Strain Fitness in Sphingobium sp. HT1-2 around GFF3621

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,667,069	+		GFF3619	0.31	+0.2
3,667,072	-		GFF3619	0.32	-0.1
3,667,074	+		GFF3619	0.33	-0.8
3,667,102	+		GFF3619	0.42	-0.4
3,667,110	-		GFF3619	0.45	+0.2
3,667,133	+		GFF3619	0.53	-0.5
3,667,134	+		GFF3619	0.53	+1.5
3,667,134	+		GFF3619	0.53	-0.0
3,667,134	+		GFF3619	0.53	-2.1
3,667,134	+		GFF3619	0.53	+0.6
3,667,139	+		GFF3619	0.55	+0.1
3,667,140	+		GFF3619	0.55	+0.0
3,667,141	-		GFF3619	0.55	-0.1
3,667,142	-		GFF3619	0.56	-1.9
3,667,142	-		GFF3619	0.56	+1.1
3,667,142	-		GFF3619	0.56	-0.5
3,667,142	-		GFF3619	0.56	-1.2
3,667,157	-		GFF3619	0.61	-1.7
3,667,180	+		GFF3619	0.68	-0.2
3,667,197	+		GFF3619	0.74	-2.2
3,667,197	+		GFF3619	0.74	+0.7
3,667,197	+		GFF3619	0.74	-0.6
3,667,197	+		GFF3619	0.74	-0.8
3,667,197	+		GFF3619	0.74	-0.8
3,667,197	+		GFF3619	0.74	-0.4
3,667,197	+		GFF3619	0.74	-0.4
3,667,197	+		GFF3619	0.74	-0.7
3,667,197	+		GFF3619	0.74	-0.5
3,667,197	+		GFF3619	0.74	+1.0
3,667,197	+		GFF3619	0.74	-0.2
3,667,197	+		GFF3619	0.74	-1.9
3,667,197	+		GFF3619	0.74	+0.0
3,667,197	+		GFF3619	0.74	+0.0
3,667,197	+		GFF3619	0.74	+0.5
3,667,197	+		GFF3619	0.74	-0.1
3,667,197	+		GFF3619	0.74	-0.7
3,667,197	+		GFF3619	0.74	-1.4
3,667,197	+		GFF3619	0.74	-0.4
3,667,197	+		GFF3619	0.74	-1.6
3,667,197	+		GFF3619	0.74	-1.8
3,667,205	-		GFF3619	0.77	-0.3
3,667,205	-		GFF3619	0.77	-0.4
3,667,205	-		GFF3619	0.77	+0.1
3,667,205	-		GFF3619	0.77	+0.6
3,667,205	-		GFF3619	0.77	+0.2
3,667,205	-		GFF3619	0.77	-0.7
3,667,205	-		GFF3619	0.77	+0.2
3,667,205	-		GFF3619	0.77	+0.7
3,667,205	-		GFF3619	0.77	+0.6
3,667,205	-		GFF3619	0.77	+0.4
3,667,205	-		GFF3619	0.77	+0.3
3,667,205	-		GFF3619	0.77	-0.2
3,667,205	-		GFF3619	0.77	-1.5
3,667,205	-		GFF3619	0.77	+0.9
3,667,205	-		GFF3619	0.77	+0.1
3,667,205	-		GFF3619	0.77	+0.5
3,667,205	-		GFF3619	0.77	+0.2
3,667,205	-		GFF3619	0.77	+1.6
3,667,205	-		GFF3619	0.77	+0.5
3,667,205	-		GFF3619	0.77	-1.0
3,667,205	-		GFF3619	0.77	-1.6
3,667,205	-		GFF3619	0.77	+0.1
3,667,205	-		GFF3619	0.77	+0.2
3,667,205	-		GFF3619	0.77	+0.1
3,667,207	+		GFF3619	0.77	-1.0
3,667,207	+		GFF3619	0.77	-1.2
3,667,215	-		GFF3619	0.80	+0.1
3,667,215	-		GFF3619	0.80	-0.1
3,667,234	-		GFF3619	0.87	-1.3
3,667,245	+				-1.1
3,667,245	+				-0.9
3,667,245	+				+1.6
