Strain Fitness in Sphingobium sp. HT1-2 around GFF3329

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,381,526	+				+0.2
3,381,526	+				+0.5
3,381,551	+				+0.2
3,381,598	-				-2.0
3,381,618	-				-0.2
3,381,659	+				-1.4
3,381,868	+		GFF3328	0.25	+0.0
3,382,508	+				+0.4
3,382,508	+				-1.6
3,382,508	+				-0.5
3,382,508	+				+0.3
3,382,508	+				+0.8
3,382,516	-				+0.6
3,382,520	+				-0.7
3,382,521	+				-0.6
3,382,521	+				-0.4
3,382,528	-				-0.8
3,382,529	-				-2.2
3,382,534	-				-1.0
3,382,539	+				-2.1
3,382,539	+				-0.5
3,382,539	+				+0.2
3,382,539	+				-0.8
3,382,539	+				-1.8
3,382,539	+				+1.0
3,382,539	+				+0.4
3,382,539	+				-1.6
3,382,539	+				-1.2
3,382,539	+				-1.4
3,382,539	+				+1.3
3,382,547	-				+0.6
3,382,547	-				-0.7
3,382,547	-				+0.8
3,382,547	-				-2.1
3,382,550	+				-0.4
3,382,591	+				+0.5
3,382,596	-				+0.3
3,382,630	+		GFF3329	0.12	+0.9
3,382,635	+		GFF3329	0.12	-0.6
3,382,635	+		GFF3329	0.12	-1.0
3,382,638	-		GFF3329	0.13	-0.9
3,382,640	+		GFF3329	0.13	-0.2
3,382,640	+		GFF3329	0.13	-1.4
3,382,640	+		GFF3329	0.13	-1.3
3,382,640	+		GFF3329	0.13	+0.0
3,382,640	+		GFF3329	0.13	+0.2
3,382,640	+		GFF3329	0.13	+1.3
3,382,640	+		GFF3329	0.13	+0.2
3,382,643	-		GFF3329	0.13	-0.3
3,382,643	-		GFF3329	0.13	+0.7
3,382,648	-		GFF3329	0.14	-0.6
3,382,648	-		GFF3329	0.14	-0.1
3,382,664	+		GFF3329	0.16	+1.1
3,382,672	-		GFF3329	0.16	-0.8
3,382,694	-		GFF3329	0.19	-0.4
3,382,706	-		GFF3329	0.20	+1.0
3,382,716	-		GFF3329	0.21	+0.1
3,382,716	-		GFF3329	0.21	-2.2
3,382,716	-		GFF3329	0.21	-0.6
3,382,733	+		GFF3329	0.23	+0.8
3,382,733	+		GFF3329	0.23	-1.4
3,382,741	-		GFF3329	0.24	+0.2
3,382,752	+		GFF3329	0.25	-0.0
3,382,762	+		GFF3329	0.26	-0.0
3,382,762	+		GFF3329	0.26	-1.5
3,382,765	+		GFF3329	0.27	-0.1
3,382,770	-		GFF3329	0.27	+0.4
3,382,770	-		GFF3329	0.27	-0.7
3,382,773	+		GFF3329	0.28	-1.6
3,382,773	-		GFF3329	0.28	+0.4
3,382,773	-		GFF3329	0.28	+0.0
3,382,773	-		GFF3329	0.28	+0.4
3,382,779	-		GFF3329	0.28	-2.4
3,382,781	-		GFF3329	0.28	+0.5
3,382,781	-		GFF3329	0.28	-2.1
3,382,781	-		GFF3329	0.28	+1.5
3,382,803	-		GFF3329	0.31	+0.7
3,382,804	+		GFF3329	0.31	+0.9
3,382,812	-		GFF3329	0.32	-0.5
3,382,835	+		GFF3329	0.34	-1.1
3,382,843	-		GFF3329	0.35	+0.4
3,382,858	+		GFF3329	0.37	+1.4
3,382,858	+		GFF3329	0.37	-0.3
3,382,858	+		GFF3329	0.37	-0.2
3,382,866	-		GFF3329	0.38	-1.2
3,382,866	-		GFF3329	0.38	-1.5
3,382,879	+		GFF3329	0.39	-0.1
