Strain Fitness in Sphingobium sp. HT1-2 around GFF3431

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,471,095	-		GFF3430	0.42	-0.9
3,471,097	-		GFF3430	0.42	-0.9
3,471,117	+		GFF3430	0.44	-1.8
3,471,124	+		GFF3430	0.44	+0.2
3,471,153	+		GFF3430	0.46	-0.4
3,471,206	+		GFF3430	0.49	-0.2
3,471,206	+		GFF3430	0.49	+1.3
3,471,219	+		GFF3430	0.50	+0.9
3,471,227	-		GFF3430	0.50	+0.7
3,471,247	-		GFF3430	0.51	+0.2
3,471,247	-		GFF3430	0.51	+0.4
3,471,263	-		GFF3430	0.52	+0.2
3,471,268	+		GFF3430	0.52	-0.2
3,471,287	+		GFF3430	0.53	-0.7
3,471,287	+		GFF3430	0.53	+0.4
3,471,295	-		GFF3430	0.54	+0.7
3,471,300	-		GFF3430	0.54	+0.7
3,471,311	-		GFF3430	0.55	-1.5
3,471,317	+		GFF3430	0.55	+1.1
3,471,317	+		GFF3430	0.55	-0.9
3,471,325	-		GFF3430	0.56	+0.5
3,471,325	-		GFF3430	0.56	-0.9
3,471,327	+		GFF3430	0.56	-1.8
3,471,331	-		GFF3430	0.56	-2.1
3,471,336	-		GFF3430	0.56	+0.3
3,471,349	-		GFF3430	0.57	+1.4
3,471,355	+		GFF3430	0.57	-2.3
3,471,360	+		GFF3430	0.58	+0.4
3,471,360	+		GFF3430	0.58	-2.5
3,471,360	+		GFF3430	0.58	+1.1
3,471,362	+		GFF3430	0.58	-1.6
3,471,363	-		GFF3430	0.58	-0.0
3,471,363	-		GFF3430	0.58	+0.8
3,471,363	-		GFF3430	0.58	+0.2
3,471,367	+		GFF3430	0.58	-0.4
3,471,367	+		GFF3430	0.58	+0.8
3,471,367	+		GFF3430	0.58	-1.1
3,471,367	+		GFF3430	0.58	-0.5
3,471,367	+		GFF3430	0.58	-0.1
3,471,367	+		GFF3430	0.58	-0.5
3,471,367	+		GFF3430	0.58	-2.6
3,471,367	+		GFF3430	0.58	+0.3
3,471,367	+		GFF3430	0.58	-0.0
3,471,367	+		GFF3430	0.58	+0.3
3,471,367	+		GFF3430	0.58	-0.2
3,471,367	+		GFF3430	0.58	+0.1
3,471,367	+		GFF3430	0.58	-0.3
3,471,367	+		GFF3430	0.58	-0.8
3,471,370	-		GFF3430	0.58	-1.1
3,471,372	+		GFF3430	0.58	-1.8
3,471,375	-		GFF3430	0.59	-0.7
3,471,375	-		GFF3430	0.59	-0.6
3,471,375	-		GFF3430	0.59	-0.5
3,471,375	-		GFF3430	0.59	+0.3
3,471,375	-		GFF3430	0.59	-1.1
3,471,375	-		GFF3430	0.59	-0.0
3,471,375	-		GFF3430	0.59	-0.3
3,471,375	-		GFF3430	0.59	+0.4
3,471,375	-		GFF3430	0.59	-1.4
3,471,375	-		GFF3430	0.59	-0.4
3,471,375	-		GFF3430	0.59	+0.5
3,471,375	-		GFF3430	0.59	-0.3
3,471,375	-		GFF3430	0.59	+0.2
3,471,375	-		GFF3430	0.59	-0.5
3,471,401	-		GFF3430	0.60	-2.2
3,471,409	-		GFF3430	0.61	-1.1
3,471,409	-		GFF3430	0.61	-0.2
3,471,446	-		GFF3430	0.63	-0.3
3,471,457	+		GFF3430	0.63	-0.1
3,471,457	+		GFF3430	0.63	+0.2
3,471,457	-		GFF3430	0.63	+1.3
3,471,459	-		GFF3430	0.63	-0.5
3,471,463	-		GFF3430	0.64	-0.1
3,471,465	-		GFF3430	0.64	-1.4
3,471,465	-		GFF3430	0.64	+0.4
3,471,466	-		GFF3430	0.64	+1.2
3,471,473	+		GFF3430	0.64	-0.1
3,471,482	+		GFF3430	0.65	-0.2
3,471,483	+		GFF3430	0.65	-0.9
3,471,490	-		GFF3430	0.65	-2.3
3,471,508	+		GFF3430	0.66	-0.7
