Strain Fitness in Sphingobium sp. HT1-2 around GFF3359

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,408,327	-		GFF3357	0.88	-0.1
3,408,349	+		GFF3357	0.89	-1.5
3,408,349	+		GFF3357	0.89	+0.5
3,408,351	+		GFF3357	0.89	-1.4
3,408,351	+		GFF3357	0.89	-2.6
3,408,351	+		GFF3357	0.89	-0.7
3,408,374	+		GFF3357	0.90	-0.6
3,408,374	+		GFF3357	0.90	+1.3
3,408,382	-				-1.7
3,408,389	+				-0.2
3,408,389	+				-1.5
3,408,389	+				-0.1
3,408,399	+				-0.2
3,408,411	+				+1.0
3,408,430	+				-0.7
3,408,437	+				+1.1
3,408,438	-				+0.7
3,408,439	+				+0.6
3,408,475	-				-2.9
3,408,480	-				-0.2
3,408,484	+				-1.6
3,408,485	-				+0.2
3,408,497	-				+0.2
3,408,503	+				-1.3
3,408,511	-				-2.9
3,408,549	+				-0.2
3,408,550	+				-2.1
3,408,572	-				+0.8
3,408,579	+				-0.5
3,408,611	-				-1.8
3,408,628	+				-0.6
3,408,628	-				-0.4
3,408,630	+				-0.9
3,408,634	+				-1.4
3,408,636	-				-0.0
3,408,657	+		GFF3358	0.11	-0.2
3,408,732	+		GFF3358	0.22	+0.4
3,408,744	-		GFF3358	0.24	-0.2
3,408,769	+		GFF3358	0.27	+0.4
3,408,769	+		GFF3358	0.27	-0.0
3,408,769	+		GFF3358	0.27	-0.3
3,408,777	-		GFF3358	0.29	-0.1
3,408,777	-		GFF3358	0.29	+0.6
3,408,777	-		GFF3358	0.29	-0.8
3,408,777	-		GFF3358	0.29	-1.5
3,408,779	+		GFF3358	0.29	-1.7
3,408,783	-		GFF3358	0.29	+0.8
3,408,787	-		GFF3358	0.30	+1.6
3,408,809	+		GFF3358	0.33	-0.2
3,408,817	+		GFF3358	0.35	-1.4
3,408,822	+		GFF3358	0.35	-0.5
3,408,825	-		GFF3358	0.36	-0.2
3,408,827	+		GFF3358	0.36	+1.3
3,408,830	-		GFF3358	0.36	-1.8
3,408,830	-		GFF3358	0.36	-1.6
3,408,835	-		GFF3358	0.37	-1.4
3,408,846	+		GFF3358	0.39	-0.5
3,408,846	+		GFF3358	0.39	-0.3
3,408,846	+		GFF3358	0.39	-1.5
3,408,849	-		GFF3358	0.39	+0.9
3,408,854	-		GFF3358	0.40	-1.9
3,408,854	-		GFF3358	0.40	-2.5
3,408,854	-		GFF3358	0.40	+1.1
3,408,854	-		GFF3358	0.40	-0.7
3,408,854	-		GFF3358	0.40	-2.4
3,408,864	-		GFF3358	0.42	-1.3
3,408,864	-		GFF3358	0.42	+0.6
3,408,887	+		GFF3358	0.45	-2.2
3,408,894	+		GFF3358	0.46	-1.3
3,408,894	+		GFF3358	0.46	-1.9
3,408,894	+		GFF3358	0.46	-0.2
3,408,894	+		GFF3358	0.46	-0.7
3,408,894	+		GFF3358	0.46	-1.5
3,408,894	+		GFF3358	0.46	-0.7
3,408,894	+		GFF3358	0.46	-1.6
3,408,894	+		GFF3358	0.46	+0.5
