Strain Fitness in Sphingobium sp. HT1-2 around GFF3763

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,800,031	+		GFF3762	0.11	-0.2
3,800,034	-		GFF3762	0.11	+0.8
3,800,034	-		GFF3762	0.11	-0.3
3,800,052	+		GFF3762	0.13	-1.4
3,800,060	-		GFF3762	0.14	-0.1
3,800,062	+		GFF3762	0.14	-2.3
3,800,062	+		GFF3762	0.14	-0.5
3,800,062	+		GFF3762	0.14	-1.7
3,800,062	+		GFF3762	0.14	+0.7
3,800,062	+		GFF3762	0.14	+0.3
3,800,065	-		GFF3762	0.14	-1.6
3,800,065	-		GFF3762	0.14	-0.0
3,800,070	-		GFF3762	0.15	+2.2
3,800,079	-		GFF3762	0.16	-2.5
3,800,079	-		GFF3762	0.16	+0.2
3,800,084	-		GFF3762	0.16	-0.4
3,800,084	-		GFF3762	0.16	+0.8
3,800,097	+		GFF3762	0.17	-0.2
3,800,097	+		GFF3762	0.17	-0.6
3,800,097	+		GFF3762	0.17	-0.7
3,800,097	+		GFF3762	0.17	-1.2
3,800,102	+		GFF3762	0.18	-0.4
3,800,102	+		GFF3762	0.18	-1.3
3,800,102	+		GFF3762	0.18	+0.4
3,800,102	+		GFF3762	0.18	-0.4
3,800,105	-		GFF3762	0.18	-2.2
3,800,105	-		GFF3762	0.18	-1.2
3,800,105	-		GFF3762	0.18	-2.2
3,800,105	-		GFF3762	0.18	+0.5
3,800,105	-		GFF3762	0.18	-0.0
3,800,105	-		GFF3762	0.18	-0.6
3,800,122	+		GFF3762	0.20	-0.6
3,800,122	+		GFF3762	0.20	+0.7
3,800,122	+		GFF3762	0.20	-0.7
3,800,122	+		GFF3762	0.20	+0.3
3,800,122	+		GFF3762	0.20	+0.4
3,800,122	+		GFF3762	0.20	-1.1
3,800,130	-		GFF3762	0.20	-0.4
3,800,130	-		GFF3762	0.20	-0.8
3,800,142	-		GFF3762	0.22	+0.8
3,800,142	-		GFF3762	0.22	-1.2
3,800,184	+		GFF3762	0.25	+0.7
3,800,191	+		GFF3762	0.26	+0.2
3,800,196	+		GFF3762	0.27	-1.3
3,800,240	+		GFF3762	0.31	+0.6
3,800,248	-		GFF3762	0.31	-0.6
3,800,255	+		GFF3762	0.32	+0.4
3,800,304	+		GFF3762	0.37	+0.4
3,800,304	+		GFF3762	0.37	-0.3
3,800,308	+		GFF3762	0.37	-0.9
3,800,309	+		GFF3762	0.37	-0.9
3,800,316	-		GFF3762	0.38	-0.2
3,800,381	-		GFF3762	0.44	+0.6
3,800,386	-		GFF3762	0.44	+0.8
3,800,443	-		GFF3762	0.50	+0.6
3,800,445	+		GFF3762	0.50	-0.1
3,800,445	+		GFF3762	0.50	-1.6
3,800,445	+		GFF3762	0.50	-0.5
3,800,445	+		GFF3762	0.50	+0.8
3,800,445	+		GFF3762	0.50	-0.4
3,800,445	+		GFF3762	0.50	-0.8
3,800,453	-		GFF3762	0.50	-1.7
3,800,453	-		GFF3762	0.50	-2.3
3,800,453	-		GFF3762	0.50	-1.4
3,800,453	-		GFF3762	0.50	-0.3
3,800,453	-		GFF3762	0.50	+0.3
3,800,453	-		GFF3762	0.50	-0.6
