Strain Fitness in Sphingobium sp. HT1-2 around GFF3457

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,496,656	-		GFF3456	0.18	-0.2
3,496,656	-		GFF3456	0.18	-2.3
3,496,656	-		GFF3456	0.18	+0.9
3,496,656	-		GFF3456	0.18	-1.4
3,496,656	-		GFF3456	0.18	+0.8
3,496,656	-		GFF3456	0.18	-0.5
3,496,656	-		GFF3456	0.18	+1.8
3,496,661	-		GFF3456	0.19	+0.9
3,496,687	-		GFF3456	0.22	+0.7
3,496,707	-		GFF3456	0.24	+0.3
3,496,729	+		GFF3456	0.26	-0.3
3,496,729	+		GFF3456	0.26	-1.4
3,496,729	+		GFF3456	0.26	-0.2
3,496,737	-		GFF3456	0.27	-1.3
3,496,737	-		GFF3456	0.27	+0.4
3,496,737	-		GFF3456	0.27	+0.6
3,496,737	-		GFF3456	0.27	-0.9
3,496,756	-		GFF3456	0.28	-1.3
3,496,757	-		GFF3456	0.29	-0.1
3,496,757	-		GFF3456	0.29	-0.7
3,496,761	-		GFF3456	0.29	+0.9
3,496,787	+		GFF3456	0.32	-0.3
3,496,787	+		GFF3456	0.32	-1.3
3,496,787	+		GFF3456	0.32	-0.0
3,496,787	+		GFF3456	0.32	+0.3
3,496,787	+		GFF3456	0.32	-2.2
3,496,787	+		GFF3456	0.32	-2.4
3,496,787	+		GFF3456	0.32	-0.2
3,496,787	+		GFF3456	0.32	-1.3
3,496,787	+		GFF3456	0.32	+0.8
3,496,787	+		GFF3456	0.32	+1.2
3,496,787	+		GFF3456	0.32	-1.7
3,496,787	+		GFF3456	0.32	+0.3
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	-0.4
3,496,787	+		GFF3456	0.32	+0.2
3,496,794	-		GFF3456	0.32	+0.2
3,496,794	-		GFF3456	0.32	-0.8
3,496,795	-		GFF3456	0.32	+0.4
3,496,795	-		GFF3456	0.32	-1.3
3,496,795	-		GFF3456	0.32	-0.5
3,496,795	-		GFF3456	0.32	-0.0
3,496,795	-		GFF3456	0.32	-0.7
3,496,795	-		GFF3456	0.32	-0.2
3,496,795	-		GFF3456	0.32	-0.6
3,496,795	-		GFF3456	0.32	+0.2
3,496,795	-		GFF3456	0.32	+0.1
3,496,795	-		GFF3456	0.32	-0.4
3,496,795	-		GFF3456	0.32	+0.3
3,496,811	+		GFF3456	0.34	-0.1
3,496,813	-		GFF3456	0.34	+0.4
3,496,813	-		GFF3456	0.34	-2.3
3,496,821	+		GFF3456	0.35	-1.5
3,496,829	-		GFF3456	0.36	+0.1
3,496,829	-		GFF3456	0.36	-2.3
3,496,829	-		GFF3456	0.36	-1.8
3,496,851	-		GFF3456	0.38	-1.0
3,496,872	+		GFF3456	0.40	+0.9
3,496,872	+		GFF3456	0.40	-0.6
3,496,872	+		GFF3456	0.40	-2.5
3,496,890	+		GFF3456	0.42	+0.1
3,496,891	+		GFF3456	0.42	-0.6
3,496,891	+		GFF3456	0.42	-0.1
3,496,891	+		GFF3456	0.42	-0.9
3,496,891	+		GFF3456	0.42	+0.6
3,496,899	-		GFF3456	0.43	-0.2
3,496,899	-		GFF3456	0.43	+0.6
3,496,911	-		GFF3456	0.44	-1.6
3,496,916	+		GFF3456	0.44	-0.5
3,496,921	+		GFF3456	0.45	+1.3
