Strain Fitness in Sphingobium sp. HT1-2 around GFF3521

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,559,357	+				+0.6
3,559,359	+				+0.4
3,559,367	+				-1.2
3,559,375	-				-0.8
3,559,375	-				-0.8
3,559,377	+				-0.9
3,559,377	+				-0.4
3,559,380	-				-1.0
3,559,380	-				+0.2
3,559,380	-				-1.3
3,559,380	-				-2.4
3,559,380	-				+0.0
3,559,385	-				-0.6
3,559,385	-				-1.8
3,559,385	-				-0.0
3,559,402	-		GFF3520	0.10	+0.1
3,559,417	+		GFF3520	0.12	+1.0
3,559,442	+		GFF3520	0.15	+0.7
3,559,450	-		GFF3520	0.16	-2.0
3,559,450	-		GFF3520	0.16	+0.1
3,559,452	+		GFF3520	0.16	+0.8
3,559,460	-		GFF3520	0.17	+0.3
3,559,500	+		GFF3520	0.22	-2.7
3,559,500	+		GFF3520	0.22	-0.1
3,559,500	+		GFF3520	0.22	+1.0
3,559,507	-		GFF3520	0.23	+0.0
3,559,508	+		GFF3520	0.23	-0.4
3,559,508	-		GFF3520	0.23	-1.3
3,559,508	-		GFF3520	0.23	-2.1
3,559,512	+		GFF3520	0.23	-0.4
3,559,533	+		GFF3520	0.26	-1.1
3,559,559	+		GFF3520	0.29	+0.0
3,559,573	-		GFF3520	0.30	+0.2
3,559,583	-		GFF3520	0.31	+1.1
3,559,590	+		GFF3520	0.32	+1.7
3,559,602	+		GFF3520	0.34	-1.5
3,559,619	+		GFF3520	0.36	+0.1
3,559,674	-		GFF3520	0.42	-1.8
3,559,706	+		GFF3520	0.46	-0.2
3,559,709	-		GFF3520	0.46	-2.7
3,559,714	-		GFF3520	0.47	-1.0
3,559,714	-		GFF3520	0.47	-0.4
3,559,714	-		GFF3520	0.47	-1.7
3,559,727	-		GFF3520	0.48	+0.1
3,559,757	-		GFF3520	0.52	+0.2
3,559,765	+		GFF3520	0.53	-1.6
3,559,766	-		GFF3520	0.53	+0.2
3,559,771	-		GFF3520	0.53	-0.4
3,559,776	+		GFF3520	0.54	-1.8
3,559,800	+		GFF3520	0.57	-1.9
3,559,800	+		GFF3520	0.57	-1.0
3,559,800	+		GFF3520	0.57	+0.3
3,559,800	+		GFF3520	0.57	-0.8
3,559,805	-		GFF3520	0.57	+1.0
3,559,810	+		GFF3520	0.58	-0.2
3,559,810	+		GFF3520	0.58	+1.5
3,559,810	+		GFF3520	0.58	-1.2
3,559,810	+		GFF3520	0.58	+1.5
3,559,810	+		GFF3520	0.58	-0.4
3,559,816	-		GFF3520	0.59	-0.3
3,559,818	-		GFF3520	0.59	+1.5
3,559,818	-		GFF3520	0.59	+1.2
3,559,818	-		GFF3520	0.59	-1.3
3,559,818	-		GFF3520	0.59	-0.7
3,559,820	+		GFF3520	0.59	+0.1
3,559,821	+		GFF3520	0.59	-0.4
3,559,846	+		GFF3520	0.62	-0.1
3,559,846	+		GFF3520	0.62	+0.1
3,559,846	+		GFF3520	0.62	-1.2
3,559,846	+		GFF3520	0.62	-1.0
3,559,846	+		GFF3520	0.62	+0.2
3,559,849	-		GFF3520	0.62	-1.7
3,559,854	-		GFF3520	0.63	-1.0
3,559,854	-		GFF3520	0.63	-1.4
3,559,862	+		GFF3520	0.64	+1.0
3,559,862	+		GFF3520	0.64	-1.3
3,559,877	+		GFF3520	0.66	+0.3
3,559,877	+		GFF3520	0.66	+1.4
3,559,877	+		GFF3520	0.66	+0.9
3,559,877	+		GFF3520	0.66	+0.3
3,559,882	-		GFF3520	0.66	-1.2
3,559,885	-		GFF3520	0.67	-2.6
3,559,885	-		GFF3520	0.67	-1.5
3,559,885	-		GFF3520	0.67	-0.3
3,559,909	+		GFF3520	0.69	+0.9
3,559,926	+		GFF3520	0.71	-0.6
3,559,934	-		GFF3520	0.72	+0.5
