Strain Fitness in Sphingobium sp. HT1-2 around GFF3761

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,798,308	+				-0.3
3,798,311	-				-0.6
3,798,311	-				+0.4
3,798,325	-				-0.4
3,798,331	-				-1.6
3,798,340	+				-0.8
3,798,367	+				-0.2
3,798,369	-				-0.3
3,798,380	-				-2.6
3,798,381	-				-0.1
3,798,395	-				-1.8
3,798,401	+				-1.3
3,798,414	-				-1.6
3,798,414	-				-0.2
3,798,427	+				+0.0
3,798,446	+				-1.4
3,798,446	+				-2.6
3,798,454	-				-2.4
3,798,458	-				-1.1
3,798,467	+		GFF3760	0.11	-0.9
3,798,480	-		GFF3760	0.12	-1.0
3,798,500	-		GFF3760	0.15	-0.9
3,798,511	-		GFF3760	0.16	-1.1
3,798,517	+		GFF3760	0.17	-1.1
3,798,562	+		GFF3760	0.22	+0.1
3,798,573	+		GFF3760	0.23	-0.6
3,798,573	+		GFF3760	0.23	-0.5
3,798,573	+		GFF3760	0.23	+0.3
3,798,573	+		GFF3760	0.23	-0.9
3,798,573	+		GFF3760	0.23	-0.7
3,798,573	+		GFF3760	0.23	-0.0
3,798,581	-		GFF3760	0.24	-1.7
3,798,581	-		GFF3760	0.24	-2.1
3,798,581	-		GFF3760	0.24	-0.5
3,798,581	-		GFF3760	0.24	+0.5
3,798,581	-		GFF3760	0.24	-0.8
3,798,581	-		GFF3760	0.24	+0.3
3,798,583	+		GFF3760	0.25	-2.0
3,798,590	-		GFF3760	0.25	-0.5
3,798,591	-		GFF3760	0.26	-2.4
3,798,592	+		GFF3760	0.26	-1.6
3,798,592	+		GFF3760	0.26	+0.3
3,798,592	+		GFF3760	0.26	-1.2
3,798,600	-		GFF3760	0.27	+0.3
3,798,600	-		GFF3760	0.27	-1.8
3,798,602	+		GFF3760	0.27	+0.7
3,798,610	-		GFF3760	0.28	-3.6
3,798,612	+		GFF3760	0.28	+0.0
3,798,619	-		GFF3760	0.29	-1.4
3,798,619	-		GFF3760	0.29	-1.2
3,798,627	-		GFF3760	0.30	-0.1
3,798,648	-		GFF3760	0.32	-2.3
3,798,650	+		GFF3760	0.33	-1.2
3,798,651	+		GFF3760	0.33	-0.0
3,798,652	+		GFF3760	0.33	-2.3
3,798,658	-		GFF3760	0.33	-0.9
3,798,680	+		GFF3760	0.36	-2.1
3,798,680	+		GFF3760	0.36	-0.8
3,798,685	+		GFF3760	0.37	-2.4
3,798,685	+		GFF3760	0.37	-0.2
3,798,688	-		GFF3760	0.37	-0.8
3,798,688	-		GFF3760	0.37	-1.2
3,798,708	+		GFF3760	0.39	+0.3
3,798,725	+		GFF3760	0.41	+0.6
3,798,725	+		GFF3760	0.41	-1.4
3,798,725	+		GFF3760	0.41	+1.8
3,798,730	+		GFF3760	0.42	-1.3
3,798,730	+		GFF3760	0.42	-1.1
3,798,731	+		GFF3760	0.42	-0.7
3,798,731	+		GFF3760	0.42	+0.8
3,798,731	+		GFF3760	0.42	-0.4
3,798,732	-		GFF3760	0.42	-0.7
3,798,732	-		GFF3760	0.42	-0.1
3,798,733	-		GFF3760	0.42	+0.5
3,798,739	-		GFF3760	0.43	-0.2
3,798,739	-		GFF3760	0.43	-1.7
3,798,808	+		GFF3760	0.51	-1.6
3,798,808	+		GFF3760	0.51	+0.3
3,798,816	-		GFF3760	0.52	-0.6
3,798,816	-		GFF3760	0.52	-1.2
3,798,844	-		GFF3760	0.55	-2.1
