Strain Fitness in Sphingobium sp. HT1-2 around GFF3678

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,721,139	+		GFF3677	0.68	+0.5
3,721,165	+		GFF3677	0.70	-0.5
3,721,165	+		GFF3677	0.70	-0.8
3,721,231	+		GFF3677	0.72	-0.8
3,721,239	-		GFF3677	0.73	+0.1
3,721,248	-		GFF3677	0.73	-1.3
3,721,268	+		GFF3677	0.74	-0.2
3,721,268	+		GFF3677	0.74	-0.8
3,721,268	+		GFF3677	0.74	+1.4
3,721,268	+		GFF3677	0.74	-0.3
3,721,268	+		GFF3677	0.74	-1.8
3,721,268	+		GFF3677	0.74	-1.8
3,721,268	+		GFF3677	0.74	+0.5
3,721,268	+		GFF3677	0.74	+0.4
3,721,276	-		GFF3677	0.74	-1.1
3,721,283	+		GFF3677	0.74	+0.1
3,721,289	-		GFF3677	0.75	-0.6
3,721,311	-		GFF3677	0.76	+0.7
3,721,321	-		GFF3677	0.76	-0.0
3,721,325	-		GFF3677	0.76	+0.7
3,721,341	+		GFF3677	0.77	+2.0
3,721,349	-		GFF3677	0.77	-1.8
3,721,349	-		GFF3677	0.77	-0.8
3,721,349	-		GFF3677	0.77	-0.1
3,721,360	+		GFF3677	0.78	+1.4
3,721,406	+		GFF3677	0.80	+0.9
3,721,429	+		GFF3677	0.80	-1.5
3,721,429	+		GFF3677	0.80	-0.8
3,721,429	+		GFF3677	0.80	+0.3
3,721,429	+		GFF3677	0.80	-0.3
3,721,429	+		GFF3677	0.80	-1.3
3,721,429	+		GFF3677	0.80	+0.5
3,721,437	-		GFF3677	0.81	+0.5
3,721,437	-		GFF3677	0.81	-2.5
3,721,437	-		GFF3677	0.81	-0.1
3,721,437	-		GFF3677	0.81	-0.7
3,721,457	-		GFF3677	0.82	-0.6
3,721,461	-		GFF3677	0.82	+0.2
3,721,463	+		GFF3677	0.82	-0.3
3,721,463	+		GFF3677	0.82	+0.0
3,721,500	+		GFF3677	0.83	-1.2
3,721,502	-		GFF3677	0.84	+1.2
3,721,503	-		GFF3677	0.84	-1.5
3,721,508	-		GFF3677	0.84	-0.4
3,721,513	-		GFF3677	0.84	-0.6
3,721,528	-		GFF3677	0.85	+0.1
3,721,543	+		GFF3677	0.85	-1.8
3,721,543	+		GFF3677	0.85	-0.6
3,721,551	-		GFF3677	0.86	-0.0
3,721,612	+		GFF3677	0.88	-0.2
3,721,612	+		GFF3677	0.88	-1.4
3,721,614	-		GFF3677	0.88	-1.1
3,721,618	+		GFF3677	0.88	-1.5
3,721,618	+		GFF3677	0.88	-0.6
3,721,628	+		GFF3677	0.89	-2.4
3,721,634	+		GFF3677	0.89	-0.1
3,721,634	+		GFF3677	0.89	-0.4
3,721,634	+		GFF3677	0.89	-0.6
3,721,634	+		GFF3677	0.89	+0.8
3,721,634	+		GFF3677	0.89	-1.0
3,721,636	-		GFF3677	0.89	+0.4
3,721,642	-		GFF3677	0.89	-1.2
3,721,642	-		GFF3677	0.89	-0.6
3,721,642	-		GFF3677	0.89	+0.5
3,721,642	-		GFF3677	0.89	-1.3
3,721,642	-		GFF3677	0.89	+1.9
3,721,642	-		GFF3677	0.89	-1.5
3,721,642	-		GFF3677	0.89	-0.5
3,721,642	-		GFF3677	0.89	-3.2
3,721,642	-		GFF3677	0.89	+0.4
3,721,649	+		GFF3677	0.90	-0.9
3,721,653	+		GFF3677	0.90	+0.1
3,721,654	+		GFF3677	0.90	-0.6
3,721,664	+				-1.2
3,721,668	+				-2.5
3,721,672	-				-1.2