3,408,894	+		GFF3358	0.46	+1.1
3,408,894	+		GFF3358	0.46	-0.5
3,408,896	+		GFF3358	0.46	+1.3
3,408,899	+		GFF3358	0.47	-0.5
3,408,899	+		GFF3358	0.47	+0.6
3,408,899	+		GFF3358	0.47	-1.7
3,408,899	+		GFF3358	0.47	-0.5
3,408,902	-		GFF3358	0.47	-0.1
3,408,904	+		GFF3358	0.47	+0.0
3,408,907	-		GFF3358	0.48	-1.4
3,408,907	-		GFF3358	0.48	-0.0
3,408,907	-		GFF3358	0.48	-2.8
3,408,907	-		GFF3358	0.48	-0.2
3,408,907	-		GFF3358	0.48	+0.6
3,408,907	-		GFF3358	0.48	-0.5
3,408,907	-		GFF3358	0.48	-0.2
3,408,907	-		GFF3358	0.48	-0.3
3,408,929	-		GFF3358	0.51	+0.5
3,408,949	-		GFF3358	0.54	-0.3
3,409,011	+		GFF3358	0.63	+0.8
3,409,021	+		GFF3358	0.65	+0.1
3,409,021	+		GFF3358	0.65	+0.1
3,409,021	-		GFF3358	0.65	-1.9
3,409,068	+		GFF3358	0.72	-1.2
3,409,071	+		GFF3358	0.72	-0.0
3,409,071	+		GFF3358	0.72	-0.6
3,409,071	+		GFF3358	0.72	-0.0
3,409,079	-		GFF3358	0.74	+0.1
3,409,084	-		GFF3358	0.74	-1.7
3,409,084	-		GFF3358	0.74	-1.4
3,409,084	-		GFF3358	0.74	-2.5
3,409,101	+		GFF3358	0.77	-0.2
3,409,101	+		GFF3358	0.77	-0.8
3,409,106	-		GFF3358	0.78	+0.3
3,409,107	+		GFF3358	0.78	-0.5
3,409,107	+		GFF3358	0.78	-1.1
3,409,115	-		GFF3358	0.79	+1.2
3,409,138	-		GFF3358	0.82	-0.7
3,409,146	-		GFF3358	0.83	-2.3
3,409,149	+		GFF3358	0.84	-0.1
3,409,213	-				+1.0
3,409,223	-				-0.6
3,409,228	-				-0.9
3,409,228	-				+0.2
3,409,234	-				-0.1
3,409,234	-				-0.2
3,409,234	-				-1.5
3,409,252	+				-0.3
3,409,257	+				-1.1
3,409,257	+				+0.8
3,409,265	+				-1.2
3,409,265	-				-0.3
3,409,265	-				-0.3
3,409,265	-				+0.1
3,409,265	-				-0.1
3,409,267	+				-2.2
3,409,275	-				-1.7
3,409,283	-				+1.1
3,409,290	+				-0.3
3,409,295	+				-1.9
3,409,298	-				-0.7
3,409,303	-				-0.9
3,409,303	-				+0.3
3,409,315	+				-0.8
3,409,320	-				-0.5
3,409,361	-		GFF3359	0.12	-0.3
3,409,367	-		GFF3359	0.13	+0.2
3,409,381	+		GFF3359	0.15	+1.3
3,409,389	-		GFF3359	0.16	-0.4
3,409,391	-		GFF3359	0.16	+0.2
3,409,395	+		GFF3359	0.16	-0.8
3,409,395	+		GFF3359	0.16	-0.4
3,409,396	-		GFF3359	0.16	+0.8
3,409,403	-		GFF3359	0.17	+0.3
3,409,403	-		GFF3359	0.17	-1.5
3,409,453	-		GFF3359	0.23	+1.3
3,409,468	-		GFF3359	0.25	+0.3
3,409,473	-		GFF3359	0.25	-0.1