3,798,866	+		GFF3760	0.58	-0.9
3,798,874	-		GFF3760	0.59	+0.2
3,798,874	-		GFF3760	0.59	+0.1
3,798,876	+		GFF3760	0.59	-1.4
3,798,883	+		GFF3760	0.60	-0.2
3,798,916	+		GFF3760	0.64	-1.2
3,798,916	+		GFF3760	0.64	-0.6
3,798,924	-		GFF3760	0.65	+0.2
3,798,924	-		GFF3760	0.65	+0.5
3,798,924	-		GFF3760	0.65	+0.0
3,798,942	+		GFF3760	0.67	-1.6
3,798,950	+		GFF3760	0.68	-1.3
3,798,958	+		GFF3760	0.69	-0.7
3,798,958	-		GFF3760	0.69	-1.0
3,798,958	-		GFF3760	0.69	-0.7
3,798,958	-		GFF3760	0.69	+0.3
3,798,959	-		GFF3760	0.69	+0.6
3,798,966	-		GFF3760	0.70	-0.7
3,798,979	+		GFF3760	0.71	-2.8
3,798,979	+		GFF3760	0.71	-0.4
3,798,985	-		GFF3760	0.72	-1.5
3,798,985	-		GFF3760	0.72	-1.7
3,799,010	+		GFF3760	0.75	-1.6
3,799,028	-		GFF3760	0.77	-1.8
3,799,077	-		GFF3760	0.83	+0.3
3,799,100	-		GFF3760	0.86	-0.7
3,799,161	+				+0.3
3,799,166	+				+0.3
3,799,166	+				-2.3
3,799,174	-				-1.4
3,799,174	-				-0.9
3,799,174	-				+0.1
3,799,182	-				+0.7
3,799,195	-				-1.8
3,799,221	+				-0.1
3,799,221	+				+0.4
3,799,272	-				+0.6
3,799,287	-				-0.8
3,799,316	-				-0.2
3,799,329	+				+1.7
3,799,329	+				-0.2
3,799,329	+				-1.3
3,799,329	+				-2.8
3,799,329	+				-0.4
3,799,337	-				+1.0
3,799,337	-				-1.3
3,799,337	-				-0.2
3,799,337	-				+0.7
3,799,337	-				-0.9
3,799,339	+				+0.9
3,799,347	-				-0.7
3,799,347	-				-0.4
3,799,357	-		GFF3761	0.10	-2.3
3,799,385	-		GFF3761	0.15	+0.9
3,799,385	-		GFF3761	0.15	-0.9
3,799,399	+		GFF3761	0.18	+0.8
3,799,405	+		GFF3761	0.19	-1.5
3,799,408	-		GFF3761	0.20	+0.6
3,799,413	-		GFF3761	0.20	+0.5
3,799,437	+		GFF3761	0.25	-3.2
3,799,439	+		GFF3761	0.25	-0.9
3,799,447	-		GFF3761	0.27	+0.5
3,799,454	+		GFF3761	0.28	+0.6
3,799,454	+		GFF3761	0.28	+2.5
3,799,454	+		GFF3761	0.28	-0.3
3,799,454	+		GFF3761	0.28	+0.0
3,799,454	+		GFF3761	0.28	+0.1
3,799,454	+		GFF3761	0.28	-0.7
3,799,454	+		GFF3761	0.28	-0.1
3,799,462	-		GFF3761	0.30	+1.5
3,799,462	-		GFF3761	0.30	+1.2
3,799,462	-		GFF3761	0.30	+0.8
3,799,462	-		GFF3761	0.30	-0.5
3,799,472	+		GFF3761	0.31	-0.6
3,799,472	+		GFF3761	0.31	+0.4
3,799,472	-		GFF3761	0.31	-0.5
3,799,480	-		GFF3761	0.33	+1.0
3,799,480	-		GFF3761	0.33	+0.0
3,799,487	+		GFF3761	0.34	+0.3
3,799,487	+		GFF3761	0.34	-0.2
3,799,487	+		GFF3761	0.34	+0.7
3,799,487	+		GFF3761	0.34	-0.3
3,799,487	+		GFF3761	0.34	-2.6
3,799,495	-		GFF3761	0.36	-1.3
3,799,495	-		GFF3761	0.36	+1.4
3,799,495	-		GFF3761	0.36	+0.9