3,667,245	+				-1.5
3,667,245	+				-1.0
3,667,245	+				-1.0
3,667,245	+				+0.4
3,667,245	+				-0.9
3,667,245	+				+0.1
3,667,245	+				+1.2
3,667,245	+				+0.6
3,667,245	+				-1.2
3,667,245	+				+0.8
3,667,245	+				+0.9
3,667,247	+				+0.6
3,667,250	-				-0.1
3,667,253	-				-0.2
3,667,253	-				-0.0
3,667,253	-				+0.6
3,667,253	-				-2.6
3,667,253	-				+0.4
3,667,253	-				+0.2
3,667,253	-				+0.3
3,667,253	-				+0.4
3,667,253	-				-0.7
3,667,253	-				-0.3
3,667,253	-				-2.4
3,667,253	-				-1.2
3,667,253	-				-0.4
3,667,253	-				-0.8
3,667,253	-				-0.2
3,667,253	-				+0.7
3,667,253	-				-0.2
3,667,253	-				-1.8
3,667,253	-				-2.1
3,667,253	-				-0.6
3,667,253	-				+2.0
3,667,253	-				-0.5
3,667,253	-				+0.6
3,667,253	-				-0.5
3,667,253	-				-1.2
3,667,272	+				-0.4
3,667,272	+				-1.5
3,667,288	+				-0.6
3,667,295	+				+0.1
3,667,295	+				+0.9
3,667,296	-				+2.0
3,667,311	-				-0.2
3,667,321	+				-0.4
3,667,321	+				-0.3
3,667,329	-				-0.1
3,667,337	-				+0.3
3,667,337	-				+0.4
3,667,337	-				-1.6
3,667,338	+				+0.1
3,667,338	+				+0.5
3,667,338	+				+0.4
3,667,346	-				-1.2
3,667,346	-				-0.8
3,667,346	-				+0.9
3,667,353	-		GFF3620	0.10	+1.2
3,667,361	-		GFF3620	0.11	-0.6
3,667,369	-		GFF3620	0.12	-0.8
3,667,406	+		GFF3620	0.17	+0.9
3,667,406	+		GFF3620	0.17	+0.1
3,667,406	+		GFF3620	0.17	+0.4
3,667,406	+		GFF3620	0.17	-0.6
3,667,453	+		GFF3620	0.23	+0.4
3,667,458	+		GFF3620	0.24	+0.7
3,667,458	+		GFF3620	0.24	-1.3
3,667,458	+		GFF3620	0.24	-0.7
3,667,466	-		GFF3620	0.25	-0.5
3,667,466	-		GFF3620	0.25	+1.3
3,667,466	-		GFF3620	0.25	-0.7
3,667,466	-		GFF3620	0.25	-0.7
3,667,466	-		GFF3620	0.25	-1.2
3,667,468	-		GFF3620	0.25	-0.6
3,667,548	+		GFF3620	0.36	+0.5
3,667,551	-		GFF3620	0.36	-1.1
3,667,551	-		GFF3620	0.36	+0.7
3,667,553	+		GFF3620	0.36	-0.6
3,667,553	+		GFF3620	0.36	-2.5
3,667,553	+		GFF3620	0.36	-0.3
3,667,553	+		GFF3620	0.36	+0.1
3,667,553	+		GFF3620	0.36	+0.2
3,667,555	+		GFF3620	0.37	-1.7
3,667,561	-		GFF3620	0.37	-0.4
3,667,561	-		GFF3620	0.37	-0.3
3,667,561	-		GFF3620	0.37	+1.4
3,667,561	-		GFF3620	0.37	+0.5
3,667,561	-		GFF3620	0.37	-1.0
3,667,561	-		GFF3620	0.37	-0.4
3,667,584	+		GFF3620	0.40	-0.1
3,667,592	-		GFF3620	0.41	-2.7
3,667,592	-		GFF3620	0.41	+0.0
3,667,592	-		GFF3620	0.41	-0.2
3,667,614	+		GFF3620	0.44	-0.0
3,667,640	+		GFF3620	0.48	-0.7
