Strain Fitness in Sphingobium sp. HT1-2 around GFF3346

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,394,971	+				+0.5
3,394,973	+				+0.7
3,394,974	+				-1.7
3,394,979	-				-0.6
3,394,981	-				-0.3
3,394,986	+				-2.6
3,394,993	-				-0.0
3,395,098	-		GFF3344	0.28	-0.8
3,395,100	+		GFF3344	0.29	-0.9
3,395,108	-		GFF3344	0.32	+0.6
3,395,114	+		GFF3344	0.34	+1.0
3,395,136	+		GFF3344	0.41	-1.1
3,395,147	+		GFF3344	0.45	+0.6
3,395,158	-		GFF3344	0.49	-0.5
3,395,175	-		GFF3344	0.55	+0.3
3,395,175	-		GFF3344	0.55	-1.1
3,395,197	+		GFF3344	0.62	-2.3
3,395,197	+		GFF3344	0.62	-0.4
3,395,197	+		GFF3344	0.62	+0.6
3,395,197	+		GFF3344	0.62	+0.2
3,395,197	+		GFF3344	0.62	-0.9
3,395,197	+		GFF3344	0.62	+0.5
3,395,197	+		GFF3344	0.62	-0.9
3,395,197	+		GFF3344	0.62	-0.3
3,395,197	+		GFF3344	0.62	+0.3
3,395,205	-		GFF3344	0.65	-0.8
3,395,205	-		GFF3344	0.65	-0.5
3,395,205	-		GFF3344	0.65	-0.0
3,395,205	-		GFF3344	0.65	+0.8
3,395,205	-		GFF3344	0.65	-0.5
3,395,205	-		GFF3344	0.65	+0.5
3,395,205	-		GFF3344	0.65	+0.3
3,395,205	-		GFF3344	0.65	-0.7
3,395,205	-		GFF3344	0.65	-0.1
3,395,215	+		GFF3344	0.69	-0.8
3,395,240	+		GFF3344	0.77	+0.5
3,395,240	+		GFF3344	0.77	-0.5
3,395,248	-		GFF3344	0.80	-2.3
3,395,251	+		GFF3344	0.81	-0.4
3,395,251	+		GFF3344	0.81	-1.3
3,395,251	+		GFF3344	0.81	+0.6
3,395,277	-				+0.7
3,395,300	+				-1.1
3,395,305	+				-0.3
3,395,305	+				-1.3
3,395,315	+				-0.4
3,395,317	+				-0.6
3,395,323	-				+0.4
3,395,323	-				-1.6
3,395,327	-				+0.1
3,395,337	+				-0.2
3,395,337	+				+1.0
3,395,345	+				-0.5
3,395,353	-				-1.5
3,395,360	-				-0.4
3,395,391	-		GFF3345	0.14	-0.2
3,395,391	-		GFF3345	0.14	+0.2
3,395,441	+		GFF3345	0.21	-1.0
3,395,441	+		GFF3345	0.21	+0.6
3,395,449	-		GFF3345	0.23	-0.1
3,395,471	+		GFF3345	0.26	-0.7
3,395,471	+		GFF3345	0.26	-0.3
3,395,472	+		GFF3345	0.26	-0.0
3,395,480	-		GFF3345	0.27	-1.9
3,395,480	-		GFF3345	0.27	+1.1
3,395,480	-		GFF3345	0.27	+0.5
3,395,484	-		GFF3345	0.28	-2.4
3,395,503	+		GFF3345	0.31	-1.2
3,395,520	+		GFF3345	0.33	+0.9
3,395,538	+		GFF3345	0.36	-0.1
3,395,544	+		GFF3345	0.37	-1.2
3,395,549	+		GFF3345	0.38	+0.7
3,395,552	-		GFF3345	0.38	+0.7
3,395,552	-		GFF3345	0.38	+0.8
3,395,552	-		GFF3345	0.38	-2.0
3,395,552	-		GFF3345	0.38	+0.6
3,395,557	-		GFF3345	0.39	-0.6
3,395,562	-		GFF3345	0.40	-1.7
3,395,562	-		GFF3345	0.40	+1.2
3,395,566	-		GFF3345	0.40	+0.2
3,395,573	+		GFF3345	0.41	-0.9
3,395,580	+		GFF3345	0.42	+0.6