3,800,453	-		GFF3762	0.50	+0.4
3,800,453	-		GFF3762	0.50	+0.4
3,800,453	-		GFF3762	0.50	+1.4
3,800,457	-		GFF3762	0.51	-0.3
3,800,475	+		GFF3762	0.53	+0.4
3,800,475	+		GFF3762	0.53	+0.3
3,800,479	-		GFF3762	0.53	+0.4
3,800,483	-		GFF3762	0.53	+0.9
3,800,483	-		GFF3762	0.53	+1.3
3,800,483	-		GFF3762	0.53	-1.3
3,800,485	+		GFF3762	0.53	-0.7
3,800,488	-		GFF3762	0.54	+0.4
3,800,490	+		GFF3762	0.54	+0.5
3,800,490	+		GFF3762	0.54	-0.4
3,800,493	-		GFF3762	0.54	+0.2
3,800,498	-		GFF3762	0.55	-1.9
3,800,498	-		GFF3762	0.55	+0.1
3,800,560	+		GFF3762	0.60	-0.5
3,800,560	+		GFF3762	0.60	-1.7
3,800,560	+		GFF3762	0.60	-1.7
3,800,568	-		GFF3762	0.61	-3.2
3,800,570	+		GFF3762	0.61	-0.1
3,800,576	-		GFF3762	0.62	-0.6
3,800,578	-		GFF3762	0.62	+0.1
3,800,599	+		GFF3762	0.64	+1.1
3,800,680	+		GFF3762	0.72	+0.3
3,800,680	+		GFF3762	0.72	-0.6
3,800,680	+		GFF3762	0.72	+0.2
3,800,680	+		GFF3762	0.72	-2.0
3,800,680	+		GFF3762	0.72	-1.2
3,800,688	-		GFF3762	0.72	+0.2
3,800,688	-		GFF3762	0.72	+0.7
3,800,688	-		GFF3762	0.72	-0.5
3,800,688	-		GFF3762	0.72	+0.0
3,800,727	-		GFF3762	0.76	+0.0
3,800,733	-		GFF3762	0.77	-0.1
3,800,737	-		GFF3762	0.77	-1.2
3,800,746	-		GFF3762	0.78	+0.4
3,800,761	+		GFF3762	0.79	-0.3
3,800,767	-		GFF3762	0.80	-0.2
3,800,777	+		GFF3762	0.81	-2.3
3,800,785	-		GFF3762	0.81	-0.2
3,800,785	-		GFF3762	0.81	-2.4
3,800,843	+		GFF3762	0.87	+0.4
3,800,850	-		GFF3762	0.87	+0.4
3,800,886	+				-2.1
3,800,894	-				-0.3
3,800,896	+				-0.6
3,800,896	+				-1.6
3,800,896	+				-2.3
3,800,896	+				+0.5
3,800,896	+				-0.7
3,800,896	+				+1.0
3,800,896	+				-0.1
3,800,896	+				-1.6
3,800,896	+				+0.4
3,800,896	+				-1.2
3,800,896	+				-0.1
3,800,904	-				-1.3
3,800,904	-				-2.3
3,800,904	-				+0.3
3,800,904	-				-2.1
3,800,904	-				+0.3
3,800,904	-				-0.7
3,800,904	-				+1.3
3,800,904	-				-1.2
3,800,904	-				+0.7
3,800,904	-				-1.4
3,800,904	-				-1.4
3,800,904	-				+0.1
3,800,904	-				-1.0
3,800,921	-				-2.5
3,800,932	+				-1.0
3,800,932	+				-1.4
3,800,932	+				-0.6
3,800,932	+				+0.1
3,800,932	+				-0.3
3,800,932	+				-0.2
3,800,932	+				-0.4
3,800,932	+				-3.0
3,800,932	+				-0.1
3,800,932	+				+0.7
3,800,932	+				-1.8
3,800,937	+				+0.4
3,800,940	-				-0.2
3,800,940	-				+0.4