3,409,493	+		GFF3359	0.28	-0.1
3,409,493	+		GFF3359	0.28	+0.4
3,409,498	+		GFF3359	0.28	+0.6
3,409,498	+		GFF3359	0.28	-0.2
3,409,501	-		GFF3359	0.29	+1.6
3,409,514	+		GFF3359	0.30	-0.6
3,409,514	+		GFF3359	0.30	+1.2
3,409,522	-		GFF3359	0.31	-1.8
3,409,529	-		GFF3359	0.32	-0.5
3,409,541	+		GFF3359	0.33	-2.3
3,409,541	+		GFF3359	0.33	-1.7
3,409,541	+		GFF3359	0.33	-2.5
3,409,546	+		GFF3359	0.34	-0.2
3,409,549	-		GFF3359	0.34	+1.0
3,409,549	-		GFF3359	0.34	+0.6
3,409,557	+		GFF3359	0.35	-0.2
3,409,562	+		GFF3359	0.36	-0.2
3,409,565	-		GFF3359	0.36	-0.4
3,409,570	-		GFF3359	0.36	-0.5
3,409,583	-		GFF3359	0.38	+1.2
3,409,606	+		GFF3359	0.41	-1.4
3,409,654	+		GFF3359	0.46	-1.2
3,409,654	+		GFF3359	0.46	-1.7
3,409,656	-		GFF3359	0.46	-2.5
3,409,661	+		GFF3359	0.47	-0.6
3,409,662	-		GFF3359	0.47	-0.2
3,409,662	-		GFF3359	0.47	+0.2
3,409,662	-		GFF3359	0.47	-0.5
3,409,662	-		GFF3359	0.47	-0.3
3,409,669	-		GFF3359	0.48	-1.7
3,409,671	-		GFF3359	0.48	-0.4
3,409,682	+		GFF3359	0.49	-0.5
3,409,695	-		GFF3359	0.51	-0.4
3,409,695	-		GFF3359	0.51	-2.5
3,409,705	+		GFF3359	0.52	+0.1
3,409,705	+		GFF3359	0.52	-0.1
3,409,710	+		GFF3359	0.53	-1.1
3,409,710	+		GFF3359	0.53	+0.5
3,409,717	+		GFF3359	0.53	+1.6
3,409,718	-		GFF3359	0.53	-1.4
3,409,762	+		GFF3359	0.59	-1.5
3,409,762	+		GFF3359	0.59	-1.1
3,409,762	+		GFF3359	0.59	-1.7
3,409,785	+		GFF3359	0.61	+0.4
3,409,798	+		GFF3359	0.63	-0.4
3,409,806	-		GFF3359	0.64	-0.1
3,409,837	+		GFF3359	0.67	-1.1
3,409,837	+		GFF3359	0.67	-0.5
3,409,837	+		GFF3359	0.67	-1.9
3,409,837	+		GFF3359	0.67	-0.4
3,409,837	+		GFF3359	0.67	-0.0
3,409,837	+		GFF3359	0.67	-0.6
3,409,837	+		GFF3359	0.67	+0.4
3,409,845	-		GFF3359	0.68	-1.5
3,409,845	-		GFF3359	0.68	+0.4
3,409,845	-		GFF3359	0.68	-0.6
3,409,845	-		GFF3359	0.68	+0.5
3,409,845	-		GFF3359	0.68	+0.2
3,409,846	+		GFF3359	0.68	-2.8
3,409,846	+		GFF3359	0.68	-0.2
3,409,854	-		GFF3359	0.69	+0.1
3,409,854	-		GFF3359	0.69	+0.1
3,409,883	-		GFF3359	0.72	-2.0
3,409,885	+		GFF3359	0.73	-1.2
3,409,900	+		GFF3359	0.74	+0.1
3,409,908	-		GFF3359	0.75	-0.4
3,409,908	-		GFF3359	0.75	+1.1
3,409,916	+		GFF3359	0.76	-0.1
3,409,919	-		GFF3359	0.77	-0.8
3,409,935	+		GFF3359	0.78	+0.8