3,471,508	+		GFF3430	0.66	-0.3
3,471,513	+		GFF3430	0.67	-0.4
3,471,515	+		GFF3430	0.67	-0.1
3,471,515	+		GFF3430	0.67	+0.7
3,471,516	-		GFF3430	0.67	-0.1
3,471,516	-		GFF3430	0.67	-0.1
3,471,516	-		GFF3430	0.67	-1.9
3,471,523	-		GFF3430	0.67	-0.6
3,471,526	+		GFF3430	0.67	+0.0
3,471,526	+		GFF3430	0.67	-0.5
3,471,526	+		GFF3430	0.67	+0.6
3,471,526	+		GFF3430	0.67	+0.1
3,471,526	+		GFF3430	0.67	+0.2
3,471,531	+		GFF3430	0.68	-0.6
3,471,534	-		GFF3430	0.68	+0.1
3,471,534	-		GFF3430	0.68	+0.5
3,471,534	-		GFF3430	0.68	+0.5
3,471,539	-		GFF3430	0.68	-1.0
3,471,539	-		GFF3430	0.68	-0.4
3,471,539	-		GFF3430	0.68	-1.6
3,471,539	-		GFF3430	0.68	-0.6
3,471,550	+		GFF3430	0.69	-0.3
3,471,550	+		GFF3430	0.69	-1.1
3,471,550	+		GFF3430	0.69	-1.1
3,471,558	-		GFF3430	0.69	-2.7
3,471,558	-		GFF3430	0.69	-0.9
3,471,578	+		GFF3430	0.70	+0.2
3,471,624	-		GFF3430	0.73	-0.2
3,471,706	+		GFF3430	0.78	-0.4
3,471,711	-		GFF3430	0.78	-0.5
3,471,732	+		GFF3430	0.79	-0.7
3,471,767	+		GFF3430	0.81	+0.3
3,471,768	+		GFF3430	0.81	+0.4
3,471,776	-		GFF3430	0.82	+0.7
3,471,778	+		GFF3430	0.82	+0.6
3,471,780	+		GFF3430	0.82	-0.5
3,471,787	+		GFF3430	0.82	-0.7
3,471,790	-		GFF3430	0.83	-1.6
3,471,813	+		GFF3430	0.84	+0.9
3,471,813	+		GFF3430	0.84	+0.9
3,471,813	+		GFF3430	0.84	+0.5
3,471,813	+		GFF3430	0.84	+0.5
3,471,821	-		GFF3430	0.84	+0.5
3,471,821	-		GFF3430	0.84	-0.3
3,471,826	-		GFF3430	0.85	-1.1
3,471,854	+		GFF3430	0.86	-0.5
3,471,854	+		GFF3430	0.86	-0.3
3,471,854	+		GFF3430	0.86	-1.4
3,471,854	+		GFF3430	0.86	+0.4
3,471,862	+		GFF3430	0.87	-0.9
3,471,862	+		GFF3430	0.87	+0.2
3,471,862	-		GFF3430	0.87	-0.7
3,471,862	-		GFF3430	0.87	-0.8
3,471,869	-		GFF3430	0.87	+0.7
3,471,877	-		GFF3430	0.88	-0.7
3,471,877	-		GFF3430	0.88	+0.2
3,471,879	+		GFF3430	0.88	+0.2
3,471,887	-		GFF3430	0.88	-0.7
3,471,891	+		GFF3430	0.88	-1.2
3,471,891	+		GFF3430	0.88	-0.5
3,471,891	+		GFF3430	0.88	+0.0
3,471,894	-		GFF3430	0.89	-0.5
3,471,899	-		GFF3430	0.89	+0.3
3,471,899	-		GFF3430	0.89	+0.2
3,471,899	-		GFF3430	0.89	+0.3
3,471,899	-		GFF3430	0.89	+0.1
3,471,899	-		GFF3430	0.89	+0.8
3,471,927	+				+0.2
3,471,927	+				+0.3
3,471,933	-				+0.7
3,471,935	-				+0.7
3,471,937	+				+0.5
3,471,956	+				+0.3
3,471,961	+				-0.2
3,471,994	+				-0.8
3,471,994	+				-1.3
3,472,008	-				-0.6
3,472,022	+				-0.5
3,472,022	+				-1.5
3,472,032	+				-0.8
3,472,062	-				-0.8
3,472,070	-				-0.1
3,472,071	+				-1.5
3,472,120	-				-0.5
3,472,123	-				+0.4
3,472,124	+				+0.9
3,472,132	-				+1.1
3,472,149	+				-1.2
3,472,150	+				+1.4
3,472,153	-				-0.2
3,472,153	-				-0.4
3,472,157	-				-1.9
3,472,158	-				-1.3
3,472,168	+				-1.0
3,472,176	-				-1.7