3,721,679	+				+1.1
3,721,698	+				-0.2
3,721,703	+				+0.1
3,721,703	+				+1.1
3,721,703	+				-1.4
3,721,711	-				+0.0
3,721,734	-				+0.2
3,721,734	-				-0.1
3,721,785	+				-0.5
3,721,816	-				+0.7
3,721,828	-				-0.3
3,721,859	-				-1.3
3,721,874	-				+1.0
3,721,882	-				+1.4
3,721,889	-				+0.2
3,721,897	+				+0.3
3,721,897	+				+1.4
3,721,905	-				-1.8
3,721,971	-				+0.6
3,721,978	-				-0.4
3,721,978	-				-3.0
3,721,995	+				-0.8
3,721,995	+				+1.0
3,721,998	+				-0.4
3,721,998	+				-0.9
3,721,998	+				-0.6
3,722,003	-				+0.9
3,722,006	-				+0.4
3,722,006	-				+0.0
3,722,007	-				-0.6
3,722,007	-				-0.9
3,722,007	-				-0.4
3,722,055	-				-0.6
3,722,110	-				+0.2
3,722,120	-				-0.0
3,722,134	-				+1.2
3,722,137	+				+0.4
3,722,142	+				-0.2
3,722,142	+				-0.2
3,722,142	+				-0.2
3,722,142	+				-0.4
3,722,142	+				+1.2
3,722,142	+				+0.4
3,722,142	+				-0.6
3,722,142	+				-0.1
3,722,142	+				-0.1
3,722,142	+				-1.2
3,722,142	+				-0.0
3,722,142	+				-1.6
3,722,142	+				+1.3
3,722,150	-		GFF3678	0.11	-0.6
3,722,150	-		GFF3678	0.11	-1.3
3,722,150	-		GFF3678	0.11	+0.5
3,722,150	-		GFF3678	0.11	+1.0
3,722,150	-		GFF3678	0.11	+0.4
3,722,150	-		GFF3678	0.11	-0.8
3,722,150	-		GFF3678	0.11	-1.3
3,722,150	-		GFF3678	0.11	-2.5
3,722,150	-		GFF3678	0.11	-0.8
3,722,150	-		GFF3678	0.11	+0.2
3,722,150	-		GFF3678	0.11	+0.5
3,722,150	-		GFF3678	0.11	-2.6
3,722,150	-		GFF3678	0.11	-1.8
3,722,150	-		GFF3678	0.11	+0.5
3,722,150	-		GFF3678	0.11	-0.6
3,722,158	+		GFF3678	0.14	-0.8
3,722,166	-		GFF3678	0.16	-0.2
3,722,166	-		GFF3678	0.16	+0.5
3,722,178	-		GFF3678	0.20	+0.4
3,722,196	+		GFF3678	0.26	-1.4
3,722,204	-		GFF3678	0.28	+1.4
3,722,208	-		GFF3678	0.29	+0.5
3,722,237	+		GFF3678	0.38	-0.9
3,722,245	-		GFF3678	0.41	-0.2
3,722,274	+		GFF3678	0.50	-1.0
3,722,277	-		GFF3678	0.51	+0.2
3,722,284	+		GFF3678	0.53	-1.8
3,722,287	+		GFF3678	0.54	+1.0
3,722,287	+		GFF3678	0.54	+0.0
3,722,287	+		GFF3678	0.54	+0.8
3,722,287	-		GFF3678	0.54	-0.7
3,722,289	+		GFF3678	0.55	+0.8
3,722,289	+		GFF3678	0.55	-1.6
3,722,295	+		GFF3678	0.56	-1.4
3,722,295	-		GFF3678	0.56	-1.3
3,722,295	-		GFF3678	0.56	-0.4
3,722,295	-		GFF3678	0.56	+0.4
3,722,305	+		GFF3678	0.60	-0.3
3,722,320	-		GFF3678	0.64	+1.0
3,722,366	+		GFF3678	0.79	-0.8
3,722,366	+		GFF3678	0.79	-0.2
3,722,366	+		GFF3678	0.79	+0.5
3,722,374	-		GFF3678	0.81	-2.1
3,722,375	-		GFF3678	0.81	+1.4
3,722,396	+		GFF3678	0.88	-2.5
3,722,396	+		GFF3678	0.88	+0.1
