Strain Fitness in Sphingobium sp. HT1-2 around GFF3741

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,781,645	+		GFF3739	0.33	-1.9
3,781,645	+		GFF3739	0.33	-0.2
3,781,645	+		GFF3739	0.33	-1.7
3,781,645	+		GFF3739	0.33	-0.4
3,781,645	+		GFF3739	0.33	-0.4
3,781,653	-		GFF3739	0.36	+1.0
3,781,653	-		GFF3739	0.36	+0.3
3,781,653	-		GFF3739	0.36	-1.7
3,781,665	+		GFF3739	0.40	-1.1
3,781,668	-		GFF3739	0.41	+1.2
3,781,669	+		GFF3739	0.41	-1.2
3,781,669	+		GFF3739	0.41	+0.7
3,781,669	+		GFF3739	0.41	+0.1
3,781,670	+		GFF3739	0.42	+0.1
3,781,677	-		GFF3739	0.44	+1.0
3,781,677	-		GFF3739	0.44	-1.0
3,781,678	-		GFF3739	0.45	-0.7
3,781,690	-		GFF3739	0.49	-1.7
3,781,707	+		GFF3739	0.55	-0.2
3,781,712	+		GFF3739	0.57	-0.5
3,781,734	+		GFF3739	0.65	-0.5
3,781,739	+		GFF3739	0.67	-0.8
3,781,756	-		GFF3739	0.73	-0.7
3,781,782	+		GFF3739	0.83	-0.8
3,781,809	+				-1.1
3,781,860	+				-0.4
3,781,866	+				-2.7
3,781,892	-				-0.0
3,781,925	-		GFF3740	0.13	-0.6
3,781,928	-		GFF3740	0.13	+0.8
3,781,940	+		GFF3740	0.15	-0.4
3,781,948	-		GFF3740	0.16	+0.4
3,781,951	+		GFF3740	0.16	-1.2
3,781,951	+		GFF3740	0.16	-0.3
3,781,970	+		GFF3740	0.19	-0.9
3,781,970	+		GFF3740	0.19	-0.2
3,781,978	-		GFF3740	0.20	-0.7
3,781,984	+		GFF3740	0.20	-1.2
3,781,984	+		GFF3740	0.20	-0.4
3,781,984	+		GFF3740	0.20	+0.8
3,781,989	+		GFF3740	0.21	-2.6
3,781,992	-		GFF3740	0.21	-0.6
3,781,994	-		GFF3740	0.22	-0.1
3,781,995	-		GFF3740	0.22	-0.4
3,781,997	+		GFF3740	0.22	+0.3
3,782,005	-		GFF3740	0.23	-1.2
3,782,013	+		GFF3740	0.24	-0.2
3,782,019	-		GFF3740	0.25	+0.1
3,782,038	+		GFF3740	0.27	+0.9
3,782,038	+		GFF3740	0.27	+0.7
3,782,039	+		GFF3740	0.27	-1.6
3,782,039	+		GFF3740	0.27	+0.4
3,782,046	-		GFF3740	0.28	-1.5
3,782,047	-		GFF3740	0.28	+0.1
3,782,062	+		GFF3740	0.30	-0.9
3,782,062	+		GFF3740	0.30	-0.8
3,782,070	-		GFF3740	0.31	-2.6
3,782,071	+		GFF3740	0.31	+0.0
3,782,072	+		GFF3740	0.32	+1.0
3,782,082	+		GFF3740	0.33	+0.0
3,782,085	-		GFF3740	0.33	-1.7
3,782,085	-		GFF3740	0.33	-0.4
3,782,090	-		GFF3740	0.34	+1.2
3,782,097	+		GFF3740	0.35	-0.6
3,782,097	+		GFF3740	0.35	+1.1
3,782,100	-		GFF3740	0.35	+0.5
3,782,113	-		GFF3740	0.37	-0.3
3,782,114	+		GFF3740	0.37	+1.3
3,782,125	+		GFF3740	0.38	-1.0
3,782,142	+		GFF3740	0.40	+0.9
3,782,144	+		GFF3740	0.41	+1.1
3,782,144	+		GFF3740	0.41	+0.2
3,782,144	+		GFF3740	0.41	-0.6
3,782,149	+		GFF3740	0.41	+0.5
3,782,149	+		GFF3740	0.41	-0.4
3,782,149	+		GFF3740	0.41	+0.0
3,782,149	+		GFF3740	0.41	+0.8
3,782,149	+		GFF3740	0.41	+0.5
3,782,149	+		GFF3740	0.41	-0.4
3,782,152	-		GFF3740	0.42	-1.1
3,782,152	-		GFF3740	0.42	+1.2
3,782,157	-		GFF3740	0.42	+0.2
3,782,157	-		GFF3740	0.42	-0.3
