Strain Fitness in Sphingobium sp. HT1-2 around GFF3749

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,789,305	+		GFF3747	0.55	-0.3
3,789,316	+		GFF3747	0.56	-0.7
3,789,316	+		GFF3747	0.56	+0.1
3,789,316	+		GFF3747	0.56	-0.3
3,789,316	+		GFF3747	0.56	+0.6
3,789,316	+		GFF3747	0.56	-2.3
3,789,324	-		GFF3747	0.57	+0.4
3,789,324	-		GFF3747	0.57	+0.3
3,789,324	-		GFF3747	0.57	+0.0
3,789,330	-		GFF3747	0.58	-1.3
3,789,353	-		GFF3747	0.60	-1.7
3,789,365	-		GFF3747	0.62	-1.1
3,789,391	-		GFF3747	0.65	-0.2
3,789,432	+		GFF3747	0.69	-1.3
3,789,432	+		GFF3747	0.69	+0.1
3,789,440	-		GFF3747	0.70	-1.2
3,789,444	+		GFF3747	0.70	+0.8
3,789,449	+		GFF3747	0.71	-0.2
3,789,449	+		GFF3747	0.71	-1.9
3,789,454	+		GFF3747	0.72	-0.8
3,789,457	-		GFF3747	0.72	-0.7
3,789,472	-		GFF3747	0.74	-0.3
3,789,488	-		GFF3747	0.75	-0.9
3,789,491	+		GFF3747	0.76	+0.8
3,789,509	-		GFF3747	0.78	-1.8
3,789,511	+		GFF3747	0.78	-1.7
3,789,511	+		GFF3747	0.78	-1.3
3,789,518	-		GFF3747	0.79	-0.9
3,789,520	-		GFF3747	0.79	-1.1
3,789,541	-		GFF3747	0.81	+0.4
3,789,546	+		GFF3747	0.82	+0.7
3,789,552	+		GFF3747	0.82	-0.7
3,789,555	-		GFF3747	0.83	-0.4
3,789,561	+		GFF3747	0.83	-0.0
3,789,568	-		GFF3747	0.84	-2.3
3,789,636	+				-0.3
3,789,644	-				-0.3
3,789,673	-				-0.3
3,789,675	+				+1.3
3,789,675	+				+0.6
3,789,675	+				+1.7
3,789,683	-				-0.2
3,789,683	-				-0.2
3,789,683	-				-1.3
3,789,698	-				-0.3
3,789,707	+				-0.7
3,789,707	+				-0.2
3,789,715	-				-1.4
3,789,723	+				-0.6
3,789,740	-				+0.4
3,789,778	+				+0.4
3,789,778	+				-0.4
3,789,786	+				-2.6
3,789,786	+				-0.4
3,789,786	-				-0.5
3,789,786	-				+0.8
3,789,786	-				+1.1
3,789,786	-				+1.2
3,789,793	+				-0.9
3,789,794	-				-0.7
3,789,794	-				+0.3
3,789,794	-				-2.1
3,789,814	-				+1.0
3,789,814	-				-0.7
3,789,814	-				+1.1
3,789,824	+				-1.0
3,789,824	+				+0.2
3,789,825	-				+0.3
3,789,829	+				+1.0
3,789,832	-				+0.7
3,789,832	-				+0.8
3,789,832	-				-0.1
3,789,832	-				+0.1
3,789,845	+				-1.8
3,789,845	+				-0.9
3,789,845	+				-0.1
3,789,853	-				+0.1
3,789,853	-				-0.4
3,789,853	-				-0.3
3,789,853	-				+0.6
3,789,853	-				+1.6
3,789,892	+		GFF3748	0.13	-1.4
3,789,939	+		GFF3748	0.25	+0.2
3,789,993	-		GFF3748	0.38	-1.3
3,790,002	+		GFF3748	0.40	-0.6
3,790,026	+		GFF3748	0.46	-0.3
3,790,035	+		GFF3748	0.48	-0.8
3,790,035	+		GFF3748	0.48	+1.4
3,790,035	+		GFF3748	0.48	-0.7
3,790,035	+		GFF3748	0.48	+0.1