3,559,979	-		GFF3520	0.77	-1.7
3,559,979	-		GFF3520	0.77	+0.6
3,559,998	+		GFF3520	0.80	-0.7
3,559,998	-		GFF3520	0.80	-0.3
3,560,004	+		GFF3520	0.80	-0.9
3,560,024	-		GFF3520	0.83	+0.7
3,560,024	-		GFF3520	0.83	-0.7
3,560,024	-		GFF3520	0.83	-2.4
3,560,044	+		GFF3520	0.85	+0.0
3,560,045	+		GFF3520	0.85	+0.1
3,560,046	+		GFF3520	0.85	-1.3
3,560,046	-		GFF3520	0.85	-0.4
3,560,052	-		GFF3520	0.86	-2.6
3,560,053	-		GFF3520	0.86	+1.2
3,560,053	-		GFF3520	0.86	+1.3
3,560,053	-		GFF3520	0.86	-1.9
3,560,053	-		GFF3520	0.86	-2.2
3,560,072	-		GFF3520	0.88	+0.3
3,560,079	-		GFF3520	0.89	+1.1
3,560,079	-		GFF3520	0.89	-1.3
3,560,079	-		GFF3520	0.89	-2.5
3,560,081	+		GFF3520	0.89	-1.4
3,560,089	-				+0.1
3,560,091	-				-1.7
3,560,098	+				-0.1
3,560,103	+				-0.8
3,560,103	+				+0.6
3,560,103	+				-1.6
3,560,103	+				-1.6
3,560,103	+				+0.3
3,560,103	+				-0.3
3,560,108	+				+0.8
3,560,111	-				-0.3
3,560,111	-				+0.6
3,560,111	-				-2.4
3,560,111	-				-2.5
3,560,111	-				-2.8
3,560,111	-				-1.8
3,560,121	+				+0.1
3,560,121	+				-0.8
3,560,129	-				+0.8
3,560,129	-				+0.5
3,560,133	+				-1.7
3,560,140	+				+0.9
3,560,141	+				+0.7
3,560,148	-				-2.0
3,560,148	-				+1.1
3,560,163	+				-0.7
3,560,163	+				+0.3
3,560,168	+				-2.2
3,560,178	+				-0.3
3,560,234	+				-2.2
3,560,234	+				+0.4
3,560,234	+				+0.6
3,560,241	-				-1.1
3,560,241	-				-1.9
3,560,241	-				-0.2
3,560,242	-				-0.7
3,560,306	+				-0.3
3,560,314	-				-0.5
3,560,333	-				-1.4
3,560,353	+				-1.0
3,560,354	+				+2.3
3,560,355	+				-0.8
3,560,360	+				-0.1
3,560,370	+				+0.7
3,560,372	-				-2.1
3,560,372	-				-0.0
3,560,372	-				-0.3
3,560,410	+				-0.5
3,560,413	-				-0.7
3,560,424	+		GFF3521	0.10	-1.8
3,560,434	+		GFF3521	0.12	+0.4
3,560,456	+		GFF3521	0.15	+0.2
3,560,457	+		GFF3521	0.15	-1.7
3,560,457	+		GFF3521	0.15	-0.5
3,560,457	+		GFF3521	0.15	+0.8
3,560,464	-		GFF3521	0.16	+0.6
3,560,464	-		GFF3521	0.16	-1.2
3,560,465	-		GFF3521	0.16	+1.4
3,560,466	+		GFF3521	0.17	-0.1
3,560,466	+		GFF3521	0.17	+0.2
3,560,474	-		GFF3521	0.18	-0.7
3,560,474	-		GFF3521	0.18	+0.6
3,560,474	-		GFF3521	0.18	+1.1
3,560,474	-		GFF3521	0.18	-2.0
3,560,490	+		GFF3521	0.20	-1.3
3,560,490	+		GFF3521	0.20	-1.2
3,560,490	+		GFF3521	0.20	-0.9
3,560,490	+		GFF3521	0.20	-1.1
3,560,490	+		GFF3521	0.20	-1.8
3,560,490	+		GFF3521	0.20	+0.0
3,560,490	+		GFF3521	0.20	-0.3
3,560,490	+		GFF3521	0.20	-0.7
3,560,490	+		GFF3521	0.20	-1.9
3,560,498	-		GFF3521	0.21	-0.1
3,560,498	-		GFF3521	0.21	+0.6
3,560,502	+		GFF3521	0.22	+1.1
3,560,521	+		GFF3521	0.25	+0.5
3,560,521	+		GFF3521	0.25	+0.1
3,560,525	+		GFF3521	0.25	-1.3
3,560,529	-		GFF3521	0.26	+0.3