3,395,583	-		GFF3345	0.43	+1.8
3,395,583	-		GFF3345	0.43	+0.6
3,395,588	-		GFF3345	0.44	-1.1
3,395,588	-		GFF3345	0.44	+0.9
3,395,588	-		GFF3345	0.44	-0.7
3,395,588	-		GFF3345	0.44	-2.5
3,395,588	-		GFF3345	0.44	-1.9
3,395,607	+		GFF3345	0.47	-0.4
3,395,617	+		GFF3345	0.48	-0.9
3,395,617	+		GFF3345	0.48	-1.6
3,395,617	+		GFF3345	0.48	-0.3
3,395,640	+		GFF3345	0.52	+0.1
3,395,640	+		GFF3345	0.52	-2.2
3,395,640	+		GFF3345	0.52	-0.7
3,395,641	+		GFF3345	0.52	-1.0
3,395,645	+		GFF3345	0.52	+1.5
3,395,648	-		GFF3345	0.53	+0.4
3,395,648	-		GFF3345	0.53	-0.8
3,395,648	-		GFF3345	0.53	+0.1
3,395,649	-		GFF3345	0.53	+1.0
3,395,667	-		GFF3345	0.56	-0.1
3,395,698	-		GFF3345	0.60	+0.8
3,395,698	-		GFF3345	0.60	+0.5
3,395,698	-		GFF3345	0.60	+0.9
3,395,700	-		GFF3345	0.61	-0.9
3,395,703	+		GFF3345	0.61	-0.6
3,395,719	+		GFF3345	0.64	-0.1
3,395,725	-		GFF3345	0.65	-0.8
3,395,727	+		GFF3345	0.65	-0.7
3,395,727	-		GFF3345	0.65	-1.4
3,395,727	-		GFF3345	0.65	-1.6
3,395,729	+		GFF3345	0.65	+0.7
3,395,729	+		GFF3345	0.65	-0.2
3,395,737	-		GFF3345	0.66	+0.4
3,395,737	-		GFF3345	0.66	+0.0
3,395,752	-		GFF3345	0.69	-0.9
3,395,782	+		GFF3345	0.73	-1.4
3,395,803	-		GFF3345	0.76	-1.1
3,395,836	-		GFF3345	0.81	-0.6
3,395,841	+		GFF3345	0.82	-0.2
3,395,873	-		GFF3345	0.87	+0.1
3,395,893	+				+0.4
3,395,911	+				-0.4
3,395,912	+				+0.9
3,395,934	+				-1.4
3,395,934	+				+0.3
3,395,942	-				+0.3
3,395,942	-				-1.2
3,395,947	-				-1.0
3,395,959	+				-0.5
3,395,985	+				-2.2
3,395,985	+				+0.6
3,395,988	-				+1.1
3,395,993	-				-0.6
3,395,993	-				-1.8
3,395,993	-				-0.5
3,395,997	-				-1.5
3,395,998	+				-0.5
3,396,018	+		GFF3346	0.14	-0.8
3,396,048	-		GFF3346	0.20	+0.3
3,396,091	+		GFF3346	0.29	-0.1
3,396,099	-		GFF3346	0.31	-0.4
3,396,105	+		GFF3346	0.32	-0.4
3,396,110	+		GFF3346	0.33	-0.5
3,396,118	-		GFF3346	0.35	+0.4
3,396,123	+		GFF3346	0.36	-1.1
3,396,153	+		GFF3346	0.43	+1.1
3,396,153	+		GFF3346	0.43	+0.1
3,396,153	+		GFF3346	0.43	-1.3
3,396,153	+		GFF3346	0.43	-0.6
3,396,153	+		GFF3346	0.43	+1.8
3,396,153	+		GFF3346	0.43	-1.7
3,396,158	+		GFF3346	0.44	-0.2
3,396,159	+		GFF3346	0.44	-0.3
3,396,161	-		GFF3346	0.44	-0.4
3,396,166	-		GFF3346	0.45	+1.3
3,396,166	-		GFF3346	0.45	+0.4
3,396,166	-		GFF3346	0.45	-1.1
3,396,167	-		GFF3346	0.46	+0.0
3,396,178	+		GFF3346	0.48	-1.1
3,396,178	+		GFF3346	0.48	-1.6
3,396,178	+		GFF3346	0.48	-1.6
3,396,178	+		GFF3346	0.48	+0.9