3,409,940	+		GFF3359	0.79	-1.7
3,409,944	-		GFF3359	0.79	-2.8
3,409,984	+		GFF3359	0.84	-1.0
3,409,984	+		GFF3359	0.84	+0.1
3,409,987	-		GFF3359	0.84	+0.7
3,409,987	-		GFF3359	0.84	+1.4
3,410,021	-		GFF3359	0.88	+1.0
3,410,030	+		GFF3359	0.89	+0.2
3,410,058	+				-0.1
3,410,066	-				-0.8
3,410,071	-				+0.2
3,410,085	+				+0.2
3,410,109	+				-1.2
3,410,111	+				-0.4
3,410,153	+				+0.5
3,410,163	-				-0.5
3,410,180	-		GFF3360	0.13	+0.2
3,410,191	-		GFF3360	0.15	-0.2
3,410,218	+		GFF3360	0.21	+0.5
3,410,218	+		GFF3360	0.21	-1.5
3,410,218	+		GFF3360	0.21	+0.2
3,410,222	+		GFF3360	0.21	-0.4
3,410,226	-		GFF3360	0.22	+1.6
3,410,226	-		GFF3360	0.22	+1.0
3,410,230	-		GFF3360	0.23	+0.8
3,410,241	-		GFF3360	0.25	-1.8
3,410,246	+		GFF3360	0.26	-0.5
3,410,246	+		GFF3360	0.26	-0.0
3,410,256	-		GFF3360	0.29	-1.6
3,410,264	-		GFF3360	0.30	-0.3
3,410,274	+		GFF3360	0.32	+0.5
3,410,293	+		GFF3360	0.36	-2.4
3,410,293	+		GFF3360	0.36	-1.0
3,410,293	+		GFF3360	0.36	+1.5
3,410,298	+		GFF3360	0.37	+0.6
3,410,298	+		GFF3360	0.37	-0.4
3,410,301	-		GFF3360	0.38	-0.3
3,410,301	-		GFF3360	0.38	+1.4
3,410,301	-		GFF3360	0.38	-0.3
3,410,301	-		GFF3360	0.38	+0.3
3,410,306	-		GFF3360	0.39	+1.3
3,410,306	-		GFF3360	0.39	-1.5
3,410,306	-		GFF3360	0.39	-1.1
3,410,310	-		GFF3360	0.40	-1.4
3,410,311	-		GFF3360	0.40	-1.6
3,410,311	-		GFF3360	0.40	-0.9
3,410,326	+		GFF3360	0.43	-0.9
3,410,330	+		GFF3360	0.44	-1.6
3,410,335	+		GFF3360	0.45	-1.8
3,410,335	+		GFF3360	0.45	-0.3
3,410,347	+		GFF3360	0.47	-0.6
3,410,348	-		GFF3360	0.48	-1.6
3,410,349	+		GFF3360	0.48	+0.2
3,410,353	+		GFF3360	0.49	-0.5
3,410,355	-		GFF3360	0.49	-0.9
3,410,358	+		GFF3360	0.50	+0.1
3,410,366	-		GFF3360	0.51	+0.5
3,410,376	+		GFF3360	0.54	-0.5
3,410,381	+		GFF3360	0.55	-1.1
3,410,387	-		GFF3360	0.56	+0.1
3,410,387	-		GFF3360	0.56	+0.1
3,410,389	-		GFF3360	0.56	+0.2
3,410,395	+		GFF3360	0.57	+0.8
3,410,395	-		GFF3360	0.57	-1.9
3,410,402	+		GFF3360	0.59	+0.1
3,410,405	-		GFF3360	0.60	-0.4
3,410,408	+		GFF3360	0.60	+1.3
3,410,413	+		GFF3360	0.61	+0.8
3,410,445	+		GFF3360	0.68	-0.7
3,410,461	-		GFF3360	0.71	+0.7
3,410,477	+		GFF3360	0.75	+0.5
3,410,478	+		GFF3360	0.75	+0.7