3,382,903	+		GFF3329	0.42	-0.1
3,382,903	-		GFF3329	0.42	+0.3
3,382,910	+		GFF3329	0.43	-0.0
3,382,910	+		GFF3329	0.43	-2.5
3,382,911	+		GFF3329	0.43	-0.1
3,382,911	+		GFF3329	0.43	+0.8
3,382,911	+		GFF3329	0.43	+0.3
3,382,911	+		GFF3329	0.43	+0.0
3,382,918	-		GFF3329	0.44	-1.4
3,382,918	-		GFF3329	0.44	-0.4
3,382,918	-		GFF3329	0.44	-0.4
3,382,919	-		GFF3329	0.44	-0.7
3,382,919	-		GFF3329	0.44	-1.3
3,382,919	-		GFF3329	0.44	-1.7
3,382,919	-		GFF3329	0.44	+0.2
3,382,932	+		GFF3329	0.45	-1.3
3,382,937	+		GFF3329	0.46	-1.4
3,383,029	+		GFF3329	0.56	+0.2
3,383,065	-		GFF3329	0.60	+0.6
3,383,065	-		GFF3329	0.60	-2.2
3,383,126	+		GFF3329	0.67	-1.3
3,383,128	-		GFF3329	0.67	+0.3
3,383,132	+		GFF3329	0.67	+0.3
3,383,134	-		GFF3329	0.67	+1.1
3,383,139	-		GFF3329	0.68	-0.3
3,383,149	-		GFF3329	0.69	-2.5
3,383,163	-		GFF3329	0.71	-0.4
3,383,174	-		GFF3329	0.72	-0.4
3,383,197	+		GFF3329	0.74	-0.7
3,383,197	+		GFF3329	0.74	+0.2
3,383,203	-		GFF3329	0.75	+1.6
3,383,205	-		GFF3329	0.75	+1.1
3,383,205	-		GFF3329	0.75	-0.9
3,383,213	-		GFF3329	0.76	-0.4
3,383,213	-		GFF3329	0.76	-1.5
3,383,215	+		GFF3329	0.76	-0.1
3,383,223	-		GFF3329	0.77	-0.6
3,383,248	+		GFF3329	0.80	+0.4
3,383,253	+		GFF3329	0.81	+0.1
3,383,253	+		GFF3329	0.81	-1.0
3,383,256	-		GFF3329	0.81	+0.6
3,383,260	+		GFF3329	0.81	-2.2
3,383,270	-		GFF3329	0.82	-2.1
3,383,272	+		GFF3329	0.83	-1.0
3,383,285	-		GFF3329	0.84	-1.0
3,383,292	+		GFF3329	0.85	+0.6
3,383,292	+		GFF3329	0.85	-0.4
3,383,320	-		GFF3329	0.88	+0.4
3,383,325	+		GFF3329	0.89	+0.9
3,383,326	-		GFF3329	0.89	-2.8
3,383,330	+		GFF3329	0.89	-1.6
3,383,331	+		GFF3329	0.89	-1.1
3,383,338	+				+1.1
3,383,338	+				-0.5
3,383,338	-				-0.4
3,383,346	-				-0.6
3,383,346	-				-1.5
3,383,348	-				+0.3
3,383,362	-				-1.0
3,383,377	+				-0.8
3,383,377	+				+1.0
3,383,377	+				+0.4
3,383,377	+				-0.9
3,383,377	+				-1.1
3,383,385	-				-1.5
3,383,385	-				-0.4
3,383,385	-				-0.1
3,383,385	-				+0.0
3,383,410	+				+0.9
3,383,413	-				+1.2
3,383,418	-				+0.8
3,383,425	+				-2.4
3,383,425	+				+1.4
3,383,435	+				+0.4
3,383,435	+				-0.1
3,383,444	+				-0.0
3,383,449	+				-0.3
3,383,449	+				-0.7
3,383,457	-				-0.8
3,383,457	-				-0.6
3,383,457	-				-0.5
3,383,487	+		GFF3330	0.12	-1.4
3,383,487	+		GFF3330	0.12	-1.1
3,383,487	+		GFF3330	0.12	+0.4
3,383,487	+		GFF3330	0.12	-0.1
3,383,487	+		GFF3330	0.12	-0.0
3,383,488	+		GFF3330	0.13	-1.0
3,383,488	+		GFF3330	0.13	-0.4