3,667,645	-		GFF3620	0.48	-1.7
3,667,645	-		GFF3620	0.48	+0.6
3,667,667	-		GFF3620	0.51	-0.3
3,667,667	-		GFF3620	0.51	-1.4
3,667,677	-		GFF3620	0.53	+0.6
3,667,695	+		GFF3620	0.55	-0.6
3,667,713	+		GFF3620	0.57	-2.3
3,667,769	+		GFF3620	0.65	-1.0
3,667,769	+		GFF3620	0.65	-0.9
3,667,769	+		GFF3620	0.65	+0.1
3,667,771	-		GFF3620	0.65	-0.8
3,667,776	-		GFF3620	0.66	-0.6
3,667,782	-		GFF3620	0.66	-0.7
3,667,782	-		GFF3620	0.66	-0.6
3,667,782	-		GFF3620	0.66	+0.2
3,667,792	-		GFF3620	0.68	-0.3
3,667,792	-		GFF3620	0.68	-0.6
3,667,794	+		GFF3620	0.68	-1.4
3,667,805	+		GFF3620	0.69	-1.6
3,667,808	-		GFF3620	0.70	+0.3
3,667,843	+		GFF3620	0.74	-0.1
3,667,851	-		GFF3620	0.75	-0.5
3,667,851	-		GFF3620	0.75	+0.9
3,667,858	+		GFF3620	0.76	-0.2
3,667,866	-		GFF3620	0.77	-2.0
3,667,866	-		GFF3620	0.77	-1.6
3,667,886	-		GFF3620	0.80	+0.3
3,667,893	+		GFF3620	0.81	+0.2
3,667,893	+		GFF3620	0.81	+0.6
3,667,893	+		GFF3620	0.81	+0.6
3,667,933	+		GFF3620	0.86	+0.0
3,667,933	+		GFF3620	0.86	+0.5
3,667,933	+		GFF3620	0.86	+0.6
3,667,933	+		GFF3620	0.86	-0.2
3,667,933	+		GFF3620	0.86	+0.9
3,667,933	-		GFF3620	0.86	-0.5
3,667,941	-		GFF3620	0.87	-0.5
3,667,944	+		GFF3620	0.88	+0.1
3,667,944	+		GFF3620	0.88	-0.5
3,667,944	+		GFF3620	0.88	-0.6
3,667,946	-		GFF3620	0.88	+0.7
3,667,947	-		GFF3620	0.88	-0.1
3,667,952	-		GFF3620	0.89	-1.6
3,667,981	+				-0.7
3,667,997	+				-1.4
3,668,005	-				+0.9
3,668,005	-				+0.5
3,668,005	-				+0.3
3,668,005	-				+0.5
3,668,005	-				-0.6
3,668,005	-				-1.0
3,668,005	-				-0.2
3,668,028	+				-0.3
3,668,057	-				+0.6
3,668,074	-				-1.8
3,668,099	+				-0.5
3,668,111	+				-1.8
3,668,111	+				-0.6
3,668,111	+				+0.3
3,668,111	+				+0.5
3,668,111	+				+0.3
3,668,111	+				-1.2
3,668,111	+				-0.1
3,668,111	+				+0.3
3,668,119	-				+0.1
3,668,119	-				-0.1
3,668,119	-				-1.9
3,668,119	-				-1.5
3,668,119	-				-0.4
3,668,119	-				-0.4
3,668,119	-				-0.1
3,668,119	-				+0.1
3,668,142	+				+0.7
3,668,147	+				-2.1
3,668,152	+				+0.2
3,668,152	+				-0.3
3,668,152	+				-1.9
3,668,152	+				-0.2
3,668,152	+				-0.5
3,668,152	+				-2.1
3,668,152	+				+0.1
3,668,152	+				-0.3
3,668,152	+				+1.2
3,668,152	+				-2.2
3,668,152	+				-1.7
3,668,157	+				-0.5
3,668,157	+				-1.9
3,668,160	-				+0.1
3,668,160	-				+1.0
3,668,160	-				+0.0
3,668,160	-				+1.4
3,668,160	-				-2.8