3,799,495	-		GFF3761	0.36	-0.9
3,799,495	-		GFF3761	0.36	-1.6
3,799,495	-		GFF3761	0.36	-0.3
3,799,512	-		GFF3761	0.39	-1.0
3,799,521	+		GFF3761	0.41	-0.5
3,799,521	+		GFF3761	0.41	+1.3
3,799,521	+		GFF3761	0.41	-0.3
3,799,521	+		GFF3761	0.41	-1.4
3,799,521	+		GFF3761	0.41	+0.1
3,799,521	+		GFF3761	0.41	-1.3
3,799,521	+		GFF3761	0.41	+0.8
3,799,528	+		GFF3761	0.42	-0.4
3,799,529	-		GFF3761	0.42	+0.4
3,799,529	-		GFF3761	0.42	-0.0
3,799,529	-		GFF3761	0.42	-0.0
3,799,529	-		GFF3761	0.42	-0.5
3,799,560	+		GFF3761	0.48	-0.4
3,799,563	+		GFF3761	0.48	-2.1
3,799,596	+		GFF3761	0.55	-0.3
3,799,596	-		GFF3761	0.55	-0.1
3,799,604	-		GFF3761	0.56	-0.6
3,799,604	-		GFF3761	0.56	+0.1
3,799,618	-		GFF3761	0.59	-1.0
3,799,618	-		GFF3761	0.59	+0.9
3,799,688	-		GFF3761	0.72	+0.5
3,799,698	-		GFF3761	0.74	+0.2
3,799,698	-		GFF3761	0.74	-0.2
3,799,698	-		GFF3761	0.74	-0.1
3,799,746	+		GFF3761	0.82	-2.2
3,799,746	+		GFF3761	0.82	-0.1
3,799,754	-		GFF3761	0.84	-2.4
3,799,765	+		GFF3761	0.86	-0.6
3,799,770	+		GFF3761	0.87	-0.4
3,799,789	+				+0.2
3,799,792	-				-2.4
3,799,794	+				-1.2
3,799,796	+				-0.2
3,799,801	+				-0.2
3,799,801	+				+0.2
3,799,801	+				-0.4
3,799,807	-				-0.5
3,799,809	-				+0.0
3,799,809	-				+0.3
3,799,816	+				+0.2
3,799,847	-				-0.3
3,799,907	+				-1.2
3,799,907	+				+0.7
3,799,915	-				+0.3
3,799,959	-				-1.3
3,799,975	-				+0.1
3,799,976	-				-0.6
3,799,978	+				-1.3
3,800,031	+		GFF3762	0.11	-0.2
3,800,034	-		GFF3762	0.11	+0.8
3,800,034	-		GFF3762	0.11	-0.3
3,800,052	+		GFF3762	0.13	-1.4
3,800,060	-		GFF3762	0.14	-0.1
3,800,062	+		GFF3762	0.14	-2.3
3,800,062	+		GFF3762	0.14	-0.5
3,800,062	+		GFF3762	0.14	-1.7
3,800,062	+		GFF3762	0.14	+0.7
3,800,062	+		GFF3762	0.14	+0.3
3,800,065	-		GFF3762	0.14	-1.6
3,800,065	-		GFF3762	0.14	-0.0
3,800,070	-		GFF3762	0.15	+2.2
3,800,079	-		GFF3762	0.16	-2.5
3,800,079	-		GFF3762	0.16	+0.2
3,800,084	-		GFF3762	0.16	-0.4
3,800,084	-		GFF3762	0.16	+0.8
3,800,097	+		GFF3762	0.17	-0.2
3,800,097	+		GFF3762	0.17	-0.6
3,800,097	+		GFF3762	0.17	-0.7
3,800,097	+		GFF3762	0.17	-1.2
3,800,102	+		GFF3762	0.18	-0.4
3,800,102	+		GFF3762	0.18	-1.3
3,800,102	+		GFF3762	0.18	+0.4
3,800,102	+		GFF3762	0.18	-0.4
3,800,105	-		GFF3762	0.18	-2.2
3,800,105	-		GFF3762	0.18	-1.2
3,800,105	-		GFF3762	0.18	-2.2
3,800,105	-		GFF3762	0.18	+0.5
3,800,105	-		GFF3762	0.18	-0.0
3,800,105	-		GFF3762	0.18	-0.6
3,800,122	+		GFF3762	0.20	-0.6
3,800,122	+		GFF3762	0.20	+0.7
