF3783	0.65	-1.5
3,826,121	-		GFF3783	0.66	-0.9
3,826,123	+		GFF3783	0.66	+1.4
3,826,131	-		GFF3783	0.67	-2.4
3,826,131	-		GFF3783	0.67	-1.3
3,826,131	-		GFF3783	0.67	+0.6
3,826,147	-		GFF3783	0.68	-2.5
3,826,168	-		GFF3783	0.69	-1.8
3,826,168	-		GFF3783	0.69	+0.4
3,826,186	+		GFF3783	0.70	-1.5
3,826,194	-		GFF3783	0.71	+0.0
3,826,196	+		GFF3783	0.71	-0.1
3,826,196	+		GFF3783	0.71	-0.5
3,826,210	-		GFF3783	0.72	-0.3
3,826,210	-		GFF3783	0.72	-0.6
3,826,228	+		GFF3783	0.73	-1.2
3,826,228	+		GFF3783	0.73	-1.9
3,826,228	+		GFF3783	0.73	-0.3
3,826,228	+		GFF3783	0.73	+0.4
3,826,228	+		GFF3783	0.73	-2.3
3,826,228	+		GFF3783	0.73	-0.4
3,826,228	+		GFF3783	0.73	+0.4
3,826,228	+		GFF3783	0.73	-0.2
3,826,228	+		GFF3783	0.73	-0.5
3,826,228	+		GFF3783	0.73	-1.7
3,826,236	-		GFF3783	0.73	-0.8
3,826,236	-		GFF3783	0.73	-0.4
3,826,236	-		GFF3783	0.73	-0.2
3,826,236	-		GFF3783	0.73	-0.8
3,826,236	-		GFF3783	0.73	-1.2
3,826,236	-		GFF3783	0.73	-2.1
3,826,236	-		GFF3783	0.73	-2.0
3,826,236	-		GFF3783	0.73	+1.0
3,826,236	-		GFF3783	0.73	-1.4
3,826,236	-		GFF3783	0.73	-0.5
3,826,241	-		GFF3783	0.74	-0.5
3,826,242	+		GFF3783	0.74	-1.6
3,826,311	+		GFF3783	0.78	+0.1
3,826,317	+		GFF3783	0.78	-1.1
3,826,325	-		GFF3783	0.79	-1.6
3,826,374	+		GFF3783	0.82	-2.1
3,826,429	+		GFF3783	0.85	-0.2
3,826,429	+		GFF3783	0.85	-0.3
3,826,430	-		GFF3783	0.85	-0.8
3,826,437	-		GFF3783	0.86	-0.4
3,826,442	-		GFF3783	0.86	-1.8
3,826,499	-		GFF3783	0.90	+0.3
3,826,509	-				+0.3
3,826,537	-				-0.5
3,826,554	-				+0.1
3,826,561	+				-1.5
3,826,561	+				+0.8
3,826,561	+				-1.8
3,826,561	+				-1.6
3,826,561	+				-1.8
3,826,561	+				+0.3
3,826,561	+				+0.4
3,826,561	+				-0.9
3,826,569	-				-2.3
3,826,569	-				-2.1
3,826,569	-				+0.3
3,826,569	-				-0.4
3,826,569	-				-0.8
3,826,569	-				-0.2
3,826,569	-				-0.7
3,826,574	+				+0.8
3,826,574	+				-2.4
3,826,574	+				+0.3
3,826,575	-				-0.5
3,826,580	+				-0.2
3,826,580	-				-0.4
3,826,646	+				-1.5
3,826,674	+				-1.2
3,826,702	+				-0.8
3,826,702	+				-1.3
3,826,702	+				-2.2
3,826,702	+				-1.5
3,826,702	+				-0.9
3,826,702	+				-1.3
3,826,708	+		GFF3784	0.12	+1.1
3,826,708	+		GFF3784	0.12	-1.7
3,826,708	+		GFF3784	0.12	-1.5
3,826,709	-		GFF3784	0.13	-1.8
3,826,710	-		GFF3784	0.13	-1.0
3,826,710	-		GFF3784	0.13	-0.3
3,826,710	-		GFF3784	0.13	-0.6
3,826,710	-		GFF3784	0.13	-1.3
3,826,716	-		GFF3784	0.15	+0.3
3,826,716	-		GFF3784	0.15	-1.7
3,826,726	-		GFF3784	0.19	-0.5
3,826,726	-		GFF3784	0.19	-0.6
3,826,729	+		GFF3784	0.20	-0.8
3,826,729	+		GFF3784	0.20	-0.2
