Strain Fitness in Sphingobium sp. HT1-2 around GFF3638

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,684,964	+		GFF3636	0.24	+0.1
3,684,964	+		GFF3636	0.24	+0.8
3,684,972	-		GFF3636	0.25	+0.6
3,684,985	+		GFF3636	0.26	+0.9
3,684,985	+		GFF3636	0.26	-0.6
3,684,993	-		GFF3636	0.27	+0.8
3,684,993	-		GFF3636	0.27	-0.9
3,684,993	-		GFF3636	0.27	+0.3
3,684,993	-		GFF3636	0.27	-0.2
3,684,993	-		GFF3636	0.27	-1.2
3,684,993	-		GFF3636	0.27	-1.1
3,684,994	+		GFF3636	0.27	-0.2
3,685,002	-		GFF3636	0.28	-1.0
3,685,002	-		GFF3636	0.28	-0.4
3,685,048	-		GFF3636	0.32	-0.8
3,685,095	+		GFF3636	0.37	+0.8
3,685,103	-		GFF3636	0.38	-0.7
3,685,129	-		GFF3636	0.41	-0.8
3,685,153	+		GFF3636	0.43	-0.6
3,685,153	+		GFF3636	0.43	-1.9
3,685,153	+		GFF3636	0.43	+0.1
3,685,153	+		GFF3636	0.43	-1.4
3,685,161	-		GFF3636	0.44	-0.0
3,685,161	-		GFF3636	0.44	-0.5
3,685,161	-		GFF3636	0.44	-1.1
3,685,161	-		GFF3636	0.44	-0.8
3,685,179	+		GFF3636	0.46	+0.2
3,685,234	-		GFF3636	0.51	+1.9
3,685,235	-		GFF3636	0.51	-0.1
3,685,235	-		GFF3636	0.51	+0.8
3,685,243	+		GFF3636	0.52	+0.4
3,685,243	+		GFF3636	0.52	-1.1
3,685,243	+		GFF3636	0.52	+0.0
3,685,246	-		GFF3636	0.53	-1.6
3,685,248	+		GFF3636	0.53	+0.2
3,685,251	-		GFF3636	0.53	-0.2
3,685,251	-		GFF3636	0.53	-0.5
3,685,251	-		GFF3636	0.53	+0.6
3,685,251	-		GFF3636	0.53	+1.2
3,685,251	-		GFF3636	0.53	+0.9
3,685,304	+		GFF3636	0.59	+0.8
3,685,308	-		GFF3636	0.59	-0.5
3,685,313	+		GFF3636	0.59	-0.0
3,685,313	+		GFF3636	0.59	-0.0
3,685,319	+		GFF3636	0.60	-1.4
3,685,327	-		GFF3636	0.61	-0.6
3,685,327	-		GFF3636	0.61	+1.3
3,685,327	-		GFF3636	0.61	+0.6
3,685,327	-		GFF3636	0.61	+1.1
3,685,327	-		GFF3636	0.61	-1.4
3,685,327	-		GFF3636	0.61	-0.9
3,685,344	+		GFF3636	0.63	+0.2
3,685,352	-		GFF3636	0.63	+0.3
3,685,414	+		GFF3636	0.70	+0.8
3,685,414	+		GFF3636	0.70	-1.4
3,685,422	-		GFF3636	0.71	-0.9
3,685,422	-		GFF3636	0.71	+0.0
3,685,449	-		GFF3636	0.73	-2.2
3,685,479	-		GFF3636	0.77	-1.4
3,685,499	+		GFF3636	0.79	+0.2
3,685,504	+		GFF3636	0.79	-1.0
3,685,504	+		GFF3636	0.79	+1.0
3,685,507	-		GFF3636	0.79	-1.9
3,685,514	+		GFF3636	0.80	+1.0
3,685,514	+		GFF3636	0.80	-0.6
3,685,522	-		GFF3636	0.81	-1.3
3,685,522	-		GFF3636	0.81	-1.4
3,685,544	-		GFF3636	0.83	+0.6
3,685,558	-		GFF3636	0.85	-0.2
3,685,565	+		GFF3636	0.85	-0.7
3,685,565	+		GFF3636	0.85	-1.6
3,685,565	+		GFF3636	0.85	+1.0
3,685,565	+		GFF3636	0.85	-2.5
3,685,565	+		GFF3636	0.85	+0.7
3,685,565	+		GFF3636	0.85	-0.7
3,685,565	+		GFF3636	0.85	+1.3