3,396,178	+		GFF3346	0.48	+1.2
3,396,178	+		GFF3346	0.48	-0.5
3,396,181	-		GFF3346	0.49	-0.9
3,396,186	-		GFF3346	0.50	-0.2
3,396,186	-		GFF3346	0.50	-0.3
3,396,186	-		GFF3346	0.50	-0.6
3,396,191	-		GFF3346	0.51	-0.3
3,396,200	+		GFF3346	0.53	-1.5
3,396,218	-		GFF3346	0.56	+0.8
3,396,232	-		GFF3346	0.59	-0.1
3,396,261	+		GFF3346	0.66	-0.0
3,396,271	+		GFF3346	0.68	-0.7
3,396,271	+		GFF3346	0.68	+0.2
3,396,271	+		GFF3346	0.68	-1.9
3,396,271	+		GFF3346	0.68	+0.8
3,396,271	+		GFF3346	0.68	-0.0
3,396,271	+		GFF3346	0.68	-1.9
3,396,271	+		GFF3346	0.68	-0.7
3,396,271	+		GFF3346	0.68	-1.0
3,396,271	+		GFF3346	0.68	-0.7
3,396,271	+		GFF3346	0.68	-0.0
3,396,271	+		GFF3346	0.68	-0.5
3,396,271	+		GFF3346	0.68	-0.2
3,396,274	-		GFF3346	0.68	-0.7
3,396,278	-		GFF3346	0.69	-3.0
3,396,279	-		GFF3346	0.69	+0.4
3,396,279	-		GFF3346	0.69	+0.4
3,396,279	-		GFF3346	0.69	-0.8
3,396,279	-		GFF3346	0.69	+0.6
3,396,313	+		GFF3346	0.77	+2.2
3,396,330	+		GFF3346	0.80	-1.7
3,396,340	-		GFF3346	0.82	-1.9
3,396,362	-		GFF3346	0.87	-1.9
3,396,367	-		GFF3346	0.88	+0.1
3,396,378	-				-2.7
3,396,403	+				-0.7
3,396,406	-				+0.8
3,396,411	-				+0.3
3,396,423	+				-1.4
3,396,446	+				-0.1
3,396,465	-				-2.3
3,396,470	+				+0.2
3,396,524	+				-0.4
3,396,533	-				+0.9
3,396,546	+				+0.0
3,396,554	+				+0.3
3,396,554	-				-1.3
3,396,564	+		GFF3347	0.11	-0.7
3,396,572	-		GFF3347	0.12	-1.3
3,396,586	+		GFF3347	0.15	-2.5
3,396,586	+		GFF3347	0.15	-0.2
3,396,594	-		GFF3347	0.16	-0.7
3,396,640	+		GFF3347	0.23	-0.2
3,396,653	-		GFF3347	0.25	+0.3
3,396,655	+		GFF3347	0.26	-0.3
3,396,659	+		GFF3347	0.26	-1.0
3,396,663	-		GFF3347	0.27	-1.6
3,396,676	+		GFF3347	0.29	-0.1
3,396,681	+		GFF3347	0.30	+0.6
3,396,689	+		GFF3347	0.31	+0.5
3,396,701	+		GFF3347	0.33	-0.7
3,396,718	-		GFF3347	0.36	-0.8
3,396,757	+		GFF3347	0.42	-2.0
3,396,775	-		GFF3347	0.45	+0.3
3,396,775	-		GFF3347	0.45	+1.2
3,396,785	-		GFF3347	0.46	-0.6
3,396,785	-		GFF3347	0.46	-0.2
3,396,827	+		GFF3347	0.53	-0.4
3,396,834	-		GFF3347	0.54	-2.2
3,396,835	-		GFF3347	0.54	-1.4
3,396,845	+		GFF3347	0.56	-0.8
3,396,850	+		GFF3347	0.57	-1.4
3,396,850	+		GFF3347	0.57	+1.2
3,396,853	-		GFF3347	0.57	+1.3
3,396,858	-		GFF3347	0.58	-0.2
3,396,858	-		GFF3347	0.58	+0.6
3,396,858	-		GFF3347	0.58	-1.3
3,396,864	+		GFF3347	0.59	+1.0
3,396,870	+		GFF3347	0.60	-2.4
3,396,885	+		GFF3347	0.62	-0.9
3,396,885	+		GFF3347	0.62	-0.9
3,396,887	+		GFF3347	0.63	+0.6
3,396,887	+		GFF3347	0.63	-0.6