3,782,157	-		GFF3740	0.42	+0.4
3,782,157	-		GFF3740	0.42	+1.3
3,782,157	-		GFF3740	0.42	+1.0
3,782,157	-		GFF3740	0.42	+0.4
3,782,157	-		GFF3740	0.42	+0.3
3,782,157	-		GFF3740	0.42	-1.0
3,782,177	-		GFF3740	0.45	-1.7
3,782,179	+		GFF3740	0.45	-0.5
3,782,180	+		GFF3740	0.45	+2.0
3,782,185	+		GFF3740	0.46	+0.0
3,782,188	-		GFF3740	0.46	-0.7
3,782,188	-		GFF3740	0.46	-0.1
3,782,188	-		GFF3740	0.46	-1.8
3,782,193	-		GFF3740	0.47	-0.4
3,782,200	-		GFF3740	0.48	-1.6
3,782,219	-		GFF3740	0.50	-1.0
3,782,223	+		GFF3740	0.51	-0.1
3,782,242	-		GFF3740	0.53	-0.6
3,782,255	+		GFF3740	0.55	-0.0
3,782,255	+		GFF3740	0.55	-2.5
3,782,255	+		GFF3740	0.55	+1.6
3,782,255	+		GFF3740	0.55	+0.2
3,782,255	+		GFF3740	0.55	-0.5
3,782,263	-		GFF3740	0.56	+1.3
3,782,263	-		GFF3740	0.56	+0.4
3,782,263	-		GFF3740	0.56	-1.6
3,782,263	-		GFF3740	0.56	-1.9
3,782,263	-		GFF3740	0.56	+0.0
3,782,263	-		GFF3740	0.56	+0.6
3,782,263	-		GFF3740	0.56	+0.0
3,782,263	-		GFF3740	0.56	-2.1
3,782,263	-		GFF3740	0.56	+0.7
3,782,268	+		GFF3740	0.57	+1.2
3,782,276	-		GFF3740	0.58	-0.7
3,782,281	+		GFF3740	0.58	+1.3
3,782,281	+		GFF3740	0.58	+0.5
3,782,281	+		GFF3740	0.58	+0.2
3,782,281	+		GFF3740	0.58	+0.4
3,782,281	+		GFF3740	0.58	+0.1
3,782,281	+		GFF3740	0.58	-0.7
3,782,284	-		GFF3740	0.59	+0.4
3,782,286	+		GFF3740	0.59	+1.4
3,782,286	+		GFF3740	0.59	-1.3
3,782,286	+		GFF3740	0.59	-0.0
3,782,288	+		GFF3740	0.59	+0.3
3,782,289	-		GFF3740	0.59	-1.0
3,782,289	-		GFF3740	0.59	+0.9
3,782,289	-		GFF3740	0.59	-0.0
3,782,289	-		GFF3740	0.59	-0.1
3,782,289	-		GFF3740	0.59	+0.6
3,782,294	-		GFF3740	0.60	-0.6
3,782,294	-		GFF3740	0.60	+0.7
3,782,294	-		GFF3740	0.60	-1.2
3,782,297	-		GFF3740	0.60	-0.9
3,782,314	+		GFF3740	0.62	+1.1
3,782,319	+		GFF3740	0.63	+0.6
3,782,324	+		GFF3740	0.64	-1.2
3,782,332	-		GFF3740	0.65	-0.1
3,782,332	-		GFF3740	0.65	+0.0
3,782,332	-		GFF3740	0.65	+0.2
3,782,337	+		GFF3740	0.65	-0.2
3,782,402	+		GFF3740	0.74	-1.4
3,782,402	+		GFF3740	0.74	+1.6
3,782,402	+		GFF3740	0.74	+0.7
3,782,410	-		GFF3740	0.75	-0.2
3,782,410	-		GFF3740	0.75	+0.6
3,782,410	-		GFF3740	0.75	-0.1
3,782,410	-		GFF3740	0.75	+0.9
3,782,410	-		GFF3740	0.75	-2.7
3,782,410	-		GFF3740	0.75	-0.7
3,782,419	+		GFF3740	0.76	+0.3
3,782,419	+		GFF3740	0.76	-0.1
3,782,442	+		GFF3740	0.79	-1.6
3,782,459	+		GFF3740	0.81	+0.2
3,782,459	+		GFF3740	0.81	-0.2
3,782,459	+		GFF3740	0.81	+0.2
3,782,459	+		GFF3740	0.81	-0.4
3,782,467	-		GFF3740	0.82	+0.4
3,782,467	-		GFF3740	0.82	+0.1
3,782,467	-		GFF3740	0.82	+0.2
3,782,503	+		GFF3740	0.87	+0.0
3,782,547	+				+0.4
3,782,553	-				-1.7
3,782,562	+				+1.3
3,782,564	+				-2.0
3,782,564	+				-0.2
