Strain Fitness in Sphingobium sp. HT1-2 around GFF3609

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,656,235	+		GFF3608	0.58	+1.4
3,656,235	+		GFF3608	0.58	-1.2
3,656,235	+		GFF3608	0.58	+1.0
3,656,235	+		GFF3608	0.58	-2.0
3,656,242	+		GFF3608	0.58	+0.2
3,656,243	-		GFF3608	0.58	-0.6
3,656,243	-		GFF3608	0.58	+0.4
3,656,243	-		GFF3608	0.58	+0.2
3,656,243	-		GFF3608	0.58	+0.6
3,656,243	-		GFF3608	0.58	-0.3
3,656,243	-		GFF3608	0.58	-0.2
3,656,243	-		GFF3608	0.58	+0.6
3,656,243	-		GFF3608	0.58	+0.7
3,656,301	+		GFF3608	0.64	+0.6
3,656,305	+		GFF3608	0.64	+0.6
3,656,314	-		GFF3608	0.65	-2.5
3,656,314	-		GFF3608	0.65	+0.0
3,656,330	+		GFF3608	0.66	-1.4
3,656,330	-		GFF3608	0.66	-0.4
3,656,335	+		GFF3608	0.67	+0.1
3,656,335	+		GFF3608	0.67	+0.8
3,656,335	+		GFF3608	0.67	-0.2
3,656,348	+		GFF3608	0.68	-0.6
3,656,371	+		GFF3608	0.70	+1.2
3,656,383	+		GFF3608	0.71	-1.7
3,656,383	+		GFF3608	0.71	+1.1
3,656,383	+		GFF3608	0.71	-0.1
3,656,383	+		GFF3608	0.71	+0.9
3,656,383	+		GFF3608	0.71	+0.4
3,656,383	+		GFF3608	0.71	+0.3
3,656,383	+		GFF3608	0.71	-1.2
3,656,383	+		GFF3608	0.71	-0.4
3,656,383	+		GFF3608	0.71	+0.2
3,656,383	+		GFF3608	0.71	-0.9
3,656,383	+		GFF3608	0.71	-0.6
3,656,383	+		GFF3608	0.71	+0.6
3,656,391	-		GFF3608	0.72	-0.6
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	+0.1
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	-1.8
3,656,391	-		GFF3608	0.72	+0.5
3,656,391	-		GFF3608	0.72	+0.6
3,656,391	-		GFF3608	0.72	-1.9
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	-0.8
3,656,391	-		GFF3608	0.72	-1.6
3,656,391	-		GFF3608	0.72	+0.3
3,656,391	-		GFF3608	0.72	+0.4
3,656,391	-		GFF3608	0.72	-0.2
3,656,409	+		GFF3608	0.73	-1.2
3,656,409	+		GFF3608	0.73	-1.8
3,656,410	-		GFF3608	0.73	+0.1
3,656,417	-		GFF3608	0.74	+0.0
3,656,417	-		GFF3608	0.74	-0.6
3,656,421	-		GFF3608	0.74	+1.1
3,656,436	+		GFF3608	0.75	-0.0
3,656,436	-		GFF3608	0.75	-0.1
3,656,436	-		GFF3608	0.75	-0.0
3,656,436	-		GFF3608	0.75	+1.7
3,656,436	-		GFF3608	0.75	+0.9
3,656,436	-		GFF3608	0.75	+0.3
3,656,436	-		GFF3608	0.75	-0.6
3,656,436	-		GFF3608	0.75	-1.2
3,656,446	-		GFF3608	0.76	-1.4
3,656,468	+		GFF3608	0.78	-0.2
3,656,476	-		GFF3608	0.79	-0.2
3,656,494	+		GFF3608	0.81	+0.2
3,656,494	+		GFF3608	0.81	-1.2
3,656,494	+		GFF3608	0.81	-0.7
3,656,502	-		GFF3608	0.81	+1.2
3,656,526	+		GFF3608	0.83	+0.8
3,656,531	+		GFF3608	0.84	+0.6
3,656,534	-		GFF3608	0.84	+0.3
3,656,534	-		GFF3608	0.84	-0.2
3,656,542	-		GFF3608	0.85	-0.3
3,656,546	-		GFF3608	0.85	+0.1
3,656,557	+		GFF3608	0.86	-1.1
3,656,565	-		GFF3608	0.87	-0.0