3,396,887	+		GFF3347	0.63	+0.3
3,396,893	-		GFF3347	0.63	+0.8
3,396,897	+		GFF3347	0.64	-1.0
3,396,898	-		GFF3347	0.64	-1.8
3,396,910	-		GFF3347	0.66	-1.5
3,396,932	-		GFF3347	0.70	-0.5
3,396,945	-		GFF3347	0.72	+1.0
3,396,945	-		GFF3347	0.72	-2.1
3,396,945	-		GFF3347	0.72	-1.5
3,397,031	+		GFF3347	0.85	+0.5
3,397,035	+		GFF3347	0.86	-0.3
3,397,035	+		GFF3347	0.86	-1.4
3,397,037	+		GFF3347	0.86	-0.5
3,397,043	-		GFF3347	0.87	+0.9
3,397,050	+		GFF3347	0.89	+0.6
3,397,058	-		GFF3347	0.90	-1.4
3,397,058	-		GFF3347	0.90	+0.9
3,397,060	-				-1.1
3,397,065	-				-0.4
3,397,105	-				+0.6
3,397,105	-				+0.4
3,397,112	+				+0.8
3,397,118	-				+0.6
3,397,146	-				+0.6
3,397,152	+				+0.8
3,397,152	+				-0.3
3,397,157	+				-0.3
3,397,160	-				+0.2
3,397,162	+				+0.7
3,397,162	+				-0.8
3,397,162	+				+0.7
3,397,162	+				-0.1
3,397,162	+				-0.8
3,397,162	+				+0.5
3,397,162	+				-0.2
3,397,162	+				-1.4
3,397,165	-				-2.3
3,397,165	-				-0.9
3,397,170	-				-2.2
3,397,170	-				+0.7
3,397,170	-				-0.3
3,397,170	-				-1.5
3,397,170	-				-0.8
3,397,170	-				+0.6
3,397,177	-				-1.7
3,397,194	+				-0.1
3,397,202	-				+1.5
3,397,202	-				-0.4
3,397,203	-				+0.5
3,397,229	+				+0.8
3,397,230	+				-0.5
3,397,230	+				-2.0
3,397,230	+				+0.2
3,397,237	-		GFF3348	0.10	+0.4
3,397,238	-		GFF3348	0.11	+0.9
3,397,238	-		GFF3348	0.11	+0.0
3,397,238	-		GFF3348	0.11	-1.5
3,397,238	-		GFF3348	0.11	+1.0
3,397,238	-		GFF3348	0.11	-2.1
3,397,238	-		GFF3348	0.11	-0.6
3,397,238	-		GFF3348	0.11	+0.2
3,397,240	+		GFF3348	0.11	+0.7
3,397,240	+		GFF3348	0.11	-1.3
3,397,240	+		GFF3348	0.11	+0.8
3,397,240	+		GFF3348	0.11	-0.6
3,397,248	+		GFF3348	0.11	-1.1
3,397,248	-		GFF3348	0.11	+1.0
3,397,248	-		GFF3348	0.11	+0.1
3,397,248	-		GFF3348	0.11	+0.2
3,397,273	+		GFF3348	0.14	-1.9
3,397,303	-		GFF3348	0.16	-0.8
3,397,327	+		GFF3348	0.18	+0.4
3,397,327	+		GFF3348	0.18	-1.2
3,397,333	+		GFF3348	0.19	-1.3
3,397,334	+		GFF3348	0.19	+0.7
3,397,341	+		GFF3348	0.20	+0.4
3,397,341	+		GFF3348	0.20	-0.7
3,397,347	-		GFF3348	0.20	-0.3
3,397,349	-		GFF3348	0.20	+0.5
3,397,349	-		GFF3348	0.20	-0.5
3,397,349	-		GFF3348	0.20	-0.1
3,397,349	-		GFF3348	0.20	-0.3
3,397,349	-		GFF3348	0.20	+0.1
3,397,353	+		GFF3348	0.21	-1.0
3,397,361	+		GFF3348	0.21	+0.2
3,397,369	-		GFF3348	0.22	-0.3
3,397,372	+		GFF3348	0.22	+0.4
3,397,377	+		GFF3348	0.23	-1.5
3,397,383	+		GFF3348	0.23	+1.3
3,397,391	-		GFF3348	0.24	+0.1