3,560,533	-		GFF3521	0.27	-0.5
3,560,534	-		GFF3521	0.27	+0.3
3,560,534	-		GFF3521	0.27	+0.3
3,560,539	+		GFF3521	0.28	+0.7
3,560,564	+		GFF3521	0.31	-2.1
3,560,565	-		GFF3521	0.32	+0.0
3,560,565	-		GFF3521	0.32	-0.7
3,560,585	+		GFF3521	0.35	-0.8
3,560,585	+		GFF3521	0.35	+0.9
3,560,593	-		GFF3521	0.36	+0.3
3,560,593	-		GFF3521	0.36	+1.2
3,560,598	+		GFF3521	0.37	-1.0
3,560,606	-		GFF3521	0.38	-1.3
3,560,617	-		GFF3521	0.39	-1.0
3,560,641	+		GFF3521	0.43	-2.6
3,560,642	+		GFF3521	0.43	-0.2
3,560,648	+		GFF3521	0.44	-0.6
3,560,664	+		GFF3521	0.47	+0.2
3,560,695	+		GFF3521	0.51	+1.1
3,560,703	-		GFF3521	0.52	-0.5
3,560,708	+		GFF3521	0.53	-0.2
3,560,716	+		GFF3521	0.54	-0.9
3,560,716	+		GFF3521	0.54	-1.5
3,560,716	+		GFF3521	0.54	-0.4
3,560,716	+		GFF3521	0.54	-2.2
3,560,716	+		GFF3521	0.54	+0.7
3,560,724	-		GFF3521	0.56	+1.1
3,560,724	-		GFF3521	0.56	-1.4
3,560,750	+		GFF3521	0.60	-0.5
3,560,751	-		GFF3521	0.60	+0.1
3,560,751	-		GFF3521	0.60	-0.3
3,560,760	+		GFF3521	0.61	-0.5
3,560,791	+		GFF3521	0.66	+0.6
3,560,791	+		GFF3521	0.66	+0.2
3,560,799	-		GFF3521	0.67	+0.0
3,560,806	+		GFF3521	0.68	+0.6
3,560,833	-		GFF3521	0.72	-0.2
3,560,866	+		GFF3521	0.77	+0.8
3,560,872	+		GFF3521	0.78	+0.3
3,560,896	-		GFF3521	0.82	+0.1
3,560,902	+		GFF3521	0.83	-1.7
3,560,916	-		GFF3521	0.85	-0.8
3,560,921	-		GFF3521	0.85	-1.7
3,560,927	+		GFF3521	0.86	-0.9
3,560,931	-		GFF3521	0.87	-0.5
3,560,939	-		GFF3521	0.88	-0.0
3,560,948	+		GFF3521	0.90	+1.1
3,560,949	+		GFF3521	0.90	-0.2
3,560,949	+		GFF3521	0.90	+0.3
3,560,949	+		GFF3521	0.90	-1.1
3,560,955	-				+0.1
3,560,957	-				-1.9
3,560,957	-				-1.1
3,560,957	-				-1.3
3,560,975	-				+0.5
3,560,977	+				+1.0
3,561,004	+				-0.6
3,561,032	-				-0.5
3,561,056	+				-1.6
3,561,062	+				+0.3
3,561,062	+				-0.1
3,561,064	-				+1.3
3,561,083	-				-0.4
3,561,089	-				-1.3
3,561,091	+				-0.6
3,561,099	-				-1.1
3,561,099	-				-0.5
3,561,099	-				-0.0
3,561,107	-				+0.3
3,561,110	+				+1.3
3,561,110	+				-2.3
3,561,110	+				-1.8
3,561,110	+				+0.0
3,561,117	-				-0.6
3,561,120	+				-0.9
3,561,120	+				-0.3
3,561,128	-				-0.0
3,561,139	+				+1.6
3,561,139	+				+1.4
3,561,139	+				-1.2
3,561,139	+				-0.5
3,561,139	+				+1.2
3,561,139	+				-0.5
3,561,139	+				+0.5
3,561,140	+				+1.0
3,561,147	-				-1.0
3,561,147	-				-1.0
3,561,147	-				+0.3
3,561,147	-				-0.0
3,561,147	-				+0.4
3,561,147	-				+1.0
3,561,147	-				+0.4
3,561,147	-				+0.6
3,561,147	-				+0.6
3,561,169	-				+1.3
3,561,171	-				+0.6
3,561,187	+				+0.3
3,561,196	+				-0.7
3,561,196	+				-1.5
3,561,196	+				-0.9
3,561,196	+				-1.3
3,561,204	-				-2.1
3,561,228	-				+0.5
3,561,230	-				+0.0
3,561,252	+				+1.5