3,685,565	+		GFF3636	0.85	-0.5
3,685,573	-		GFF3636	0.86	+0.0
3,685,573	-		GFF3636	0.86	-0.2
3,685,573	-		GFF3636	0.86	+0.2
3,685,573	-		GFF3636	0.86	-1.1
3,685,599	+		GFF3636	0.89	+0.4
3,685,620	+				+0.1
3,685,628	-				-0.4
3,685,638	-				+2.0
3,685,638	-				+0.6
3,685,638	-				-1.2
3,685,643	+				+0.1
3,685,657	+				+0.0
3,685,667	-				-0.0
3,685,667	-				-0.1
3,685,669	+				+0.6
3,685,672	-				+0.3
3,685,674	+				-0.9
3,685,674	+				+1.2
3,685,674	+				-0.3
3,685,674	+				-0.8
3,685,674	+				+0.5
3,685,679	+				-1.0
3,685,682	-				-1.4
3,685,682	-				+0.2
3,685,682	-				+0.4
3,685,689	-				+1.2
3,685,694	+				-0.3
3,685,724	-		GFF3637	0.10	+0.6
3,685,726	+		GFF3637	0.12	-1.4
3,685,726	+		GFF3637	0.12	-1.0
3,685,726	+		GFF3637	0.12	-0.2
3,685,726	+		GFF3637	0.12	-0.3
3,685,726	+		GFF3637	0.12	+0.3
3,685,726	+		GFF3637	0.12	+0.7
3,685,726	+		GFF3637	0.12	-1.3
3,685,734	-		GFF3637	0.17	+0.6
3,685,751	-		GFF3637	0.29	+1.2
3,685,761	+		GFF3637	0.36	-0.2
3,685,765	+		GFF3637	0.39	+1.0
3,685,765	+		GFF3637	0.39	-0.9
3,685,765	+		GFF3637	0.39	-0.3
3,685,769	-		GFF3637	0.42	-1.2
3,685,769	-		GFF3637	0.42	-0.7
3,685,773	-		GFF3637	0.44	-0.2
3,685,779	-		GFF3637	0.49	+0.1
3,685,806	+		GFF3637	0.67	+0.2
3,685,806	+		GFF3637	0.67	-2.6
3,685,806	+		GFF3637	0.67	-0.2
3,685,811	+		GFF3637	0.71	+0.4
3,685,814	-		GFF3637	0.73	-1.7
3,685,814	-		GFF3637	0.73	-0.7
3,685,814	-		GFF3637	0.73	-0.4
3,685,814	-		GFF3637	0.73	+0.2
3,685,816	+		GFF3637	0.74	+0.0
3,685,816	+		GFF3637	0.74	+0.0
3,685,816	+		GFF3637	0.74	-0.9
3,685,819	-		GFF3637	0.76	-0.7
3,685,821	+		GFF3637	0.78	-0.9
3,685,824	-		GFF3637	0.80	-1.7
3,685,824	-		GFF3637	0.80	-2.1
3,685,824	-		GFF3637	0.80	+0.1
3,685,824	-		GFF3637	0.80	+1.2
3,685,824	-		GFF3637	0.80	-2.2
3,685,829	-		GFF3637	0.83	-0.7
3,685,838	-				+0.7
3,685,838	-				+0.7
3,685,862	-				-0.7
3,685,870	-				-0.6
3,685,870	-				-0.8
3,685,870	-				+0.4
3,685,870	-				-0.9
3,685,920	+				-0.4
3,685,945	+				-0.6
3,685,945	+				-0.4
3,685,945	+				-1.1
3,685,945	+				-0.7
3,685,953	-				-0.5
3,685,953	-				+0.5
3,685,953	-				+0.2
3,685,953	-				-0.5
3,685,953	-				-0.5
3,685,953	-				+0.4
3,685,955	+				-0.7
3,685,960	+				-0.6
3,685,960	+				-1.7
3,685,960	+				-0.5
3,685,963	-				+0.5
3,685,963	-				-1.2
3,685,965	+		GFF3638	0.11	-1.7
3,685,968	-		GFF3638	0.13	-0.9
3,685,968	-		GFF3638	0.13	+0.8
3,685,968	-		GFF3638	0.13	+0.4
3,685,968	-		GFF3638	0.13	-0.2
3,685,968	-		GFF3638	0.13	+1.3