3,800,940	-				+0.7
3,800,940	-				-1.1
3,800,940	-				+0.6
3,800,940	-				-2.0
3,800,940	-				-0.2
3,800,940	-				-0.2
3,800,940	-				+0.6
3,800,940	-				-1.8
3,800,940	-				-0.7
3,800,942	+				-1.3
3,800,945	-				-1.0
3,800,947	+				+1.0
3,800,950	-				-1.3
3,801,038	+				+0.9
3,801,043	+		GFF3763	0.10	-1.2
3,801,046	-		GFF3763	0.11	-0.5
3,801,046	-		GFF3763	0.11	-0.3
3,801,062	+		GFF3763	0.13	-1.0
3,801,070	-		GFF3763	0.14	+1.1
3,801,114	+		GFF3763	0.22	-0.1
3,801,122	+		GFF3763	0.23	-0.3
3,801,197	+		GFF3763	0.35	-0.9
3,801,223	+		GFF3763	0.39	+0.6
3,801,223	+		GFF3763	0.39	+0.4
3,801,256	+		GFF3763	0.45	-0.1
3,801,264	-		GFF3763	0.46	-0.3
3,801,264	-		GFF3763	0.46	+1.3
3,801,264	-		GFF3763	0.46	-0.7
3,801,294	-		GFF3763	0.51	+0.6
3,801,305	+		GFF3763	0.53	-0.9
3,801,356	-		GFF3763	0.61	-0.9
3,801,360	+		GFF3763	0.62	+0.3
3,801,360	+		GFF3763	0.62	-0.1
3,801,369	-		GFF3763	0.63	-0.5
3,801,399	+		GFF3763	0.68	-0.2
3,801,420	+		GFF3763	0.71	-0.0
3,801,420	+		GFF3763	0.71	+0.5
3,801,420	+		GFF3763	0.71	+0.8
3,801,420	+		GFF3763	0.71	+0.3
3,801,420	+		GFF3763	0.71	-1.9
3,801,420	+		GFF3763	0.71	+1.3
3,801,420	+		GFF3763	0.71	-0.0
3,801,420	+		GFF3763	0.71	-1.8
3,801,420	+		GFF3763	0.71	-2.0
3,801,420	+		GFF3763	0.71	+0.2
3,801,420	+		GFF3763	0.71	-0.1
3,801,426	-		GFF3763	0.72	-1.3
3,801,428	-		GFF3763	0.73	-1.6
3,801,428	-		GFF3763	0.73	-2.4
3,801,428	-		GFF3763	0.73	+0.5
3,801,428	-		GFF3763	0.73	-1.0
3,801,428	-		GFF3763	0.73	-0.4
3,801,428	-		GFF3763	0.73	-3.0
3,801,428	-		GFF3763	0.73	+1.4
3,801,428	-		GFF3763	0.73	-1.1
3,801,453	+		GFF3763	0.77	+0.7
3,801,453	+		GFF3763	0.77	-0.3
3,801,453	+		GFF3763	0.77	+1.0
3,801,453	+		GFF3763	0.77	+0.1
3,801,458	+		GFF3763	0.78	+0.2
3,801,461	-		GFF3763	0.78	+0.9
3,801,461	-		GFF3763	0.78	+1.2
3,801,461	-		GFF3763	0.78	-0.7
3,801,461	-		GFF3763	0.78	-0.9
3,801,461	-		GFF3763	0.78	-0.5
3,801,461	-		GFF3763	0.78	-2.4
3,801,461	-		GFF3763	0.78	+0.4
3,801,461	-		GFF3763	0.78	-0.3
3,801,461	-		GFF3763	0.78	-0.4
3,801,463	+		GFF3763	0.78	-0.4
3,801,468	+		GFF3763	0.79	+0.3
3,801,468	+		GFF3763	0.79	+0.1
3,801,476	-		GFF3763	0.80	-1.4
3,801,480	-		GFF3763	0.81	+0.4
3,801,503	+		GFF3763	0.85	-0.1
3,801,511	-		GFF3763	0.86	-0.3