3,561,262	-				-1.5
3,561,275	+				-1.0
3,561,280	+				+0.3
3,561,281	-				+0.3
3,561,281	-				-0.2
3,561,282	+				+1.4
3,561,282	+				+0.3
3,561,282	+				-0.3
3,561,288	-				-0.8
3,561,288	-				-0.1
3,561,290	-				+1.0
3,561,292	-				-1.7
3,561,293	-				-1.0
3,561,302	-				+0.3
3,561,315	+				+0.7
3,561,315	+				-1.0
3,561,316	+				+0.8
3,561,325	+				-0.9
3,561,325	+				-1.3
3,561,333	-				-1.2
3,561,333	-				-0.4
3,561,333	-				-0.5
3,561,334	-				-0.4
3,561,335	+				-0.5
3,561,338	-				+0.5
3,561,340	+				-0.3
3,561,349	+				+0.6
3,561,349	+				+0.7
3,561,349	+				+0.1
3,561,349	-				+0.2
3,561,357	-				-0.8
3,561,357	-				-0.3
3,561,357	-				+0.0
3,561,357	-				-2.2
3,561,357	-				+0.6
3,561,375	+		GFF3522	0.10	+0.1
3,561,377	+		GFF3522	0.10	+0.2
3,561,377	+		GFF3522	0.10	-1.0
3,561,388	+		GFF3522	0.11	-1.7
3,561,404	-		GFF3522	0.12	-0.7
3,561,426	-		GFF3522	0.13	+0.4
3,561,462	-		GFF3522	0.14	+0.7
3,561,486	-		GFF3522	0.15	-0.7
3,561,486	-		GFF3522	0.15	-2.0
3,561,514	+		GFF3522	0.17	-0.7
3,561,514	+		GFF3522	0.17	-1.8
3,561,514	+		GFF3522	0.17	-0.9
3,561,514	+		GFF3522	0.17	-0.5
3,561,517	-		GFF3522	0.17	-0.4
3,561,522	+		GFF3522	0.17	-1.7
3,561,522	+		GFF3522	0.17	+0.1
3,561,522	+		GFF3522	0.17	+0.0
3,561,522	-		GFF3522	0.17	+0.9
3,561,530	-		GFF3522	0.17	+0.3
3,561,535	-		GFF3522	0.18	-0.3
3,561,535	-		GFF3522	0.18	-0.8
3,561,540	-		GFF3522	0.18	+0.6
3,561,547	+		GFF3522	0.18	+0.1
3,561,548	+		GFF3522	0.18	-1.8
3,561,549	-		GFF3522	0.18	-0.9
3,561,555	-		GFF3522	0.19	-1.7
3,561,571	+		GFF3522	0.19	-0.5
3,561,571	+		GFF3522	0.19	-0.2
3,561,571	+		GFF3522	0.19	+0.2
3,561,571	+		GFF3522	0.19	-0.6
3,561,571	+		GFF3522	0.19	-1.0
3,561,571	+		GFF3522	0.19	-0.2
3,561,573	+		GFF3522	0.20	-1.5
3,561,578	+		GFF3522	0.20	+0.9
3,561,579	-		GFF3522	0.20	-0.0
3,561,579	-		GFF3522	0.20	-1.5
3,561,579	-		GFF3522	0.20	+1.3
3,561,581	-		GFF3522	0.20	-0.4
3,561,581	-		GFF3522	0.20	-0.5
3,561,583	+		GFF3522	0.20	-2.2
3,561,601	+		GFF3522	0.21	-1.4
3,561,603	-		GFF3522	0.21	-0.9
3,561,622	-		GFF3522	0.22	-1.1
3,561,647	+		GFF3522	0.23	+1.0
3,561,651	-		GFF3522	0.23	-0.3
3,561,652	+		GFF3522	0.23	-1.3
3,561,660	+		GFF3522	0.24	-1.5
3,561,660	+		GFF3522	0.24	-0.1
3,561,660	+		GFF3522	0.24	+0.4
3,561,660	+		GFF3522	0.24	-1.3
3,561,668	-		GFF3522	0.24	+1.4
3,561,676	+		GFF3522	0.24	-1.0
3,561,676	+		GFF3522	0.24	-1.6
3,561,676	+		GFF3522	0.24	-1.9
3,561,676	+		GFF3522	0.24	-1.4
3,561,684	-		GFF3522	0.25	-1.4
3,561,684	-		GFF3522	0.25	+0.1
3,561,684	-		GFF3522	0.25	-0.1
3,561,702	-		GFF3522	0.26	+0.0
3,561,762	+		GFF3522	0.28	-1.7
3,561,762	+		GFF3522	0.28	-0.2
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