3,685,968	-		GFF3638	0.13	-0.4
3,685,970	+		GFF3638	0.14	-2.0
3,685,971	-		GFF3638	0.15	-0.1
3,685,977	+		GFF3638	0.19	-1.2
3,685,977	+		GFF3638	0.19	-0.7
3,685,977	+		GFF3638	0.19	+0.8
3,685,977	+		GFF3638	0.19	-1.8
3,685,982	+		GFF3638	0.22	-0.2
3,685,985	-		GFF3638	0.24	-0.2
3,685,985	-		GFF3638	0.24	+0.4
3,685,985	-		GFF3638	0.24	-0.8
3,685,990	+		GFF3638	0.27	-0.5
3,686,000	-		GFF3638	0.34	-1.9
3,686,001	+		GFF3638	0.35	+0.2
3,686,004	-		GFF3638	0.37	-0.9
3,686,011	+		GFF3638	0.41	-0.6
3,686,046	-		GFF3638	0.64	+0.7
3,686,054	+		GFF3638	0.69	-0.5
3,686,054	+		GFF3638	0.69	+0.9
3,686,071	-		GFF3638	0.80	-0.5
3,686,072	+		GFF3638	0.81	-0.2
3,686,073	+		GFF3638	0.82	-0.3
3,686,075	-		GFF3638	0.83	+0.2
3,686,075	-		GFF3638	0.83	+0.5
3,686,075	-		GFF3638	0.83	+1.8
3,686,091	+				-1.6
3,686,104	-				+0.1
3,686,109	-				-0.3
3,686,111	+				-0.4
3,686,111	+				-0.9
3,686,115	-				+0.8
3,686,121	+				+0.2
3,686,132	+				-0.3
3,686,132	+				+0.3
3,686,140	-				+0.5
3,686,140	-				+0.7
3,686,150	-				-0.6
3,686,156	-				+0.6
3,686,156	-				-1.8
3,686,409	+				-1.4
3,686,409	+				-1.5
3,686,409	+				-0.5
3,686,409	+				+0.1
3,686,411	+				-1.5
3,686,411	+				-1.2
3,686,450	-				-0.4
3,686,460	+				-2.4
3,686,486	+				-1.4
3,686,486	+				-1.4
3,686,494	-				+0.3
3,686,494	-				-0.3
3,686,494	-				-0.7
3,686,516	-				-1.1
3,686,530	+				+0.6
3,686,541	+				-0.8
3,686,562	+				-1.1
3,686,586	-				-2.2
3,686,596	+				+0.1
3,686,602	+				+0.4
3,686,612	+				+0.1
3,686,612	+				-1.7
3,686,614	-				-0.5
3,686,614	-				-0.5
3,686,629	-				+1.5
3,686,659	-				+0.0
3,686,659	-				-1.7
3,686,660	-				-0.8
3,686,677	-				-1.9
3,686,687	-				-0.1
3,686,694	+				-1.4
3,686,702	-				-0.0
3,686,717	-				+0.6
3,686,740	-				+0.1
3,686,741	-				-0.5
3,686,741	-				-0.6
3,686,742	-				-0.1
3,686,744	-				-1.3
3,686,752	-				-0.8
3,686,753	+				-0.2
3,686,754	+				+1.1
3,686,787	+				-0.6
3,686,787	+				-0.8
3,686,787	+				+0.3
3,686,787	+				-0.7
3,686,793	-				-0.6
3,686,795	-				-1.0
3,686,807	-				-1.6
3,686,829	-				-0.6
3,686,835	+				-0.2
3,686,856	+				-0.3
3,686,856	+				-1.3
3,686,856	+				+0.1
3,686,856	+				+0.0
3,686,856	+				-0.4
3,686,858	+				-1.4
3,686,864	+				+1.1
3,686,864	-				-1.7
3,686,864	-				-1.3
3,686,864	-				+0.8
3,686,864	-				-0.7
3,686,864	-				-0.3
3,686,864	-				-0.2
3,686,864	-				+0.1
3,686,864	-				-0.5
3,686,864	-				-0.7
3,686,864	-				+0.2
3,686,864	-				+0.9
3,686,864	-				+0.8
3,686,864	-				-0.4
3,686,864	-				-0.0