3,826,729	+		GFF3784	0.20	-0.7
3,826,729	+		GFF3784	0.20	-0.3
3,826,729	+		GFF3784	0.20	-1.6
3,826,737	-		GFF3784	0.24	-1.1
3,826,737	-		GFF3784	0.24	-1.1
3,826,739	+		GFF3784	0.24	+0.4
3,826,817	+		GFF3784	0.55	-1.1
3,826,818	-		GFF3784	0.55	+0.3
3,826,833	+		GFF3784	0.61	-1.3
3,826,843	-		GFF3784	0.65	-2.7
3,826,857	+		GFF3784	0.71	-1.0
3,826,889	-		GFF3784	0.83	+0.8
3,827,005	+				-1.2
3,827,005	+				+0.4
3,827,005	+				-0.2
3,827,005	+				-2.3
3,827,005	+				+0.1
3,827,007	+				+0.0
3,827,010	+				-0.4
3,827,013	-				-0.4
3,827,013	-				-0.2
3,827,013	-				-1.3
3,827,013	-				+0.4
3,827,013	-				+0.8
3,827,013	-				+0.4
3,827,013	-				-1.3
3,827,013	-				-0.2
3,827,013	-				-2.2
3,827,013	-				-0.0
3,827,015	-				-0.3
3,827,017	+				-1.5
3,827,017	+				-0.5
3,827,017	+				+1.1
3,827,017	+				-2.4
3,827,024	+				-0.5
3,827,025	-				+0.8
3,827,025	-				-2.3
3,827,030	-				+0.3
3,827,032	+				-1.4
3,827,040	-				+0.4
3,827,040	-				-0.8
3,827,040	-				+0.7
3,827,040	-				+0.3
3,827,040	-				-0.2
3,827,050	-				-0.6
3,827,050	-				+0.0
3,827,059	+				+0.8
3,827,059	+				-0.9
3,827,065	+				+0.8
3,827,066	+				-1.3
3,827,067	+				-0.4
3,827,067	-				-0.9
3,827,073	-				-0.1
3,827,075	-				-0.3
3,827,075	-				-0.4
3,827,075	-				-1.1
3,827,076	+				-0.4
3,827,090	-				+0.3
3,827,101	+				-2.6
3,827,101	+				-0.6
3,827,101	+				-0.2
3,827,101	+				+0.3
3,827,104	-				+0.2
3,827,106	+				-0.8
3,827,106	+				-1.7
3,827,106	+				+0.2
3,827,106	+				-1.1
3,827,114	-				+0.6
3,827,114	-				-0.0
3,827,155	+				-0.0
3,827,155	+				-0.7
3,827,163	-				-0.6
3,827,198	+				+0.5
3,827,198	+				-1.7
3,827,198	+				-0.7
3,827,198	+				-0.9
3,827,203	+				+0.9
3,827,206	-				-1.9
3,827,206	-				-0.7
3,827,206	-				-0.4
3,827,206	-				+0.2
3,827,206	-				-0.9
3,827,206	-				-1.4
3,827,206	-				-2.3
3,827,206	-				-0.0
3,827,206	-				+1.0
3,827,213	-		GFF3785	0.10	-0.3
3,827,218	-		GFF3785	0.11	-1.5
3,827,218	-		GFF3785	0.11	-0.3
3,827,221	+		GFF3785	0.11	-1.1
3,827,232	+		GFF3785	0.12	-0.2
3,827,245	-		GFF3785	0.14	+0.2
3,827,254	+		GFF3785	0.15	+0.2
3,827,284	-		GFF3785	0.18	-1.5
3,827,285	-		GFF3785	0.18	-1.7
3,827,286	-		GFF3785	0.18	-0.7
3,827,292	+		GFF3785	0.19	-1.1
3,827,292	+		GFF3785	0.19	-0.3
3,827,295	-		GFF3785	0.19	+0.9
3,827,300	-		GFF3785	0.20	-0.3
3,827,300	-		GFF3785	0.20	-1.1
3,827,321	-		GFF3785	0.22	-0.0
3,827,339	-		GFF3785	0.24	-0.8
3,827,346	+		GFF3785	0.25	+1.1
3,827,347	-		GFF3785	0.25	-0.1
3,827,354	-		GFF3785	0.25	+0.6
3,827,354	-		GFF3785	0.25	-1.1
3,827,354	-		GFF3785	0.25	+1.0