3,782,564	+				-1.0
3,782,572	-				+0.4
3,782,572	-				+0.6
3,782,572	-				+0.0
3,782,575	+				+0.8
3,782,575	+				-0.8
3,782,575	+				-0.3
3,782,575	+				-0.6
3,782,575	+				+0.9
3,782,578	-				-0.4
3,782,583	-				-1.7
3,782,583	-				-0.0
3,782,583	-				-0.5
3,782,588	-				+0.3
3,782,588	-				-0.9
3,782,591	+				-0.2
3,782,599	-				-0.9
3,782,601	+				-2.0
3,782,601	+				-0.2
3,782,606	+				-0.7
3,782,608	+				-1.8
3,782,609	-				+1.9
3,782,614	-				+0.5
3,782,616	-				-0.1
3,782,621	+				-0.5
3,782,629	-				-0.1
3,782,629	-				+0.6
3,782,629	-				+0.7
3,782,629	-				+1.3
3,782,629	-				+0.3
3,782,650	-				+1.2
3,782,673	-				-0.9
3,782,675	+				+0.3
3,782,686	+				+1.1
3,782,695	+				-0.6
3,782,698	-				+1.6
3,782,702	+				-1.7
3,782,703	-				+0.1
3,782,710	+				+0.8
3,782,716	-				+1.0
3,782,719	+				+0.4
3,782,719	+				-0.4
3,782,721	-				+1.8
3,782,724	+				+0.8
3,782,733	-		GFF3741	0.11	+0.7
3,782,735	-		GFF3741	0.11	+0.6
3,782,767	+		GFF3741	0.14	+0.9
3,782,770	-		GFF3741	0.14	-0.9
3,782,775	-		GFF3741	0.14	+0.0
3,782,775	-		GFF3741	0.14	+1.4
3,782,775	-		GFF3741	0.14	-2.4
3,782,796	+		GFF3741	0.16	-0.7
3,782,799	-		GFF3741	0.17	-1.7
3,782,799	-		GFF3741	0.17	-1.4
3,782,799	-		GFF3741	0.17	-0.7
3,782,799	-		GFF3741	0.17	-0.4
3,782,799	-		GFF3741	0.17	-0.9
3,782,799	-		GFF3741	0.17	-0.1
3,782,818	+		GFF3741	0.18	+0.4
3,782,827	+		GFF3741	0.19	-0.3
3,782,827	+		GFF3741	0.19	-0.6
3,782,835	+		GFF3741	0.20	-1.4
3,782,835	+		GFF3741	0.20	-1.2
3,782,835	-		GFF3741	0.20	-1.2
3,782,835	-		GFF3741	0.20	+0.9
3,782,855	+		GFF3741	0.21	+0.3
3,782,886	+		GFF3741	0.24	+0.7
3,782,908	+		GFF3741	0.26	+1.3
3,782,940	+		GFF3741	0.29	+0.0
3,782,940	+		GFF3741	0.29	+0.8
3,782,948	-		GFF3741	0.30	-0.6
3,782,948	-		GFF3741	0.30	+0.5
3,782,948	-		GFF3741	0.30	+0.4
3,782,948	-		GFF3741	0.30	+0.6
3,782,953	-		GFF3741	0.30	+1.0
3,782,983	-		GFF3741	0.33	-0.4
3,783,042	-		GFF3741	0.38	-0.6
3,783,048	+		GFF3741	0.38	-1.4
3,783,048	+		GFF3741	0.38	+1.3
3,783,056	-		GFF3741	0.39	-0.8
3,783,056	-		GFF3741	0.39	-0.4
3,783,056	-		GFF3741	0.39	-2.0
3,783,056	-		GFF3741	0.39	+0.3
3,783,066	+		GFF3741	0.40	+0.4
3,783,073	-		GFF3741	0.41	-0.8
3,783,078	-		GFF3741	0.41	+1.1
3,783,078	-		GFF3741	0.41	-1.8
3,783,097	-		GFF3741	0.43	-0.0
3,783,107	-		GFF3741	0.44	+0.2
3,783,108	-		GFF3741	0.44	+0.0
3,783,132	+		GFF3741	0.46	+0.7
3,783,132	+		GFF3741	0.46	-0.6
3,783,132	+		GFF3741	0.46	-1.4
3,783,140	-		GFF3741	0.47	-0.5
3,783,140	-		GFF3741	0.47	+0.4
3,783,140	-		GFF3741	0.47	+0.2
3,783,140	-		GFF3741	0.47	+0.2
3,783,140	-		GFF3741	0.47	+1.3
3,783,140	-		GFF3741	0.47	+0.4
3,783,140	-		GFF3741	0.47	+0.3