3,656,573	+		GFF3608	0.88	-0.4
3,656,591	+		GFF3608	0.89	-0.5
3,656,591	+		GFF3608	0.89	-0.1
3,656,591	+		GFF3608	0.89	+1.6
3,656,592	-		GFF3608	0.89	-1.2
3,656,592	-		GFF3608	0.89	-2.0
3,656,592	-		GFF3608	0.89	+0.6
3,656,592	-		GFF3608	0.89	-0.2
3,656,594	+		GFF3608	0.89	-0.1
3,656,599	-		GFF3608	0.90	-0.1
3,656,599	-		GFF3608	0.90	+0.3
3,656,599	-		GFF3608	0.90	+1.1
3,656,601	+				-0.9
3,656,601	+				+0.1
3,656,601	+				-0.7
3,656,608	+				+0.9
3,656,609	-				-1.2
3,656,609	-				+0.0
3,656,642	-				-1.8
3,656,648	-				-0.5
3,656,649	-				-0.5
3,656,652	+				-0.7
3,656,652	+				+0.1
3,656,669	-				-1.8
3,656,674	-				+0.3
3,656,684	-				-0.8
3,656,694	-				+0.3
3,656,720	-				-0.7
3,656,723	+				+1.8
3,656,725	+				-2.8
3,656,728	-				-0.6
3,656,733	+				+0.4
3,656,735	+				+0.2
3,656,748	-				-1.9
3,656,748	-				+0.7
3,656,772	-				-0.2
3,656,772	-				+0.7
3,656,831	+				-1.9
3,656,831	+				-2.4
3,656,834	-				+0.8
3,656,836	+				-1.5
3,656,839	-				-0.3
3,656,839	-				-0.8
3,656,839	-				+0.2
3,656,839	-				-0.6
3,656,839	-				+0.2
3,656,839	-				+0.3
3,656,893	-				-2.2
3,656,899	+				+1.6
3,656,929	+				+0.0
3,656,929	+				+0.1
3,656,929	+				-2.2
3,656,929	+				+1.1
3,656,929	+				-0.2
3,656,929	+				+0.7
3,656,929	+				+0.1
3,656,929	+				-1.2
3,656,929	+				-1.1
3,656,935	+				-2.3
3,656,937	-				-0.8
3,656,937	-				-0.9
3,656,937	-				-0.0
3,656,937	-				-1.8
3,656,940	+				+0.8
3,656,942	-				-0.0
3,656,960	+				-0.5
3,656,976	-				+0.3
3,657,032	+				+0.1
3,657,078	+				+1.0
3,657,078	+				-0.2
3,657,078	+				-0.7
3,657,084	+				-2.2
3,657,086	-				-1.8
3,657,099	+				+1.2
3,657,102	-				-1.2
3,657,107	-				-0.9
3,657,167	-				-0.9
3,657,167	-				+0.8
3,657,178	-				+0.6
3,657,209	-				+0.0
3,657,219	+				+1.1
3,657,220	+				+0.4
3,657,237	-				-0.9
3,657,294	+		GFF3609	0.19	-2.0
3,657,296	+		GFF3609	0.20	-0.6
3,657,296	+		GFF3609	0.20	+0.3
3,657,298	+		GFF3609	0.20	-1.8
3,657,300	-		GFF3609	0.21	-1.1
3,657,300	-		GFF3609	0.21	-1.6
3,657,304	-		GFF3609	0.22	-1.4
3,657,304	-		GFF3609	0.22	-0.1
3,657,320	-		GFF3609	0.25	-0.4
3,657,331	-		GFF3609	0.28	+0.5
3,657,345	-		GFF3609	0.32	-0.7
3,657,406	+		GFF3609	0.47	+0.3
3,657,428	+		GFF3609	0.52	+0.1
3,657,428	+		GFF3609	0.52	-0.6
3,657,428	+		GFF3609	0.52	-2.2
3,657,428	+		GFF3609	0.52	-0.9
3,657,436	-		GFF3609	0.54	+0.6
3,657,436	-		GFF3609	0.54	-0.2
3,657,436	-		GFF3609	0.54	-0.8
3,657,436	-		GFF3609	0.54	+1.3
3,657,436	-		GFF3609	0.54	+0.8
3,657,487	-		GFF3609	0.66	+0.6
3,657,492	-		GFF3609	0.68	+0.7
3,657,521	+		GFF3609	0.75	-1.2
3,657,527	+		GFF3609	0.76	+0.2