3,496,924	-		GFF3456	0.45	+0.1
3,496,929	-		GFF3456	0.46	-1.0
3,496,929	-		GFF3456	0.46	-2.0
3,496,929	-		GFF3456	0.46	-0.4
3,496,929	-		GFF3456	0.46	-1.0
3,496,943	+		GFF3456	0.47	-0.1
3,496,945	+		GFF3456	0.47	-1.4
3,496,947	-		GFF3456	0.48	+0.2
3,496,955	+		GFF3456	0.48	+0.7
3,496,955	+		GFF3456	0.48	-1.4
3,496,961	-		GFF3456	0.49	-2.3
3,496,971	+		GFF3456	0.50	-0.8
3,496,971	+		GFF3456	0.50	-0.2
3,496,971	+		GFF3456	0.50	-1.2
3,496,979	-		GFF3456	0.51	-0.7
3,496,981	+		GFF3456	0.51	+0.2
3,496,981	+		GFF3456	0.51	+0.1
3,496,981	+		GFF3456	0.51	-1.1
3,496,989	-		GFF3456	0.52	+0.3
3,496,989	-		GFF3456	0.52	-0.4
3,496,989	-		GFF3456	0.52	+1.5
3,496,989	-		GFF3456	0.52	-1.1
3,496,989	-		GFF3456	0.52	+0.4
3,496,989	-		GFF3456	0.52	-0.6
3,496,989	-		GFF3456	0.52	+1.1
3,496,989	-		GFF3456	0.52	-0.1
3,496,994	+		GFF3456	0.52	+0.7
3,496,994	+		GFF3456	0.52	+0.3
3,496,995	-		GFF3456	0.52	-0.1
3,496,997	+		GFF3456	0.53	+1.6
3,497,000	-		GFF3456	0.53	-0.2
3,497,002	-		GFF3456	0.53	-1.3
3,497,012	-		GFF3456	0.54	+0.6
3,497,022	+		GFF3456	0.55	+0.8
3,497,022	-		GFF3456	0.55	+0.3
3,497,025	-		GFF3456	0.55	-1.0
3,497,027	+		GFF3456	0.56	+0.1
3,497,030	-		GFF3456	0.56	-0.8
3,497,034	+		GFF3456	0.56	+0.1
3,497,034	+		GFF3456	0.56	-0.5
3,497,042	-		GFF3456	0.57	-1.7
3,497,042	-		GFF3456	0.57	-1.0
3,497,053	-		GFF3456	0.58	-0.5
3,497,070	+		GFF3456	0.60	-1.5
3,497,070	+		GFF3456	0.60	-0.5
3,497,070	-		GFF3456	0.60	+0.1
3,497,087	+		GFF3456	0.62	-0.5
3,497,087	+		GFF3456	0.62	-0.5
3,497,095	-		GFF3456	0.62	+0.8
3,497,095	-		GFF3456	0.62	+0.1
3,497,119	+		GFF3456	0.65	-1.7
3,497,121	-		GFF3456	0.65	-0.7
3,497,121	-		GFF3456	0.65	-2.2
3,497,136	+		GFF3456	0.66	-0.5
3,497,139	+		GFF3456	0.67	+0.5
3,497,182	+		GFF3456	0.71	-0.3
3,497,182	+		GFF3456	0.71	+0.7
3,497,205	+		GFF3456	0.73	-0.5
3,497,244	+		GFF3456	0.77	-0.6
3,497,246	+		GFF3456	0.77	-1.6
3,497,246	+		GFF3456	0.77	-2.6
3,497,246	+		GFF3456	0.77	-0.8
3,497,254	-		GFF3456	0.78	-1.5
3,497,254	-		GFF3456	0.78	-0.0
3,497,260	+		GFF3456	0.79	+0.1
3,497,269	-		GFF3456	0.80	-1.2
3,497,287	+		GFF3456	0.82	-0.5
3,497,288	+		GFF3456	0.82	+0.2
3,497,297	-		GFF3456	0.83	-0.9
3,497,297	-		GFF3456	0.83	-0.3
3,497,311	+		GFF3456	0.84	-0.8
3,497,311	+		GFF3456	0.84	-1.1
3,497,311	+		GFF3456	0.84	-2.1