3,668,160	-				-1.9
3,668,160	-				+0.3
3,668,160	-				+0.6
3,668,160	-				-0.4
3,668,160	-				-1.7
3,668,160	-				+0.4
3,668,160	-				-1.5
3,668,160	-				-0.4
3,668,165	+				+0.1
3,668,165	-				-1.5
3,668,165	-				-0.5
3,668,165	-				-1.4
3,668,165	-				+0.1
3,668,195	+				+0.6
3,668,203	-				+0.7
3,668,203	-				+0.2
3,668,205	+				-1.3
3,668,212	+				-0.8
3,668,212	+				-2.1
3,668,227	+				+0.2
3,668,249	+		GFF3621	0.10	-0.6
3,668,258	-		GFF3621	0.11	-0.4
3,668,280	+		GFF3621	0.12	-1.2
3,668,289	+		GFF3621	0.12	+1.0
3,668,294	+		GFF3621	0.13	+0.6
3,668,297	-		GFF3621	0.13	-0.7
3,668,302	+		GFF3621	0.13	-0.8
3,668,307	-		GFF3621	0.13	-1.0
3,668,340	+		GFF3621	0.15	-0.1
3,668,341	-		GFF3621	0.15	-0.5
3,668,348	-		GFF3621	0.15	-0.7
3,668,348	-		GFF3621	0.15	-0.3
3,668,351	+		GFF3621	0.15	-0.6
3,668,356	+		GFF3621	0.16	+0.0
3,668,374	-		GFF3621	0.16	-1.6
3,668,384	+		GFF3621	0.17	-2.2
3,668,392	+		GFF3621	0.17	+0.0
3,668,392	+		GFF3621	0.17	-0.7
3,668,400	-		GFF3621	0.18	-1.1
3,668,403	+		GFF3621	0.18	+0.4
3,668,414	+		GFF3621	0.18	-0.5
3,668,415	+		GFF3621	0.18	-0.1
3,668,416	-		GFF3621	0.18	+0.3
3,668,416	-		GFF3621	0.18	+0.8
3,668,422	-		GFF3621	0.19	+0.4
3,668,422	-		GFF3621	0.19	+0.8
3,668,434	+		GFF3621	0.19	+0.1
3,668,434	+		GFF3621	0.19	-0.4
3,668,442	-		GFF3621	0.20	-1.0
3,668,442	-		GFF3621	0.20	-0.5
3,668,442	-		GFF3621	0.20	-1.5
3,668,442	-		GFF3621	0.20	+1.0
3,668,442	-		GFF3621	0.20	-0.6
3,668,442	-		GFF3621	0.20	-2.1
3,668,442	-		GFF3621	0.20	+0.4
3,668,446	+		GFF3621	0.20	-0.6
3,668,459	-		GFF3621	0.21	+1.4
3,668,461	+		GFF3621	0.21	-1.6
3,668,464	-		GFF3621	0.21	+0.3
3,668,466	+		GFF3621	0.21	-1.1
3,668,473	-		GFF3621	0.21	-1.5
3,668,474	-		GFF3621	0.21	-0.2
3,668,518	+		GFF3621	0.23	-0.6
3,668,520	+		GFF3621	0.24	-0.2
3,668,520	+		GFF3621	0.24	-0.3
3,668,528	-		GFF3621	0.24	+0.3
3,668,554	+		GFF3621	0.25	-0.6
3,668,563	+		GFF3621	0.26	+1.6
3,668,563	+		GFF3621	0.26	+0.7
3,668,563	+		GFF3621	0.26	-0.3
3,668,571	-		GFF3621	0.26	+0.1
3,668,571	-		GFF3621	0.26	-1.8
3,668,571	-		GFF3621	0.26	+0.1
3,668,571	-		GFF3621	0.26	-3.5
3,668,571	-		GFF3621	0.26	+0.4
3,668,585	+		GFF3621	0.27	+1.1
3,668,585	+		GFF3621	0.27	+1.0
3,668,588	+		GFF3621	0.27	-1.7
3,668,593	-		GFF3621	0.27	-0.7
3,668,645	+		GFF3621	0.30	-1.3
3,668,650	+		GFF3621	0.30	-1.7
3,668,681	-		GFF3621	0.31	+0.4