3,790,043	-		GFF3748	0.50	+0.7
3,790,043	-		GFF3748	0.50	-1.3
3,790,048	-		GFF3748	0.51	+0.0
3,790,130	+		GFF3748	0.72	+1.0
3,790,130	+		GFF3748	0.72	-0.7
3,790,170	-		GFF3748	0.81	-2.0
3,790,190	-		GFF3748	0.86	+1.2
3,790,239	+				+0.7
3,790,255	+				+0.4
3,790,255	+				+0.7
3,790,255	+				-0.7
3,790,255	+				-0.3
3,790,263	-				+1.4
3,790,278	+				+1.5
3,790,278	+				-0.4
3,790,278	+				+0.8
3,790,286	-				-0.3
3,790,286	-				-1.3
3,790,343	+				+0.3
3,790,408	+		GFF3749	0.16	+1.4
3,790,408	+		GFF3749	0.16	-0.3
3,790,434	-		GFF3749	0.20	-1.9
3,790,459	-		GFF3749	0.24	-0.9
3,790,492	+		GFF3749	0.28	-2.4
3,790,524	-		GFF3749	0.33	-1.4
3,790,524	-		GFF3749	0.33	-1.7
3,790,552	-		GFF3749	0.37	+0.1
3,790,587	-		GFF3749	0.42	+0.7
3,790,632	+		GFF3749	0.48	+0.4
3,790,638	+		GFF3749	0.49	-0.2
3,790,640	-		GFF3749	0.49	-0.2
3,790,690	+		GFF3749	0.57	-1.3
3,790,692	+		GFF3749	0.57	+0.4
3,790,698	-		GFF3749	0.58	+0.4
3,790,698	-		GFF3749	0.58	+0.1
3,790,722	+		GFF3749	0.61	+0.4
3,790,765	-		GFF3749	0.67	+1.3
3,790,766	-		GFF3749	0.67	-0.6
3,790,796	+		GFF3749	0.72	+1.3
3,790,796	-		GFF3749	0.72	-0.8
3,790,804	-		GFF3749	0.73	-1.2
3,790,804	-		GFF3749	0.73	-0.1
3,790,808	+		GFF3749	0.73	-0.7
3,790,816	-		GFF3749	0.75	-1.9
3,790,834	+		GFF3749	0.77	+0.0
3,790,904	+		GFF3749	0.87	+0.3
3,790,912	+		GFF3749	0.88	-0.4
3,790,912	+		GFF3749	0.88	-0.8
3,790,918	+		GFF3749	0.89	+0.7
3,790,933	+				+1.0
3,790,940	-				-0.7
3,790,942	+				-0.5
3,790,947	+				+0.2
3,790,947	+				-0.8
3,790,950	-				-0.2
3,790,963	+				+1.1
3,790,988	+				-0.4
3,790,988	+				-2.7
3,790,996	-				-0.3
3,790,996	-				+0.7
3,790,996	-				+0.8
3,790,996	-				+0.0
3,790,997	-				-2.1
3,791,003	-				-2.0
3,791,008	-				-0.6
3,791,010	-				-2.1
3,791,029	-				+0.4
3,791,041	-				+0.2
3,791,044	-				-0.7
3,791,044	-				-0.1
3,791,063	-		GFF3750	0.10	-1.7
3,791,067	+		GFF3750	0.11	-0.4
3,791,120	+		GFF3750	0.19	+0.9
3,791,149	-		GFF3750	0.23	-2.0
3,791,161	+		GFF3750	0.25	-1.3
3,791,186	+		GFF3750	0.29	-0.1
3,791,186	+		GFF3750	0.29	-0.2
3,791,244	+		GFF3750	0.38	+0.7
3,791,251	+		GFF3750	0.39	-0.4
3,791,254	-		GFF3750	0.40	-1.7
3,791,254	-		GFF3750	0.40	-0.3
3,791,259	-		GFF3750	0.40	+0.1
3,791,271	+		GFF3750	0.42	+0.9
3,791,300	+		GFF3750	0.47	-2.7
3,791,382	+		GFF3750	0.60	+0.3
3,791,382	+		GFF3750	0.60	-0.2
3,791,388	-		GFF3750	0.60	+0.1
3,791,390	-		GFF3750	0.61	+0.1
3,791,392	+		GFF3750	0.61	+0.4