3,722,404	+				-0.4
3,722,431	-				-0.7
3,722,436	+				+0.9
3,722,449	+				-0.7
3,722,473	+				+0.5
3,722,493	+				+0.7
3,722,508	-				+1.1
3,722,529	+				-2.2
3,722,529	+				-0.5
3,722,555	-				-1.8
3,722,629	+		GFF3679	0.11	+1.4
3,722,639	+		GFF3679	0.12	-0.4
3,722,649	+		GFF3679	0.13	+1.4
3,722,657	+		GFF3679	0.13	-0.1
3,722,665	+		GFF3679	0.14	-1.0
3,722,665	+		GFF3679	0.14	+1.2
3,722,665	-		GFF3679	0.14	-1.4
3,722,668	-		GFF3679	0.14	+0.2
3,722,753	+		GFF3679	0.20	+0.7
3,722,790	-		GFF3679	0.22	+0.0
3,722,792	+		GFF3679	0.22	-0.6
3,722,792	+		GFF3679	0.22	+0.5
3,722,792	+		GFF3679	0.22	-0.3
3,722,792	+		GFF3679	0.22	+0.5
3,722,792	+		GFF3679	0.22	-1.3
3,722,794	+		GFF3679	0.23	-1.7
3,722,795	-		GFF3679	0.23	+0.5
3,722,795	-		GFF3679	0.23	-0.7
3,722,800	-		GFF3679	0.23	-1.0
3,722,800	-		GFF3679	0.23	-0.7
3,722,802	-		GFF3679	0.23	+1.0
3,722,802	-		GFF3679	0.23	+1.2
3,722,809	+		GFF3679	0.24	+1.2
3,722,809	+		GFF3679	0.24	-0.1
3,722,809	+		GFF3679	0.24	+0.2
3,722,809	+		GFF3679	0.24	+0.3
3,722,816	+		GFF3679	0.24	-1.6
3,722,817	-		GFF3679	0.24	+0.4
3,722,819	-		GFF3679	0.24	+0.5
3,722,821	+		GFF3679	0.24	-1.4
3,722,842	+		GFF3679	0.26	+0.7
3,722,842	+		GFF3679	0.26	+0.3
3,722,842	+		GFF3679	0.26	-0.5
3,722,842	+		GFF3679	0.26	-1.3
3,722,842	+		GFF3679	0.26	-1.5
3,722,842	+		GFF3679	0.26	-0.3
3,722,842	+		GFF3679	0.26	-0.8
3,722,842	+		GFF3679	0.26	-0.1
3,722,842	+		GFF3679	0.26	-1.0
3,722,842	+		GFF3679	0.26	+0.6
3,722,842	+		GFF3679	0.26	+0.4
3,722,842	+		GFF3679	0.26	-0.2
3,722,842	+		GFF3679	0.26	-0.6
3,722,842	+		GFF3679	0.26	-0.8
3,722,848	-		GFF3679	0.26	+0.6
3,722,850	-		GFF3679	0.27	-0.3
3,722,850	-		GFF3679	0.27	-0.6
3,722,850	-		GFF3679	0.27	+0.6
3,722,850	-		GFF3679	0.27	+0.7
3,722,850	-		GFF3679	0.27	+0.2
3,722,850	-		GFF3679	0.27	-0.6
3,722,850	-		GFF3679	0.27	-0.5
3,722,850	-		GFF3679	0.27	-1.0
3,722,850	-		GFF3679	0.27	+0.6
3,722,850	-		GFF3679	0.27	-1.7
3,722,850	-		GFF3679	0.27	-1.6
3,722,850	-		GFF3679	0.27	-0.1
3,722,850	-		GFF3679	0.27	-2.0
3,722,850	-		GFF3679	0.27	+0.4
3,722,850	-		GFF3679	0.27	-1.9
3,722,850	-		GFF3679	0.27	-1.0
3,722,850	-		GFF3679	0.27	-0.1
3,722,850	-		GFF3679	0.27	-2.0
3,722,850	-		GFF3679	0.27	-1.2
3,722,850	-		GFF3679	0.27	-0.6
3,722,850	-		GFF3679	0.27	+1.4
3,722,853	+		GFF3679	0.27	-0.3
3,722,855	-		GFF3679	0.27	+0.4
3,722,861	-		GFF3679	0.27	+0.6
3,722,871	-		GFF3679	0.28	-1.5
3,722,897	+		GFF3679	0.30	+1.2
3,722,897	+		GFF3679	0.30	-0.8