3,800,122	+		GFF3762	0.20	-0.7
3,800,122	+		GFF3762	0.20	+0.3
3,800,122	+		GFF3762	0.20	+0.4
3,800,122	+		GFF3762	0.20	-1.1
3,800,130	-		GFF3762	0.20	-0.4
3,800,130	-		GFF3762	0.20	-0.8
3,800,142	-		GFF3762	0.22	+0.8
3,800,142	-		GFF3762	0.22	-1.2
3,800,184	+		GFF3762	0.25	+0.7
3,800,191	+		GFF3762	0.26	+0.2
3,800,196	+		GFF3762	0.27	-1.3
3,800,240	+		GFF3762	0.31	+0.6
3,800,248	-		GFF3762	0.31	-0.6
3,800,255	+		GFF3762	0.32	+0.4
3,800,304	+		GFF3762	0.37	+0.4
3,800,304	+		GFF3762	0.37	-0.3
3,800,308	+		GFF3762	0.37	-0.9
3,800,309	+		GFF3762	0.37	-0.9
3,800,316	-		GFF3762	0.38	-0.2
3,800,381	-		GFF3762	0.44	+0.6
3,800,386	-		GFF3762	0.44	+0.8
3,800,443	-		GFF3762	0.50	+0.6
3,800,445	+		GFF3762	0.50	-0.1
3,800,445	+		GFF3762	0.50	-1.6
3,800,445	+		GFF3762	0.50	-0.5
3,800,445	+		GFF3762	0.50	+0.8
3,800,445	+		GFF3762	0.50	-0.4
3,800,445	+		GFF3762	0.50	-0.8
3,800,453	-		GFF3762	0.50	-1.7
3,800,453	-		GFF3762	0.50	-2.3
3,800,453	-		GFF3762	0.50	-1.4
3,800,453	-		GFF3762	0.50	-0.3
3,800,453	-		GFF3762	0.50	+0.3
3,800,453	-		GFF3762	0.50	-0.6
3,800,453	-		GFF3762	0.50	+0.4
3,800,453	-		GFF3762	0.50	+0.4
3,800,453	-		GFF3762	0.50	+1.4
3,800,457	-		GFF3762	0.51	-0.3
3,800,475	+		GFF3762	0.53	+0.4
3,800,475	+		GFF3762	0.53	+0.3
3,800,479	-		GFF3762	0.53	+0.4
3,800,483	-		GFF3762	0.53	+0.9
3,800,483	-		GFF3762	0.53	+1.3
3,800,483	-		GFF3762	0.53	-1.3
3,800,485	+		GFF3762	0.53	-0.7
3,800,488	-		GFF3762	0.54	+0.4
3,800,490	+		GFF3762	0.54	+0.5
3,800,490	+		GFF3762	0.54	-0.4
3,800,493	-		GFF3762	0.54	+0.2
3,800,498	-		GFF3762	0.55	-1.9
3,800,498	-		GFF3762	0.55	+0.1
3,800,560	+		GFF3762	0.60	-0.5
3,800,560	+		GFF3762	0.60	-1.7
3,800,560	+		GFF3762	0.60	-1.7
3,800,568	-		GFF3762	0.61	-3.2
3,800,570	+		GFF3762	0.61	-0.1
3,800,576	-		GFF3762	0.62	-0.6
3,800,578	-		GFF3762	0.62	+0.1
3,800,599	+		GFF3762	0.64	+1.1
3,800,680	+		GFF3762	0.72	+0.3
3,800,680	+		GFF3762	0.72	-0.6
3,800,680	+		GFF3762	0.72	+0.2
3,800,680	+		GFF3762	0.72	-2.0
3,800,680	+		GFF3762	0.72	-1.2
3,800,688	-		GFF3762	0.72	+0.2
3,800,688	-		GFF3762	0.72	+0.7
3,800,688	-		GFF3762	0.72	-0.5
3,800,688	-		GFF3762	0.72	+0.0
3,800,727	-		GFF3762	0.76	+0.0
3,800,733	-		GFF3762	0.77	-0.1
3,800,737	-		GFF3762	0.77	-1.2
3,800,746	-		GFF3762	0.78	+0.4
3,800,761	+		GFF3762	0.79	-0.3
3,800,767	-		GFF3762	0.80	-0.2
3,800,777	+		GFF3762	0.81	-2.3
3,800,785	-		GFF3762	0.81	-0.2
3,800,785	-		GFF3762	0.81	-2.4