3,497,311	+		GFF3456	0.84	-1.7
3,497,311	+		GFF3456	0.84	-0.6
3,497,311	+		GFF3456	0.84	-2.0
3,497,311	+		GFF3456	0.84	-0.6
3,497,319	+		GFF3456	0.85	-0.3
3,497,319	-		GFF3456	0.85	+0.2
3,497,319	-		GFF3456	0.85	+1.0
3,497,319	-		GFF3456	0.85	+0.7
3,497,319	-		GFF3456	0.85	-0.5
3,497,319	-		GFF3456	0.85	-0.8
3,497,319	-		GFF3456	0.85	-0.7
3,497,319	-		GFF3456	0.85	+0.0
3,497,319	-		GFF3456	0.85	+0.3
3,497,362	-		GFF3456	0.89	-0.4
3,497,390	+				+0.3
3,497,394	-				+0.2
3,497,417	+				-0.4
3,497,450	+				+0.5
3,497,455	+				-1.7
3,497,463	-				+0.7
3,497,494	-				+0.1
3,497,505	+				-0.3
3,497,513	-				+0.3
3,497,513	-				+0.2
3,497,520	+				-0.9
3,497,529	+				+0.2
3,497,529	+				+0.8
3,497,529	+				+0.9
3,497,535	+				+0.7
3,497,537	-				-0.7
3,497,537	-				-1.2
3,497,537	-				+0.7
3,497,556	-				-1.8
3,497,589	+				-0.3
3,497,611	-				-0.3
3,497,628	+				-0.6
3,497,641	-				+0.1
3,497,644	+				+0.1
3,497,649	+				+0.7
3,497,649	+				+0.5
3,497,649	+				-2.2
3,497,649	+				-2.3
3,497,654	+				-0.1
3,497,657	-				+0.2
3,497,657	-				+1.6
3,497,662	+				+0.6
3,497,662	-				+0.2
3,497,667	-				-2.2
3,497,682	-				+0.3
3,497,711	+		GFF3457	0.14	-0.6
3,497,718	+		GFF3457	0.16	+0.2
3,497,719	-		GFF3457	0.16	+0.5
3,497,757	+		GFF3457	0.25	+0.6
3,497,783	+		GFF3457	0.31	-1.4
3,497,806	-		GFF3457	0.37	-1.8
3,497,807	+		GFF3457	0.37	-0.8
3,497,807	+		GFF3457	0.37	-0.3
3,497,812	+		GFF3457	0.38	-2.0
3,497,815	-		GFF3457	0.39	-1.5
3,497,838	+		GFF3457	0.45	+0.1
3,497,840	-		GFF3457	0.45	-0.4
3,497,845	-		GFF3457	0.46	+0.6
3,497,872	-		GFF3457	0.53	+0.6
3,497,872	-		GFF3457	0.53	+0.6
3,497,906	-		GFF3457	0.61	-2.9
3,497,911	-		GFF3457	0.62	+0.9
3,497,915	+		GFF3457	0.63	-1.4
3,497,922	+		GFF3457	0.65	+0.0
3,497,924	+		GFF3457	0.65	-2.4
3,497,924	+		GFF3457	0.65	-1.4
3,497,924	+		GFF3457	0.65	-1.0
3,497,924	+		GFF3457	0.65	-0.0
3,497,930	-		GFF3457	0.67	-0.1
3,497,931	+		GFF3457	0.67	-0.3
3,497,932	-		GFF3457	0.67	-0.0
3,497,932	-		GFF3457	0.67	+1.0
3,497,935	+		GFF3457	0.68	+0.5
3,497,935	+		GFF3457	0.68	-1.4
3,497,940	+		GFF3457	0.69	-0.5
3,497,945	-		GFF3457	0.70	-1.1
3,497,953	-		GFF3457	0.72	-0.6
3,497,967	+		GFF3457	0.76	+0.8
3,497,967	+		GFF3457	0.76	-0.1
3,497,967	+		GFF3457	0.76	-0.0
3,497,967	+		GFF3457	0.76	+1.5
3,497,975	-		GFF3457	0.77	+0.8