3,722,897	+		GFF3679	0.30	-2.0
3,722,905	-		GFF3679	0.30	-0.7
3,722,906	-		GFF3679	0.30	-1.5
3,722,951	+		GFF3679	0.33	+0.4
3,722,957	-		GFF3679	0.34	-0.5
3,722,959	-		GFF3679	0.34	-0.1
3,722,960	-		GFF3679	0.34	-1.9
3,722,970	+		GFF3679	0.35	+0.5
3,722,978	-		GFF3679	0.35	+0.7
3,722,983	-		GFF3679	0.36	-0.6
3,722,985	-		GFF3679	0.36	-1.7
3,723,004	+		GFF3679	0.37	+0.4
3,723,004	+		GFF3679	0.37	-0.6
3,723,004	+		GFF3679	0.37	-0.2
3,723,004	+		GFF3679	0.37	-0.3
3,723,012	-		GFF3679	0.38	-1.1
3,723,012	-		GFF3679	0.38	-0.3
3,723,012	-		GFF3679	0.38	+0.2
3,723,023	+		GFF3679	0.38	+0.9
3,723,032	-		GFF3679	0.39	-0.5
3,723,050	-		GFF3679	0.40	+0.9
3,723,074	-		GFF3679	0.42	+0.9
3,723,085	+		GFF3679	0.43	+0.6
3,723,093	-		GFF3679	0.43	-0.0
3,723,093	-		GFF3679	0.43	-0.0
3,723,099	-		GFF3679	0.44	+1.7
3,723,105	+		GFF3679	0.44	-1.5
3,723,123	+		GFF3679	0.45	-0.8
3,723,125	+		GFF3679	0.45	-0.3
3,723,125	+		GFF3679	0.45	-1.4
3,723,125	+		GFF3679	0.45	-1.9
3,723,125	+		GFF3679	0.45	+0.2
3,723,125	+		GFF3679	0.45	+0.2
3,723,133	-		GFF3679	0.46	-0.6
3,723,133	-		GFF3679	0.46	+0.4
3,723,133	-		GFF3679	0.46	-1.9
3,723,133	-		GFF3679	0.46	-0.2
3,723,134	+		GFF3679	0.46	+0.1
3,723,135	+		GFF3679	0.46	-2.0
3,723,135	+		GFF3679	0.46	-2.5
3,723,135	+		GFF3679	0.46	-1.5
3,723,143	-		GFF3679	0.47	+1.7
3,723,202	+		GFF3679	0.51	-0.5
3,723,212	+		GFF3679	0.51	-2.4
3,723,217	+		GFF3679	0.52	-2.3
3,723,225	-		GFF3679	0.52	+1.0
3,723,227	+		GFF3679	0.53	-0.4
3,723,235	-		GFF3679	0.53	-0.8
3,723,238	+		GFF3679	0.53	-2.7
3,723,238	+		GFF3679	0.53	+0.3
3,723,238	+		GFF3679	0.53	-0.9
3,723,246	-		GFF3679	0.54	+0.1
3,723,246	-		GFF3679	0.54	-1.8
3,723,246	-		GFF3679	0.54	-1.1
3,723,246	-		GFF3679	0.54	+0.1
3,723,246	-		GFF3679	0.54	-0.5
3,723,246	-		GFF3679	0.54	-0.3
3,723,246	-		GFF3679	0.54	-0.4
3,723,246	-		GFF3679	0.54	-0.9
3,723,246	-		GFF3679	0.54	+0.4
3,723,246	-		GFF3679	0.54	-0.9
3,723,246	-		GFF3679	0.54	-1.5
3,723,264	+		GFF3679	0.55	-0.7
3,723,283	+		GFF3679	0.56	-0.9
3,723,291	-		GFF3679	0.57	+1.2
3,723,306	+		GFF3679	0.58	-1.1
3,723,306	+		GFF3679	0.58	-0.6
3,723,319	+		GFF3679	0.59	-0.6
3,723,346	-		GFF3679	0.61	-0.4
3,723,356	-		GFF3679	0.61	-2.1
3,723,382	+		GFF3679	0.63	-0.7
3,723,392	+		GFF3679	0.64	-2.0
3,723,402	+		GFF3679	0.65	+0.2
3,723,409	-		GFF3679	0.65	-2.0
3,723,410	-		GFF3679	0.65	-0.3
3,723,426	-		GFF3679	0.66	+0.2
3,723,429	+		GFF3679	0.66	+0.8
3,723,431	-		GFF3679	0.67	-2.9