3,791,392	+		GFF3750	0.61	+0.7
3,791,392	+		GFF3750	0.61	-0.1
3,791,392	+		GFF3750	0.61	-0.1
3,791,400	-		GFF3750	0.62	+0.5
3,791,400	-		GFF3750	0.62	-0.3
3,791,410	+		GFF3750	0.64	-1.3
3,791,415	+		GFF3750	0.65	-1.6
3,791,415	+		GFF3750	0.65	-1.9
3,791,428	-		GFF3750	0.67	-0.2
3,791,443	-		GFF3750	0.69	+0.9
3,791,444	+		GFF3750	0.69	+0.7
3,791,451	-		GFF3750	0.70	-0.5
3,791,452	-		GFF3750	0.70	+0.9
3,791,471	+		GFF3750	0.73	+1.3
3,791,491	-		GFF3750	0.76	-1.9
3,791,493	+		GFF3750	0.77	+0.6
3,791,493	+		GFF3750	0.77	-0.9
3,791,498	+		GFF3750	0.78	+0.5
3,791,513	-		GFF3750	0.80	-1.7
3,791,517	+		GFF3750	0.80	+0.8
3,791,517	+		GFF3750	0.80	-0.4
3,791,522	+		GFF3750	0.81	-2.1
3,791,540	+		GFF3750	0.84	+0.5
3,791,541	+		GFF3750	0.84	+1.1
3,791,561	-		GFF3750	0.87	+1.1
3,791,580	+				+0.5
3,791,610	+				-0.1
3,791,610	+				-1.2
3,791,626	+				-0.3
3,791,634	-				-1.2
3,791,636	+				-1.7
3,791,643	+				+0.6
3,791,643	+				+0.3
3,791,651	-				-1.8
3,791,653	+				+0.3
3,791,653	+				-0.4
3,791,653	+				+0.4
3,791,658	+				-0.3
3,791,658	+				+0.1
3,791,658	+				-0.3
3,791,658	+				-0.6
3,791,661	-				-0.4
3,791,661	-				-0.4
3,791,661	-				-0.0
3,791,666	-				-0.3
3,791,666	-				-0.9
3,791,695	-				-0.3
3,791,718	+				+0.5
3,791,742	+		GFF3751	0.12	+1.2
3,791,776	+		GFF3751	0.17	-0.2
3,791,784	-		GFF3751	0.19	+0.2
3,791,802	-		GFF3751	0.21	+0.4
3,791,820	+		GFF3751	0.24	-1.1
3,791,837	+		GFF3751	0.26	-0.6
3,791,837	+		GFF3751	0.26	-1.1
3,791,842	+		GFF3751	0.27	-0.0
3,791,842	+		GFF3751	0.27	-0.6
3,791,842	+		GFF3751	0.27	+0.8
3,791,850	-		GFF3751	0.28	+0.1
3,791,850	-		GFF3751	0.28	-0.8
3,791,850	-		GFF3751	0.28	-2.2
3,791,850	-		GFF3751	0.28	-0.6
3,791,850	-		GFF3751	0.28	-0.2
3,791,850	-		GFF3751	0.28	+0.6
3,791,873	+		GFF3751	0.31	+0.8
3,791,878	+		GFF3751	0.32	-0.4
3,791,908	-		GFF3751	0.36	+0.6
3,791,908	-		GFF3751	0.36	+0.5
3,791,924	+		GFF3751	0.39	+1.0
3,791,932	-		GFF3751	0.40	-1.3
3,791,980	+		GFF3751	0.47	-0.6
3,791,980	+		GFF3751	0.47	+0.6
3,791,980	+		GFF3751	0.47	-0.3
3,791,980	+		GFF3751	0.47	-3.1
3,791,986	+		GFF3751	0.48	+1.0
3,791,986	+		GFF3751	0.48	-0.1
3,791,986	+		GFF3751	0.48	-0.6
3,791,986	+		GFF3751	0.48	-0.2
3,791,986	+		GFF3751	0.48	-0.3
3,791,988	-		GFF3751	0.48	-0.4
3,791,988	-		GFF3751	0.48	+0.0
3,791,988	-		GFF3751	0.48	+1.3
3,791,993	-		GFF3751	0.49	-2.2
3,791,994	-		GFF3751	0.49	-0.1
3,791,994	-		GFF3751	0.49	+0.2