3,497,975	-		GFF3457	0.77	-1.6
3,497,975	-		GFF3457	0.77	-1.0
3,497,983	-		GFF3457	0.79	-1.7
3,498,025	+		GFF3457	0.89	-0.7
3,498,030	+				-0.0
3,498,038	-				+0.8
3,498,043	-				+0.3
3,498,045	-				-0.4
3,498,048	-				+0.4
3,498,054	-				+0.2
3,498,084	-				+0.8
3,498,181	+				-2.8
3,498,183	+				-1.2
3,498,184	-				-2.9
3,498,191	-				-1.3
3,498,194	-				+0.7
3,498,200	-				-1.6
3,498,205	+				-2.4
3,498,205	+				-3.0
3,498,205	+				-1.5
3,498,213	-				-1.9
3,498,223	+				-2.8
3,498,227	-				-3.2
3,498,235	-				+0.0
3,498,247	-				-2.9
3,498,247	-				-2.2
3,498,262	-		GFF3458	0.10	-2.7
3,498,282	+		GFF3458	0.12	-2.0
3,498,282	+		GFF3458	0.12	-0.7
3,498,295	+		GFF3458	0.14	-1.5
3,498,295	+		GFF3458	0.14	-1.8
3,498,303	-		GFF3458	0.14	-1.8
3,498,303	-		GFF3458	0.14	-2.0
3,498,328	-		GFF3458	0.17	-0.3
3,498,338	+		GFF3458	0.18	-0.2
3,498,338	+		GFF3458	0.18	-3.2
3,498,338	+		GFF3458	0.18	-1.1
3,498,338	+		GFF3458	0.18	-2.7
3,498,338	+		GFF3458	0.18	-1.7
3,498,338	+		GFF3458	0.18	-2.4
3,498,338	+		GFF3458	0.18	-1.2
3,498,338	+		GFF3458	0.18	-3.3
3,498,345	-		GFF3458	0.18	-3.3
3,498,346	-		GFF3458	0.18	-2.2
3,498,346	-		GFF3458	0.18	-1.8
3,498,346	-		GFF3458	0.18	-2.7
3,498,346	-		GFF3458	0.18	-2.4
3,498,346	-		GFF3458	0.18	-1.3
3,498,346	-		GFF3458	0.18	-2.0
3,498,346	-		GFF3458	0.18	-2.0
3,498,346	-		GFF3458	0.18	-1.3
3,498,346	-		GFF3458	0.18	+0.3
3,498,346	-		GFF3458	0.18	-1.8
3,498,346	-		GFF3458	0.18	-2.8
3,498,356	-		GFF3458	0.19	-1.5
3,498,380	+		GFF3458	0.22	-2.3
3,498,381	+		GFF3458	0.22	-0.1
3,498,386	+		GFF3458	0.22	-2.6
3,498,389	-		GFF3458	0.23	-2.8
3,498,389	-		GFF3458	0.23	-2.3
3,498,390	+		GFF3458	0.23	-1.7
3,498,391	+		GFF3458	0.23	-2.7
3,498,398	-		GFF3458	0.23	-3.7
3,498,399	-		GFF3458	0.23	-2.5
3,498,399	-		GFF3458	0.23	-2.6
3,498,399	-		GFF3458	0.23	-2.3
3,498,448	+		GFF3458	0.28	-1.4
3,498,456	+		GFF3458	0.29	-2.0
3,498,457	-		GFF3458	0.29	-0.9
3,498,459	+		GFF3458	0.29	-3.2
3,498,459	+		GFF3458	0.29	-1.5
3,498,460	+		GFF3458	0.29	+0.8
3,498,463	+		GFF3458	0.30	+0.1
3,498,464	+		GFF3458	0.30	-2.2
3,498,468	+		GFF3458	0.30	-1.4
3,498,468	+		GFF3458	0.30	-1.8
3,498,468	+		GFF3458	0.30	-3.4
3,498,476	-		GFF3458	0.31	-2.4
3,498,513	-		GFF3458	0.34	-2.8
3,498,518	-		GFF3458	0.35	-2.8
3,498,523	-		GFF3458	0.35	-1.4
3,498,523	-		GFF3458	0.35	-1.7