3,472,186	+				-0.3
3,472,200	-				-1.5
3,472,215	-				-1.1
3,472,311	+		GFF3431	0.16	-0.4
3,472,320	+		GFF3431	0.17	-1.1
3,472,360	+		GFF3431	0.19	+0.9
3,472,398	+		GFF3431	0.22	-0.3
3,472,398	+		GFF3431	0.22	-1.7
3,472,413	+		GFF3431	0.23	-0.1
3,472,416	-		GFF3431	0.23	+1.3
3,472,416	-		GFF3431	0.23	-0.4
3,472,418	+		GFF3431	0.24	-0.1
3,472,432	+		GFF3431	0.25	+0.0
3,472,452	+		GFF3431	0.26	+1.3
3,472,498	+		GFF3431	0.29	-0.9
3,472,498	+		GFF3431	0.29	+0.9
3,472,498	+		GFF3431	0.29	+0.1
3,472,502	+		GFF3431	0.30	-1.2
3,472,502	+		GFF3431	0.30	+0.4
3,472,504	-		GFF3431	0.30	-0.7
3,472,506	-		GFF3431	0.30	-0.2
3,472,506	-		GFF3431	0.30	-0.2
3,472,506	-		GFF3431	0.30	-1.0
3,472,506	-		GFF3431	0.30	+0.1
3,472,506	-		GFF3431	0.30	-0.3
3,472,506	-		GFF3431	0.30	+0.4
3,472,506	-		GFF3431	0.30	-2.3
3,472,506	-		GFF3431	0.30	-3.0
3,472,574	+		GFF3431	0.35	-1.4
3,472,592	+		GFF3431	0.36	+1.4
3,472,594	+		GFF3431	0.36	-0.9
3,472,602	-		GFF3431	0.37	-1.1
3,472,604	+		GFF3431	0.37	-1.9
3,472,604	+		GFF3431	0.37	-0.7
3,472,604	+		GFF3431	0.37	+0.5
3,472,604	+		GFF3431	0.37	-0.8
3,472,604	+		GFF3431	0.37	-1.5
3,472,604	+		GFF3431	0.37	+1.4
3,472,604	+		GFF3431	0.37	+1.0
3,472,604	+		GFF3431	0.37	+0.9
3,472,604	+		GFF3431	0.37	-0.9
3,472,604	+		GFF3431	0.37	-1.2
3,472,604	+		GFF3431	0.37	-0.2
3,472,612	-		GFF3431	0.37	+0.1
3,472,612	-		GFF3431	0.37	-0.0
3,472,612	-		GFF3431	0.37	+0.7
3,472,612	-		GFF3431	0.37	-1.5
3,472,612	-		GFF3431	0.37	+0.3
3,472,613	-		GFF3431	0.37	-0.3
3,472,614	+		GFF3431	0.38	-1.0
3,472,614	+		GFF3431	0.38	+0.3
3,472,621	+		GFF3431	0.38	-1.0
3,472,622	-		GFF3431	0.38	+0.8
3,472,639	+		GFF3431	0.39	+0.3
3,472,670	+		GFF3431	0.42	-1.3
3,472,670	+		GFF3431	0.42	+0.1
3,472,672	+		GFF3431	0.42	+0.0
3,472,672	+		GFF3431	0.42	+0.5
3,472,672	+		GFF3431	0.42	-2.5
3,472,680	-		GFF3431	0.42	-0.0
3,472,696	+		GFF3431	0.43	+0.2
3,472,699	-		GFF3431	0.44	+0.2
3,472,736	+		GFF3431	0.46	-1.6
3,472,736	+		GFF3431	0.46	-1.2
3,472,744	-		GFF3431	0.47	+0.2
3,472,748	+		GFF3431	0.47	+1.2
3,472,768	+		GFF3431	0.48	+1.0
3,472,768	+		GFF3431	0.48	-0.1
3,472,776	+		GFF3431	0.49	+0.4
3,472,776	-		GFF3431	0.49	+0.6
3,472,778	+		GFF3431	0.49	+0.4
3,472,778	-		GFF3431	0.49	+0.6
3,472,785	-		GFF3431	0.50	-1.6
3,472,806	+		GFF3431	0.51	+1.9
3,472,826	+		GFF3431	0.53	-0.7
3,472,826	+		GFF3431	0.53	+0.8
3,472,847	-		GFF3431	0.54	-0.3
3,472,872	-		GFF3431	0.56	+0.3
3,472,872	-		GFF3431	0.56	+0.1
3,472,879	+		GFF3431	0.56	+0.4
3,472,885	-		GFF3431	0.57	-1.0
3,472,891	-		GFF3431	0.57	-0.2
3,472,904	+		GFF3431	0.58	-0.8
3,472,904	+		GFF3431	0.58	-0.5
3,472,912	-		GFF3431	0.59	-0.1
