Strain Fitness in Sphingobium sp. HT1-2 around GFF3532

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,576,670	+		GFF3531	0.41	-0.6
3,576,670	+		GFF3531	0.41	-0.1
3,576,670	+		GFF3531	0.41	-0.7
3,576,675	+		GFF3531	0.42	-2.8
3,576,678	-		GFF3531	0.42	+1.1
3,576,678	-		GFF3531	0.42	-1.2
3,576,678	-		GFF3531	0.42	-0.9
3,576,680	+		GFF3531	0.42	-1.4
3,576,683	-		GFF3531	0.42	-1.5
3,576,683	-		GFF3531	0.42	-0.2
3,576,692	+		GFF3531	0.43	+0.1
3,576,693	-		GFF3531	0.43	-0.3
3,576,700	+		GFF3531	0.44	+1.2
3,576,744	-		GFF3531	0.47	+1.0
3,576,750	-		GFF3531	0.47	+1.1
3,576,763	+		GFF3531	0.48	-0.3
3,576,763	+		GFF3531	0.48	+0.1
3,576,773	+		GFF3531	0.49	-0.4
3,576,773	+		GFF3531	0.49	+1.2
3,576,773	+		GFF3531	0.49	+0.9
3,576,781	-		GFF3531	0.49	-1.6
3,576,781	-		GFF3531	0.49	-0.3
3,576,786	+		GFF3531	0.50	+1.0
3,576,786	+		GFF3531	0.50	+1.4
3,576,789	-		GFF3531	0.50	-0.4
3,576,794	-		GFF3531	0.50	+0.2
3,576,794	-		GFF3531	0.50	-1.5
3,576,796	-		GFF3531	0.51	+0.6
3,576,798	+		GFF3531	0.51	-0.4
3,576,832	-		GFF3531	0.53	+1.0
3,576,837	-		GFF3531	0.53	-0.2
3,576,852	+		GFF3531	0.55	+0.7
3,576,860	-		GFF3531	0.55	-0.6
3,576,860	-		GFF3531	0.55	-1.5
3,576,885	+		GFF3531	0.57	-0.8
3,576,885	-		GFF3531	0.57	+0.6
3,576,885	-		GFF3531	0.57	-0.4
3,576,920	-		GFF3531	0.59	-0.4
3,576,920	-		GFF3531	0.59	-0.0
3,576,922	+		GFF3531	0.60	+1.4
3,576,944	-		GFF3531	0.61	+0.9
3,576,959	+		GFF3531	0.62	-0.4
3,576,967	-		GFF3531	0.63	-0.1
3,576,967	-		GFF3531	0.63	-1.4
3,576,986	+		GFF3531	0.64	+0.4
3,577,048	-		GFF3531	0.69	-0.5
3,577,057	+		GFF3531	0.69	+0.2
3,577,060	-		GFF3531	0.69	-0.7
3,577,101	-		GFF3531	0.72	-0.4
3,577,104	-		GFF3531	0.73	+1.2
3,577,104	-		GFF3531	0.73	-1.6
3,577,106	+		GFF3531	0.73	-0.5
3,577,124	-		GFF3531	0.74	+1.6
3,577,129	-		GFF3531	0.74	+0.3
3,577,131	+		GFF3531	0.74	+0.9
3,577,131	-		GFF3531	0.74	+0.4
3,577,140	-		GFF3531	0.75	+1.3
3,577,142	+		GFF3531	0.75	+0.8
3,577,144	+		GFF3531	0.75	+0.4
3,577,147	-		GFF3531	0.76	-2.2
3,577,168	+		GFF3531	0.77	+0.8
3,577,173	+		GFF3531	0.77	-2.2
3,577,222	+		GFF3531	0.81	-0.5
3,577,222	+		GFF3531	0.81	-1.5
3,577,222	+		GFF3531	0.81	+0.3
3,577,230	-		GFF3531	0.82	-0.0