3,657,527	+		GFF3609	0.76	-0.2
3,657,528	-		GFF3609	0.76	+0.5
3,657,533	+		GFF3609	0.78	-0.9
3,657,534	+		GFF3609	0.78	+0.6
3,657,534	+		GFF3609	0.78	+0.2
3,657,535	-		GFF3609	0.78	+0.9
3,657,541	-		GFF3609	0.80	-0.4
3,657,543	+		GFF3609	0.80	+0.5
3,657,543	+		GFF3609	0.80	-1.0
3,657,551	-		GFF3609	0.82	-1.7
3,657,553	+		GFF3609	0.83	-0.0
3,657,553	-		GFF3609	0.83	-0.4
3,657,579	+		GFF3609	0.89	-1.6
3,657,607	+				-0.4
3,657,615	-				+1.0
3,657,617	+				-0.3
3,657,646	-				-0.2
3,657,653	+				+0.6
3,657,653	+				-0.2
3,657,659	+				+0.8
3,657,661	-				+0.8
3,657,662	-				-0.1
3,657,667	-				-1.2
3,657,691	-		GFF3610	0.11	-0.2
3,657,892	-		GFF3610	0.38	-0.4
3,657,892	-		GFF3610	0.38	-1.2
3,657,975	-		GFF3610	0.49	-0.4
3,657,987	-		GFF3610	0.51	+0.5
3,658,250	+		GFF3610	0.87	-0.7
3,658,266	-		GFF3610	0.89	+0.5
3,658,310	+				+0.3
3,658,310	+				-0.4
3,658,317	-				-0.0
3,658,323	-				-1.2
3,658,334	+				-0.9
3,658,334	+				+1.1
3,658,334	+				+0.8
3,658,334	+				+0.2
3,658,334	+				+0.9
3,658,334	+				-0.7
3,658,334	+				+0.3
3,658,334	+				+0.3
3,658,334	+				-0.4
3,658,334	+				-0.9
3,658,334	+				-0.7
3,658,334	+				-0.3
3,658,334	+				+1.3
3,658,334	+				-0.7
3,658,334	+				-0.2
3,658,340	+				-0.1
3,658,342	+				-2.2
3,658,342	-				-0.7
3,658,342	-				-1.2
3,658,342	-				-1.2
3,658,342	-				-0.6
3,658,342	-				-1.6
3,658,342	-				-1.5
3,658,342	-				+0.2
3,658,342	-				-0.7
3,658,342	-				+0.4
3,658,367	+				-0.6
3,658,375	+				-1.6
3,658,390	+				-0.2
3,658,393	+				-0.8
3,658,430	+				-0.0
3,658,438	+				-0.8
3,658,445	+				-0.0
3,658,446	-				-2.1
3,658,448	+				-0.7
3,658,448	+				-1.7
3,658,456	-				+1.6
3,658,456	-				-1.8
3,658,456	-				+0.3
3,658,456	-				-0.2
3,658,456	-				-2.2
3,658,456	-				-1.1
3,658,470	+				+1.9
3,658,471	+				+0.3
3,658,478	-				-1.1
3,658,478	-				+0.8
3,658,478	-				-0.0
3,658,486	-				+0.9
3,658,497	+				-0.1
3,658,503	-				-2.0
3,658,538	+		GFF3611	0.10	-0.8
3,658,538	+		GFF3611	0.10	-2.8
3,658,538	+		GFF3611	0.10	-1.7
3,658,538	+		GFF3611	0.10	-1.5
3,658,546	-		GFF3611	0.10	-0.8
3,658,546	-		GFF3611	0.10	+0.6
3,658,546	-		GFF3611	0.10	-0.2
3,658,546	-		GFF3611	0.10	+0.6
3,658,562	-		GFF3611	0.11	-0.2
3,658,586	+		GFF3611	0.12	-1.7
3,658,589	+		GFF3611	0.13	-0.4
3,658,589	+		GFF3611	0.13	-2.2
3,658,595	+		GFF3611	0.13	-1.4
3,658,597	-		GFF3611	0.13	-2.1
3,658,597	-		GFF3611	0.13	+0.1
3,658,597	-		GFF3611	0.13	-0.5
3,658,597	-		GFF3611	0.13	-1.9
3,658,597	-		GFF3611	0.13	+0.8
3,658,603	-		GFF3611	0.13	-1.0
3,658,603	-		GFF3611	0.13	+0.9
3,658,617	-		GFF3611	0.14	-0.7