3,686,866	+				+1.0
3,686,866	+				+1.0
3,686,912	+		GFF3640	0.21	-1.6
3,686,920	-		GFF3640	0.23	-0.9
3,686,920	-		GFF3640	0.23	+0.3
3,686,958	+		GFF3640	0.33	-0.8
3,686,958	+		GFF3640	0.33	-0.2
3,686,958	+		GFF3640	0.33	-0.0
3,686,958	+		GFF3640	0.33	+1.6
3,686,958	+		GFF3640	0.33	+0.5
3,686,958	+		GFF3640	0.33	+1.2
3,686,958	+		GFF3640	0.33	-0.4
3,686,958	+		GFF3640	0.33	-0.7
3,686,958	+		GFF3640	0.33	+0.2
3,686,958	+		GFF3640	0.33	-0.1
3,686,958	+		GFF3640	0.33	-0.7
3,686,958	+		GFF3640	0.33	+0.5
3,686,958	+		GFF3640	0.33	+0.1
3,686,958	+		GFF3640	0.33	-1.4
3,686,959	+		GFF3640	0.33	+0.8
3,686,966	-		GFF3640	0.35	-0.2
3,686,966	-		GFF3640	0.35	+0.6
3,686,966	-		GFF3640	0.35	-1.4
3,686,966	-		GFF3640	0.35	-0.7
3,686,966	-		GFF3640	0.35	-2.2
3,686,966	-		GFF3640	0.35	-0.2
3,686,966	-		GFF3640	0.35	-1.8
3,686,966	-		GFF3640	0.35	+0.2
3,686,966	-		GFF3640	0.35	-1.0
3,686,966	-		GFF3640	0.35	-2.3
3,686,966	-		GFF3640	0.35	-1.5
3,686,966	-		GFF3640	0.35	-0.7
3,686,966	-		GFF3640	0.35	-1.2
3,686,966	-		GFF3640	0.35	-1.1
3,686,996	+		GFF3640	0.42	+0.4
3,686,996	+		GFF3640	0.42	-0.1
3,686,996	+		GFF3640	0.42	-0.6
3,686,999	-		GFF3640	0.43	-2.1
3,687,001	+		GFF3640	0.44	-0.6
3,687,001	+		GFF3640	0.44	-0.7
3,687,004	-		GFF3640	0.44	-0.3
3,687,004	-		GFF3640	0.44	+0.2
3,687,004	-		GFF3640	0.44	+0.4
3,687,009	-		GFF3640	0.46	-1.8
3,687,009	-		GFF3640	0.46	-1.9
3,687,015	+		GFF3640	0.47	+0.6
3,687,024	-		GFF3640	0.49	-2.5
3,687,030	+		GFF3640	0.51	+0.3
3,687,030	+		GFF3640	0.51	+0.6
3,687,036	+		GFF3640	0.53	-0.9
3,687,036	+		GFF3640	0.53	+0.5
3,687,036	+		GFF3640	0.53	-0.4
3,687,036	+		GFF3640	0.53	-1.4
3,687,036	+		GFF3640	0.53	-0.2
3,687,036	+		GFF3640	0.53	-0.5
3,687,038	+		GFF3640	0.53	-0.3
3,687,038	-		GFF3640	0.53	+0.1
3,687,038	-		GFF3640	0.53	+0.4
3,687,038	-		GFF3640	0.53	-0.1
3,687,039	-		GFF3640	0.53	-1.1
3,687,044	-		GFF3640	0.55	-1.3
3,687,044	-		GFF3640	0.55	-1.7
3,687,044	-		GFF3640	0.55	-1.3
3,687,044	-		GFF3640	0.55	-0.8
3,687,046	+		GFF3640	0.55	-1.2
3,687,046	+		GFF3640	0.55	+0.2
3,687,046	+		GFF3640	0.55	-1.4
3,687,046	+		GFF3640	0.55	-1.4
3,687,054	-		GFF3640	0.57	-1.8
3,687,054	-		GFF3640	0.57	-0.6
3,687,054	-		GFF3640	0.57	-2.0
3,687,054	-		GFF3640	0.57	-1.4
3,687,072	+		GFF3640	0.62	+0.4
3,687,077	+		GFF3640	0.63	-0.6
3,687,078	+		GFF3640	0.63	+0.4
3,687,080	-		GFF3640	0.64	-0.6
3,687,085	-		GFF3640	0.65	-1.8
3,687,089	-		GFF3640	0.66	-1.8
3,687,099	+		GFF3640	0.68	+0.1
3,687,099	+		GFF3640	0.68	+1.3