3,577,230	-		GFF3531	0.82	-0.4
3,577,236	-		GFF3531	0.82	-0.2
3,577,240	-		GFF3531	0.82	-0.3
3,577,240	-		GFF3531	0.82	+1.0
3,577,260	-		GFF3531	0.84	-1.1
3,577,272	+		GFF3531	0.85	-0.2
3,577,279	+		GFF3531	0.85	-2.3
3,577,284	+		GFF3531	0.85	+0.1
3,577,287	-		GFF3531	0.86	-0.2
3,577,287	-		GFF3531	0.86	+0.4
3,577,313	+		GFF3531	0.87	-0.2
3,577,320	+		GFF3531	0.88	-0.8
3,577,320	+		GFF3531	0.88	-0.8
3,577,321	-		GFF3531	0.88	+0.5
3,577,323	-		GFF3531	0.88	-0.4
3,577,323	-		GFF3531	0.88	-0.7
3,577,328	-		GFF3531	0.89	+0.6
3,577,369	+				+0.4
3,577,369	+				-0.3
3,577,377	-				+0.7
3,577,413	-				-0.8
3,577,413	-				-0.2
3,577,417	-				-1.8
3,577,461	-				-0.8
3,577,461	-				-0.5
3,577,485	+				-1.7
3,577,507	+				+0.0
3,577,507	-				-0.4
3,577,511	+				-2.8
3,577,511	+				+0.3
3,577,511	+				-0.8
3,577,514	-				-1.9
3,577,518	+				-1.8
3,577,519	-				+0.1
3,577,521	-				-1.2
3,577,543	+				+0.1
3,577,548	+				-0.1
3,577,548	+				-1.9
3,577,551	-				-0.4
3,577,551	-				-0.3
3,577,551	-				-0.7
3,577,556	-				-0.9
3,577,569	-				+0.1
3,577,618	+				-1.2
3,577,665	-				+0.4
3,577,674	-				+0.5
3,577,687	-				+1.3
3,577,741	+		GFF3532	0.17	-2.0
3,577,741	+		GFF3532	0.17	-1.5
3,577,741	+		GFF3532	0.17	+1.0
3,577,741	+		GFF3532	0.17	-1.8
3,577,741	+		GFF3532	0.17	+0.4
3,577,741	+		GFF3532	0.17	-0.7
3,577,746	+		GFF3532	0.18	-1.2
3,577,754	-		GFF3532	0.20	+0.6
3,577,758	+		GFF3532	0.21	-1.5
3,577,786	-		GFF3532	0.27	+0.7
3,577,786	-		GFF3532	0.27	-2.2
3,577,790	+		GFF3532	0.28	-0.2
3,577,795	+		GFF3532	0.29	-0.5
3,577,802	+		GFF3532	0.31	+0.2
3,577,803	-		GFF3532	0.31	+0.4
3,577,808	+		GFF3532	0.32	+1.5
3,577,808	+		GFF3532	0.32	-1.1
3,577,808	+		GFF3532	0.32	-0.2
3,577,808	+		GFF3532	0.32	-1.4
3,577,809	+		GFF3532	0.32	-0.0
3,577,816	-		GFF3532	0.34	+1.0
3,577,816	-		GFF3532	0.34	-1.2
3,577,823	+		GFF3532	0.35	-1.0
3,577,844	+		GFF3532	0.40	-0.0
3,577,889	+		GFF3532	0.50	-1.4
3,577,889	+		GFF3532	0.50	-0.5
3,577,889	+		GFF3532	0.50	-0.4
3,577,889	+		GFF3532	0.50	+0.8
3,577,889	+		GFF3532	0.50	-2.6
3,577,890	-		GFF3532	0.50	+0.6
3,577,897	-		GFF3532	0.52	-1.7
3,577,897	-		GFF3532	0.52	+0.8
3,577,897	-		GFF3532	0.52	+0.4