3,827,379	-		GFF3785	0.28	+0.0
3,827,379	-		GFF3785	0.28	-1.2
3,827,379	-		GFF3785	0.28	-1.2
3,827,391	+		GFF3785	0.29	-0.9
3,827,396	+		GFF3785	0.30	-0.5
3,827,404	-		GFF3785	0.31	-1.9
3,827,463	-		GFF3785	0.37	+0.5
3,827,472	+		GFF3785	0.38	-0.7
3,827,480	-		GFF3785	0.39	+0.0
3,827,487	-		GFF3785	0.40	-0.8
3,827,489	+		GFF3785	0.40	-1.3
3,827,498	+		GFF3785	0.41	+0.4
3,827,503	-		GFF3785	0.42	-0.1
3,827,508	+		GFF3785	0.42	+1.2
3,827,508	+		GFF3785	0.42	+0.4
3,827,508	+		GFF3785	0.42	-0.8
3,827,508	+		GFF3785	0.42	+0.8
3,827,508	+		GFF3785	0.42	-1.9
3,827,516	-		GFF3785	0.43	+0.5
3,827,516	-		GFF3785	0.43	-1.3
3,827,516	-		GFF3785	0.43	-0.4
3,827,516	-		GFF3785	0.43	+1.3
3,827,516	-		GFF3785	0.43	+0.9
3,827,516	-		GFF3785	0.43	-0.8
3,827,516	-		GFF3785	0.43	-3.0
3,827,516	-		GFF3785	0.43	+0.3
3,827,516	-		GFF3785	0.43	+0.0
3,827,527	+		GFF3785	0.44	+1.1
3,827,535	-		GFF3785	0.45	+1.4
3,827,557	-		GFF3785	0.47	-1.2
3,827,558	-		GFF3785	0.47	+0.3
3,827,577	+		GFF3785	0.49	+1.1
3,827,577	+		GFF3785	0.49	-1.9
3,827,583	+		GFF3785	0.50	+0.8
3,827,590	-		GFF3785	0.51	-1.5
3,827,627	-		GFF3785	0.55	+0.4
3,827,636	+		GFF3785	0.56	-0.4
3,827,637	-		GFF3785	0.56	+0.6
3,827,649	+		GFF3785	0.57	-0.5
3,827,649	+		GFF3785	0.57	+0.5
3,827,649	+		GFF3785	0.57	-0.2
3,827,649	+		GFF3785	0.57	-0.9
3,827,651	-		GFF3785	0.57	-0.1
3,827,651	-		GFF3785	0.57	-0.1
3,827,651	-		GFF3785	0.57	-2.1
3,827,680	+		GFF3785	0.61	-0.1
3,827,688	-		GFF3785	0.61	-0.5
3,827,699	+		GFF3785	0.63	-0.1
3,827,699	+		GFF3785	0.63	+0.5
3,827,712	+		GFF3785	0.64	+1.7
3,827,714	+		GFF3785	0.64	-1.2
3,827,718	-		GFF3785	0.65	+0.7
3,827,729	+		GFF3785	0.66	-0.2
3,827,739	+		GFF3785	0.67	-0.7
3,827,739	+		GFF3785	0.67	+0.8
3,827,747	-		GFF3785	0.68	+2.0
3,827,749	-		GFF3785	0.68	-0.5
3,827,776	+		GFF3785	0.71	-0.8
3,827,782	+		GFF3785	0.72	-1.1
3,827,798	+		GFF3785	0.73	+0.7
3,827,798	+		GFF3785	0.73	+1.3
3,827,798	+		GFF3785	0.73	+0.8
3,827,798	+		GFF3785	0.73	-0.7
3,827,806	-		GFF3785	0.74	-0.8
3,827,806	-		GFF3785	0.74	-0.8
3,827,815	+		GFF3785	0.75	-0.2
3,827,828	+		GFF3785	0.76	+0.7
3,827,836	+		GFF3785	0.77	-0.2
3,827,840	+		GFF3785	0.78	+0.3
3,827,843	-		GFF3785	0.78	+0.6
3,827,843	-		GFF3785	0.78	-0.1
3,827,844	-		GFF3785	0.78	-1.5
3,827,853	+		GFF3785	0.79	-1.6
3,827,861	-		GFF3785	0.80	-0.5
3,827,873	+		GFF3785	0.81	+0.5
3,827,882	+		GFF3785	0.82	+0.4
3,827,916	+		GFF3785	0.86	+1.8
3,827,916	+		GFF3785	0.86	-1.1
3,827,918	-		GFF3785	0.86	-0.5
3,827,928	+		GFF3785	0.87	-0.8
3,827,928	+		GFF3785	0.87	-1.2
3,827,928	+		GFF3785	0.87	+0.7