3,410,504	+		GFF3360	0.80	-2.3
3,410,510	-		GFF3360	0.81	-1.5
3,410,511	-		GFF3360	0.82	+0.7
3,410,511	-		GFF3360	0.82	-0.6
3,410,521	+		GFF3360	0.84	-0.1
3,410,521	+		GFF3360	0.84	+0.8
3,410,524	-		GFF3360	0.84	+0.3
3,410,529	-		GFF3360	0.85	+0.3
3,410,540	+		GFF3360	0.88	+0.3
3,410,548	+		GFF3360	0.89	-0.0
3,410,556	-				-0.5
3,410,583	+				-0.3
3,410,583	+				+0.7
3,410,584	-				-0.8
3,410,621	+				+0.3
3,410,648	-				+0.8
3,410,652	+				+0.5
3,410,660	-				-0.1
3,410,662	-				-0.1
3,410,664	+				-0.7
3,410,695	+				+0.6
3,410,695	+				-1.4
3,410,703	-				-1.4
3,410,703	-				+0.1
3,410,712	+				-1.4
3,410,723	-				-0.0
3,410,724	+				+0.6
3,410,729	+				-0.7
3,410,745	-				-1.9
3,410,774	-				-0.5
3,410,808	+				-0.9
3,410,808	+				+0.3
3,410,808	+				-0.4
3,410,808	+				+0.8
3,410,808	+				+0.7
3,410,808	+				+0.1
3,410,808	+				-0.3
3,410,808	+				+1.6
3,410,808	+				-1.4
3,410,808	+				-0.4
3,410,813	+				+1.3
3,410,816	-				+1.5
3,410,816	-				-0.3
3,410,816	-				-0.4
3,410,816	-				+0.3
3,410,816	-				+0.7
3,410,816	-				+0.6
3,410,816	-				+0.5
3,410,816	-				+0.2
3,410,816	-				-0.9
3,410,816	-				-0.3
3,410,816	-				+0.9
3,410,816	-				+0.3
3,410,816	-				-0.3
3,410,816	-				-1.3
3,410,816	-				-1.8
3,410,816	-				-0.6
3,410,816	-				-1.8
3,410,834	+				-1.2
3,410,847	+				-0.6
3,410,847	+				-1.8
3,410,855	-				-0.2
3,410,855	-				-0.5
3,410,860	+		GFF3361	0.10	-1.7
3,410,868	-		GFF3361	0.10	-0.9
3,410,874	-		GFF3361	0.11	-0.6
3,410,874	-		GFF3361	0.11	+0.1
3,410,914	+		GFF3361	0.12	+1.1
3,410,936	+		GFF3361	0.13	+0.2
3,410,939	+		GFF3361	0.13	-2.3
3,410,977	+		GFF3361	0.14	+0.1
3,410,979	-		GFF3361	0.15	-0.3
3,410,985	-		GFF3361	0.15	-0.5
3,410,985	-		GFF3361	0.15	+0.7
3,411,018	+		GFF3361	0.16	+0.7
3,411,018	+		GFF3361	0.16	+0.6
3,411,031	-		GFF3361	0.17	-1.0
3,411,042	-		GFF3361	0.17	-1.2
3,411,048	-		GFF3361	0.17	+0.4
3,411,048	-		GFF3361	0.17	-2.7
3,411,048	-		GFF3361	0.17	-0.2
3,411,048	-		GFF3361	0.17	-0.3
3,411,048	-		GFF3361	0.17	+1.6
3,411,061	-		GFF3361	0.18	-0.4
3,411,068	+		GFF3361	0.18	+1.3
3,411,078	+		GFF3361	0.18	+0.3
3,411,093	+		GFF3361	0.19	+0.1
3,411,100	-		GFF3361	0.19	-0.6
3,411,117	+		GFF3361	0.20	+1.6