3,783,140	-		GFF3741	0.47	-0.4
3,783,142	+		GFF3741	0.47	-1.7
3,783,145	-		GFF3741	0.47	+1.1
3,783,152	-		GFF3741	0.48	+0.0
3,783,186	+		GFF3741	0.51	-0.3
3,783,186	+		GFF3741	0.51	+0.7
3,783,191	+		GFF3741	0.51	+0.9
3,783,199	-		GFF3741	0.52	-1.6
3,783,288	+		GFF3741	0.60	+0.0
3,783,288	+		GFF3741	0.60	-0.6
3,783,291	-		GFF3741	0.60	-1.4
3,783,294	+		GFF3741	0.60	-0.7
3,783,296	-		GFF3741	0.60	+0.2
3,783,296	-		GFF3741	0.60	-0.1
3,783,296	-		GFF3741	0.60	-2.6
3,783,296	-		GFF3741	0.60	+0.3
3,783,311	+		GFF3741	0.62	+1.0
3,783,334	+		GFF3741	0.64	+0.3
3,783,334	+		GFF3741	0.64	+0.8
3,783,361	+		GFF3741	0.66	+0.4
3,783,361	+		GFF3741	0.66	-0.1
3,783,361	-		GFF3741	0.66	+0.0
3,783,369	-		GFF3741	0.67	+0.5
3,783,369	-		GFF3741	0.67	+1.3
3,783,369	-		GFF3741	0.67	-0.2
3,783,369	-		GFF3741	0.67	-0.1
3,783,369	-		GFF3741	0.67	+1.2
3,783,369	-		GFF3741	0.67	-0.4
3,783,386	+		GFF3741	0.68	+0.3
3,783,396	+		GFF3741	0.69	+0.3
3,783,396	+		GFF3741	0.69	-1.9
3,783,399	-		GFF3741	0.69	+0.0
3,783,404	-		GFF3741	0.70	-0.4
3,783,404	-		GFF3741	0.70	-0.6
3,783,410	+		GFF3741	0.70	+0.3
3,783,416	+		GFF3741	0.71	+0.4
3,783,425	-		GFF3741	0.72	-0.8
3,783,439	-		GFF3741	0.73	+0.6
3,783,441	+		GFF3741	0.73	+0.4
3,783,441	+		GFF3741	0.73	-1.7
3,783,443	-		GFF3741	0.73	-0.6
3,783,449	+		GFF3741	0.74	-0.2
3,783,449	-		GFF3741	0.74	+1.7
3,783,449	-		GFF3741	0.74	+0.1
3,783,471	+		GFF3741	0.76	+0.1
3,783,486	-		GFF3741	0.77	-0.4
3,783,488	+		GFF3741	0.77	-0.9
3,783,488	+		GFF3741	0.77	-1.7
3,783,488	+		GFF3741	0.77	+0.3
3,783,496	-		GFF3741	0.78	-0.8
3,783,496	-		GFF3741	0.78	-1.8
3,783,496	-		GFF3741	0.78	+0.2
3,783,496	-		GFF3741	0.78	+0.1
3,783,496	-		GFF3741	0.78	-0.2
3,783,528	+		GFF3741	0.81	-0.1
3,783,539	+		GFF3741	0.82	-0.3
3,783,549	+		GFF3741	0.82	+0.3
3,783,554	+		GFF3741	0.83	+0.1
3,783,562	-		GFF3741	0.84	-1.7
3,783,562	-		GFF3741	0.84	+1.8
3,783,562	-		GFF3741	0.84	+0.4
3,783,574	+		GFF3741	0.85	+0.4
3,783,576	+		GFF3741	0.85	-0.3
3,783,584	-		GFF3741	0.86	+0.4
3,783,586	-		GFF3741	0.86	+1.0
3,783,586	-		GFF3741	0.86	+0.6
3,783,613	+		GFF3741	0.88	+0.0
3,783,623	-		GFF3741	0.89	+0.3
3,783,623	-		GFF3741	0.89	+0.1
3,783,637	+				-0.6
3,783,637	+				-0.5
3,783,637	+				-1.4
3,783,637	+				+0.4
3,783,637	+				-0.5
3,783,637	+				+0.1
3,783,637	+				+1.3
3,783,637	+				-1.3
3,783,637	+				+0.9
3,783,640	-				-2.5
3,783,645	-				-1.6
3,783,645	-				+0.5
3,783,645	-				-2.6
3,783,645	-				-1.7
3,783,645	-				+0.3
3,783,645	-				-1.9
3,783,645	-				-1.2
3,783,651	-				-2.0
3,783,691	+				+0.3
3,783,693	+				+0.3
3,783,820	-				-0.7
3,783,828	+				+0.8
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