3,498,553	+		GFF3458	0.38	-0.5
3,498,559	+		GFF3458	0.39	-2.6
3,498,559	+		GFF3458	0.39	-1.3
3,498,560	-		GFF3458	0.39	-3.0
3,498,572	-		GFF3458	0.40	-2.6
3,498,600	-		GFF3458	0.43	-2.7
3,498,603	-		GFF3458	0.43	-2.3
3,498,615	+		GFF3458	0.44	-1.3
3,498,623	+		GFF3458	0.45	-0.8
3,498,631	-		GFF3458	0.46	-1.6
3,498,632	+		GFF3458	0.46	-1.0
3,498,640	-		GFF3458	0.47	-0.2
3,498,640	-		GFF3458	0.47	-3.2
3,498,650	+		GFF3458	0.48	-1.2
3,498,658	-		GFF3458	0.48	-2.1
3,498,658	-		GFF3458	0.48	-0.8
3,498,658	-		GFF3458	0.48	-1.3
3,498,658	-		GFF3458	0.48	-2.0
3,498,670	+		GFF3458	0.49	-1.6
3,498,678	-		GFF3458	0.50	-3.0
3,498,696	+		GFF3458	0.52	-1.4
3,498,734	+		GFF3458	0.56	-1.5
3,498,736	+		GFF3458	0.56	-1.3
3,498,736	+		GFF3458	0.56	-1.3
3,498,736	+		GFF3458	0.56	+0.3
3,498,736	+		GFF3458	0.56	-0.7
3,498,736	+		GFF3458	0.56	-1.5
3,498,744	-		GFF3458	0.57	-1.7
3,498,744	-		GFF3458	0.57	-1.8
3,498,744	-		GFF3458	0.57	-0.4
3,498,744	-		GFF3458	0.57	+0.9
3,498,744	-		GFF3458	0.57	-2.5
3,498,753	+		GFF3458	0.57	-1.3
3,498,753	+		GFF3458	0.57	-1.4
3,498,753	+		GFF3458	0.57	+0.1
3,498,753	+		GFF3458	0.57	-2.0
3,498,753	+		GFF3458	0.57	-2.2
3,498,759	+		GFF3458	0.58	-0.7
3,498,767	-		GFF3458	0.59	-2.8
3,498,767	-		GFF3458	0.59	-2.1
3,498,778	-		GFF3458	0.60	-0.7
3,498,783	+		GFF3458	0.60	-2.0
3,498,783	+		GFF3458	0.60	+0.1
3,498,843	+		GFF3458	0.66	-2.0
3,498,843	+		GFF3458	0.66	-1.5
3,498,851	-		GFF3458	0.67	+0.1
3,498,873	+		GFF3458	0.69	-2.3
3,498,883	+		GFF3458	0.70	-1.4
3,498,900	+		GFF3458	0.71	-2.3
3,498,900	+		GFF3458	0.71	-0.9
3,498,900	+		GFF3458	0.71	-2.3
3,498,900	+		GFF3458	0.71	-2.0
3,498,902	+		GFF3458	0.72	-3.9
3,498,908	-		GFF3458	0.72	-0.3
3,498,908	-		GFF3458	0.72	-0.4
3,498,908	-		GFF3458	0.72	-2.1
3,498,908	-		GFF3458	0.72	-0.5
3,498,908	-		GFF3458	0.72	-1.4
3,498,913	+		GFF3458	0.73	-1.3
3,498,913	+		GFF3458	0.73	-2.8
3,498,920	+		GFF3458	0.73	-0.0
3,498,921	-		GFF3458	0.73	-1.8
3,498,928	-		GFF3458	0.74	-0.9
3,498,928	-		GFF3458	0.74	-1.7
3,498,987	-		GFF3458	0.80	-1.5
3,499,003	-		GFF3458	0.81	-4.0
3,499,003	-		GFF3458	0.81	-1.4
3,499,003	-		GFF3458	0.81	-1.4
3,499,005	+		GFF3458	0.82	-2.1
3,499,005	+		GFF3458	0.82	-1.9
3,499,018	-		GFF3458	0.83	-0.5
3,499,025	+		GFF3458	0.83	-1.9
3,499,030	+		GFF3458	0.84	-2.5