3,577,897	-		GFF3532	0.52	+0.5
3,577,901	-		GFF3532	0.52	-0.1
3,577,915	-		GFF3532	0.55	-1.3
3,577,939	+		GFF3532	0.61	-0.2
3,577,990	+		GFF3532	0.72	-1.7
3,577,990	+		GFF3532	0.72	+1.7
3,577,990	+		GFF3532	0.72	+0.0
3,577,990	+		GFF3532	0.72	-2.0
3,577,990	+		GFF3532	0.72	-1.1
3,577,990	+		GFF3532	0.72	-1.3
3,577,990	+		GFF3532	0.72	-0.3
3,577,990	+		GFF3532	0.72	+0.2
3,577,990	+		GFF3532	0.72	-0.1
3,577,990	+		GFF3532	0.72	+0.1
3,577,998	-		GFF3532	0.74	-1.2
3,577,998	-		GFF3532	0.74	-0.5
3,578,013	+		GFF3532	0.77	-0.0
3,578,013	+		GFF3532	0.77	+1.3
3,578,021	-		GFF3532	0.79	-1.9
3,578,021	-		GFF3532	0.79	-1.0
3,578,035	+		GFF3532	0.82	-1.9
3,578,061	+		GFF3532	0.88	-0.1
3,578,082	-				-0.6
3,578,120	+				-1.2
3,578,128	+				-0.5
3,578,128	-				-0.4
3,578,133	-				+0.1
3,578,153	-				-0.2
3,578,163	+				-0.8
3,578,173	+				-0.7
3,578,173	+				-1.2
3,578,173	+				-1.5
3,578,173	+				-0.4
3,578,173	+				+1.3
3,578,173	+				+1.5
3,578,181	-				-1.6
3,578,181	-				-1.6
3,578,252	-				-1.9
3,578,260	+				-1.2
3,578,289	-				-2.0
3,578,325	+				+0.8
3,578,325	+				+0.4
3,578,325	+				-0.6
3,578,325	+				-1.2
3,578,326	+				+1.7
3,578,333	-				-0.5
3,578,333	-				+0.1
3,578,333	-				+1.0
3,578,355	-				-0.4
3,578,367	+				+1.0
3,578,368	+				-1.8
3,578,410	+		GFF3533	0.11	-1.3
3,578,435	+		GFF3533	0.12	-1.4
3,578,435	+		GFF3533	0.12	+0.0
3,578,448	+		GFF3533	0.13	-1.4
3,578,469	+		GFF3533	0.13	+1.4
3,578,488	+		GFF3533	0.14	+1.0
3,578,496	-		GFF3533	0.15	-1.2
3,578,519	-		GFF3533	0.16	+0.1
3,578,550	+		GFF3533	0.17	-0.6
3,578,556	+		GFF3533	0.17	-0.4
3,578,574	+		GFF3533	0.18	-0.6
3,578,574	+		GFF3533	0.18	+1.0
3,578,575	+		GFF3533	0.18	+1.1
3,578,582	-		GFF3533	0.18	-0.2
3,578,682	-		GFF3533	0.22	-0.5
3,578,775	-		GFF3533	0.26	-1.6
3,578,775	-		GFF3533	0.26	-0.8
3,578,780	-		GFF3533	0.26	-0.4
3,578,815	-		GFF3533	0.28	-2.1
3,578,822	+		GFF3533	0.28	-0.7
3,578,830	-		GFF3533	0.28	-1.2
3,578,830	-		GFF3533	0.28	+0.3
3,578,849	-		GFF3533	0.29	-1.4
3,578,905	+		GFF3533	0.32	-1.5
3,578,988	+		GFF3533	0.35	-1.5
3,578,997	+		GFF3533	0.35	-0.7
3,579,014	+		GFF3533	0.36	-0.4
3,579,072	+		GFF3533	0.38	-1.9