3,801,517	+		GFF3763	0.87	+0.8
3,801,535	-				+1.6
3,801,572	+				-0.3
3,801,577	+				-0.1
3,801,577	+				+0.7
3,801,614	-				+0.5
3,801,684	-				-1.4
3,801,804	+				+0.2
3,801,840	+				+0.1
3,801,840	+				+0.3
3,801,840	+				-0.2
3,801,845	+				-0.1
3,801,848	-				-0.0
3,801,848	-				-0.2
3,801,853	-				+0.6
3,801,853	-				-1.6
3,801,859	-				-0.1
3,801,859	-				-2.6
3,801,870	-				+0.4
3,801,870	-				-0.3
3,801,917	-				+0.3
3,802,005	+				+0.3
3,802,013	-				-2.3
3,802,038	+				-0.1
3,802,058	-		GFF3765	0.11	-0.3
3,802,071	+		GFF3765	0.12	-1.1
3,802,071	+		GFF3765	0.12	-1.2
3,802,077	+		GFF3765	0.13	+0.6
3,802,107	+		GFF3765	0.15	-0.1
3,802,168	+		GFF3765	0.20	-2.0
3,802,170	-		GFF3765	0.20	+1.3
3,802,176	-		GFF3765	0.20	+0.3
3,802,176	-		GFF3765	0.20	+0.3
3,802,180	+		GFF3765	0.20	+1.3
3,802,180	+		GFF3765	0.20	+1.6
3,802,190	+		GFF3765	0.21	+0.7
3,802,190	+		GFF3765	0.21	+0.0
3,802,198	-		GFF3765	0.22	+0.9
3,802,198	-		GFF3765	0.22	+0.7
3,802,198	-		GFF3765	0.22	-0.6
3,802,212	-		GFF3765	0.23	-1.4
3,802,224	+		GFF3765	0.24	+0.4
3,802,231	+		GFF3765	0.24	-0.1
3,802,231	+		GFF3765	0.24	+0.6
3,802,232	-		GFF3765	0.24	-0.2
3,802,234	+		GFF3765	0.24	-0.4
3,802,239	+		GFF3765	0.25	-2.0
3,802,239	+		GFF3765	0.25	-0.8
3,802,244	+		GFF3765	0.25	-2.8
3,802,247	-		GFF3765	0.25	+0.6
3,802,247	-		GFF3765	0.25	-0.3
3,802,249	+		GFF3765	0.26	-0.1
3,802,256	+		GFF3765	0.26	+0.4
3,802,271	+		GFF3765	0.27	-0.2
3,802,271	+		GFF3765	0.27	-1.3
3,802,279	-		GFF3765	0.28	+0.7
3,802,331	+		GFF3765	0.32	+0.0
3,802,344	-		GFF3765	0.33	+0.3
3,802,352	-		GFF3765	0.33	+0.6
3,802,357	+		GFF3765	0.34	-0.4
3,802,365	-		GFF3765	0.34	-1.3
3,802,366	-		GFF3765	0.34	-2.5
3,802,389	-		GFF3765	0.36	-0.5
3,802,392	-		GFF3765	0.36	-1.1
3,802,399	-		GFF3765	0.37	+0.3
3,802,436	+		GFF3765	0.39	-0.1
3,802,442	-		GFF3765	0.40	-2.0
3,802,495	-		GFF3765	0.44	-0.8
3,802,528	+		GFF3765	0.46	+0.4
3,802,532	+		GFF3765	0.47	+0.8
3,802,554	+		GFF3765	0.48	-1.6
3,802,554	+		GFF3765	0.48	-1.7
3,802,554	+		GFF3765	0.48	-0.3
3,802,554	+		GFF3765	0.48	-0.8
3,802,555	+		GFF3765	0.48	-1.3
3,802,555	+		GFF3765	0.48	-0.4
3,802,556	+		GFF3765	0.48	-0.3
3,802,556	+		GFF3765	0.48	+0.2
3,802,562	-		GFF3765	0.49	-2.6