3,668,681	-		GFF3621	0.31	-0.4
3,668,689	-		GFF3621	0.32	-2.0
3,668,714	+		GFF3621	0.33	+0.4
3,668,714	+		GFF3621	0.33	-0.2
3,668,714	+		GFF3621	0.33	+0.5
3,668,722	-		GFF3621	0.33	+0.5
3,668,732	-		GFF3621	0.34	+1.4
3,668,739	-		GFF3621	0.34	+0.4
3,668,800	+		GFF3621	0.37	+0.2
3,668,808	-		GFF3621	0.38	-1.2
3,668,855	+		GFF3621	0.40	-2.6
3,668,867	-		GFF3621	0.40	-0.4
3,668,867	-		GFF3621	0.40	-0.4
3,668,870	+		GFF3621	0.41	-0.4
3,668,870	+		GFF3621	0.41	-0.2
3,668,872	+		GFF3621	0.41	-1.9
3,668,873	-		GFF3621	0.41	-1.7
3,668,878	+		GFF3621	0.41	+0.1
3,668,878	+		GFF3621	0.41	-0.8
3,668,879	-		GFF3621	0.41	+0.5
3,668,880	-		GFF3621	0.41	-0.8
3,668,883	+		GFF3621	0.41	-1.4
3,668,883	+		GFF3621	0.41	+0.0
3,668,886	-		GFF3621	0.41	+0.8
3,668,888	+		GFF3621	0.41	+0.8
3,668,914	-		GFF3621	0.43	-0.8
3,668,914	-		GFF3621	0.43	+0.9
3,668,929	-		GFF3621	0.43	-0.2
3,668,936	-		GFF3621	0.44	-0.6
3,668,945	+		GFF3621	0.44	-0.5
3,668,945	+		GFF3621	0.44	+1.2
3,668,945	+		GFF3621	0.44	-0.9
3,668,950	+		GFF3621	0.44	-0.6
3,668,950	+		GFF3621	0.44	-0.2
3,668,950	+		GFF3621	0.44	-0.0
3,668,950	+		GFF3621	0.44	+0.2
3,668,953	-		GFF3621	0.45	+1.6
3,668,953	-		GFF3621	0.45	-0.7
3,668,953	-		GFF3621	0.45	+0.0
3,668,955	-		GFF3621	0.45	-0.5
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3,668,974	+		GFF3621	0.46	-0.6
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3,669,005	+		GFF3621	0.47	+0.3
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3,669,913	+				-2.1
3,669,913	+				+1.5
3,669,914	-				+0.8
3,669,918	+				-0.7
3,669,921	-				+1.5
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3,669,926	-				-2.1
3,669,934	+				-0.8
3,669,942	+				-2.4
3,669,942	+				-1.4
3,669,942	+				-0.1
3,669,955	-				+0.0
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3,669,968	+				-0.9
3,669,973	+				+0.8
3,669,997	+				-0.6
3,669,997	+				+0.5
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3,669,997	+				-0.4
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3,670,059	-				-0.6
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3,670,087	+				+0.7
3,670,090	+				+0.5
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3,670,092	+				+0.9
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3,670,100	-				+0.8
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