Strain Fitness in Sphingobium sp. HT1-2 around GFF3471

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3469 and GFF3470 overlap by 8 nucleotidesGFF3470 and GFF3471 are separated by 67 nucleotidesGFF3471 and GFF3472 are separated by 53 nucleotidesGFF3472 and GFF3473 are separated by 46 nucleotides GFF3469 - ATP synthase F0 sector subunit b (EC 3.6.3.14), at 3,510,580 to 3,511,194 GFF3469 GFF3470 - ATP synthase F0 sector subunit b, at 3,511,187 to 3,511,681 GFF3470 GFF3471 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 3,511,749 to 3,511,976 GFF3471 GFF3472 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 3,512,030 to 3,512,815 GFF3472 GFF3473 - ATP synthase protein I, at 3,512,862 to 3,513,185 GFF3473 Position (kb) 3511 3512Strain fitness (log2 ratio) -2 -1 0 1at 3511.732 kb on - strandat 3512.877 kb on - strandat 3512.901 kb on - strand, within GFF3473at 3512.956 kb on - strand, within GFF3473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
3,511,732 - +1.1
3,512,877 - +0.7
3,512,901 - GFF3473 0.12 -2.1
3,512,956 - GFF3473 0.29 -0.6

Or see this region's nucleotide sequence