3,472,944	+		GFF3431	0.61	-1.5
3,472,995	+		GFF3431	0.65	-0.6
3,472,995	+		GFF3431	0.65	+0.7
3,473,002	+		GFF3431	0.65	-0.8
3,473,002	+		GFF3431	0.65	-0.5
3,473,002	+		GFF3431	0.65	+0.7
3,473,003	-		GFF3431	0.65	+0.3
3,473,003	-		GFF3431	0.65	-2.1
3,473,007	+		GFF3431	0.65	+0.3
3,473,010	-		GFF3431	0.66	-1.2
3,473,010	-		GFF3431	0.66	-1.4
3,473,012	+		GFF3431	0.66	-0.4
3,473,015	-		GFF3431	0.66	+0.4
3,473,022	+		GFF3431	0.67	-2.5
3,473,023	+		GFF3431	0.67	+0.4
3,473,030	-		GFF3431	0.67	-0.4
3,473,031	-		GFF3431	0.67	+0.5
3,473,094	+		GFF3431	0.72	+0.7
3,473,099	+		GFF3431	0.72	-0.7
3,473,102	-		GFF3431	0.72	+1.2
3,473,137	-		GFF3431	0.75	-0.3
3,473,147	-		GFF3431	0.75	-0.2
3,473,161	-		GFF3431	0.76	+1.8
3,473,172	+		GFF3431	0.77	-0.1
3,473,172	+		GFF3431	0.77	-0.5
3,473,173	+		GFF3431	0.77	-2.6
3,473,181	-		GFF3431	0.78	+0.2
3,473,181	-		GFF3431	0.78	-1.9
3,473,205	+		GFF3431	0.80	+0.3
3,473,205	+		GFF3431	0.80	-2.0
3,473,213	-		GFF3431	0.80	+0.6
3,473,213	-		GFF3431	0.80	-1.5
3,473,229	+		GFF3431	0.81	+0.5
3,473,229	+		GFF3431	0.81	-0.8
3,473,230	+		GFF3431	0.81	-0.7
3,473,230	+		GFF3431	0.81	-1.6
3,473,237	-		GFF3431	0.82	-1.5
3,473,238	-		GFF3431	0.82	-0.3
3,473,238	-		GFF3431	0.82	-0.6
3,473,257	+		GFF3431	0.83	+0.5
3,473,267	+		GFF3431	0.84	-0.2
3,473,267	+		GFF3431	0.84	-0.2
3,473,267	+		GFF3431	0.84	-0.8
3,473,267	+		GFF3431	0.84	+0.6
3,473,267	+		GFF3431	0.84	+1.5
3,473,267	+		GFF3431	0.84	-1.0
3,473,275	-		GFF3431	0.85	-1.6
3,473,275	-		GFF3431	0.85	+0.2
3,473,275	-		GFF3431	0.85	+0.2
3,473,275	-		GFF3431	0.85	-0.1
3,473,275	-		GFF3431	0.85	-1.2
3,473,275	-		GFF3431	0.85	-1.3
3,473,275	-		GFF3431	0.85	+0.8
3,473,275	-		GFF3431	0.85	+0.6
3,473,275	-		GFF3431	0.85	+1.0
3,473,275	-		GFF3431	0.85	-1.0
3,473,275	-		GFF3431	0.85	+0.2
3,473,275	-		GFF3431	0.85	-2.1
3,473,285	+		GFF3431	0.85	-1.0
3,473,293	-		GFF3431	0.86	-0.3
3,473,299	+		GFF3431	0.86	-1.0
3,473,299	+		GFF3431	0.86	-0.7
3,473,299	-		GFF3431	0.86	+0.1
3,473,304	+		GFF3431	0.87	-1.7
3,473,307	-		GFF3431	0.87	-1.4
3,473,307	-		GFF3431	0.87	+1.5
3,473,312	-		GFF3431	0.87	-1.2
3,473,315	-		GFF3431	0.87	-0.6
3,473,336	+		GFF3431	0.89	-0.9
3,473,339	-		GFF3431	0.89	-1.1
3,473,340	+		GFF3431	0.89	-0.4
3,473,344	-		GFF3431	0.89	-0.2
3,473,344	-		GFF3431	0.89	+0.6
3,473,376	+				+0.5
3,473,376	+				+0.3
3,473,381	+				-0.7
3,473,381	+				-0.4
3,473,384	-				-0.3
3,473,384	-				+0.5
3,473,386	+				-1.4
3,473,389	-				-0.5
3,473,400	+				-1.0
3,473,416	+				-0.4
3,473,436	-				-1.4
3,473,492	+				-0.5
3,473,516	-				+0.8
3,473,521	-				+0.6
3,473,523	+				+0.6
3,473,523	+				-0.3
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