3,383,495	-		GFF3330	0.15	-0.8
3,383,495	-		GFF3330	0.15	+0.6
3,383,495	-		GFF3330	0.15	-1.5
3,383,495	-		GFF3330	0.15	-1.4
3,383,495	-		GFF3330	0.15	+0.1
3,383,495	-		GFF3330	0.15	-0.5
3,383,495	-		GFF3330	0.15	-0.2
3,383,495	-		GFF3330	0.15	-0.8
3,383,496	-		GFF3330	0.16	+0.5
3,383,496	-		GFF3330	0.16	-1.7
3,383,496	-		GFF3330	0.16	-0.1
3,383,503	-		GFF3330	0.18	+0.2
3,383,524	+		GFF3330	0.25	-0.7
3,383,524	+		GFF3330	0.25	+0.2
3,383,524	+		GFF3330	0.25	+0.6
3,383,527	-		GFF3330	0.26	+0.4
3,383,532	-		GFF3330	0.28	+1.5
3,383,532	-		GFF3330	0.28	-1.1
3,383,532	-		GFF3330	0.28	-0.0
3,383,553	+		GFF3330	0.35	-0.5
3,383,561	-		GFF3330	0.38	+0.2
3,383,561	-		GFF3330	0.38	+0.2
3,383,561	-		GFF3330	0.38	-0.4
3,383,590	+		GFF3330	0.48	+0.1
3,383,592	+		GFF3330	0.49	+1.0
3,383,606	-		GFF3330	0.54	-0.1
3,383,613	+		GFF3330	0.56	+0.8
3,383,613	+		GFF3330	0.56	-0.4
3,383,636	+		GFF3330	0.64	-1.8
3,383,642	-		GFF3330	0.66	-0.0
3,383,644	-		GFF3330	0.67	-0.2
3,383,654	-		GFF3330	0.70	+0.5
3,383,666	+		GFF3330	0.75	+1.3
3,383,666	+		GFF3330	0.75	+0.2
3,383,666	+		GFF3330	0.75	+0.3
3,383,673	+		GFF3330	0.77	-0.9
3,383,673	+		GFF3330	0.77	+0.5
3,383,673	+		GFF3330	0.77	-1.2
3,383,673	+		GFF3330	0.77	-2.2
3,383,673	+		GFF3330	0.77	+0.6
3,383,673	+		GFF3330	0.77	+0.6
3,383,673	+		GFF3330	0.77	-0.1
3,383,674	-		GFF3330	0.77	-0.6
3,383,674	-		GFF3330	0.77	-0.2
3,383,681	-		GFF3330	0.80	-1.1
3,383,681	-		GFF3330	0.80	-2.1
3,383,681	-		GFF3330	0.80	+0.2
3,383,711	+				+0.3
3,383,712	+				+1.5
3,383,719	+				+0.3
3,383,719	-				-0.6
3,383,720	+				-0.9
3,383,731	+				-0.4
3,383,734	-				-1.2
3,383,741	+				-0.2
3,383,749	-				-0.1
3,383,749	-				-1.3
3,383,749	-				-0.7
3,383,749	-				+0.3
3,383,754	-				+1.5
3,383,766	+				-1.0
3,383,776	+				-0.3
3,383,776	+				-0.5
3,383,776	+				+0.7
3,383,781	+				+2.1
3,383,789	-				-0.1
3,383,789	-				-0.3
3,383,789	-				+0.4
3,383,812	+				-0.7
3,383,849	+		GFF3331	0.11	-0.9
3,383,849	+		GFF3331	0.11	-0.5
3,383,849	+		GFF3331	0.11	-1.4
3,383,849	+		GFF3331	0.11	-0.3
3,383,849	+		GFF3331	0.11	+1.1
3,383,849	+		GFF3331	0.11	-1.3
3,383,849	+		GFF3331	0.11	-0.9
3,383,849	+		GFF3331	0.11	+1.2
3,383,849	+		GFF3331	0.11	-2.2
3,383,849	+		GFF3331	0.11	-0.8
3,383,849	+		GFF3331	0.11	-0.3
3,383,849	+		GFF3331	0.11	+1.0
3,383,849	+		GFF3331	0.11	-2.0
3,383,849	+		GFF3331	0.11	+0.7
3,383,849	+		GFF3331	0.11	-1.3
3,383,856	+		GFF3331	0.12	+1.2
3,383,856	+		GFF3331	0.12	+0.8
3,383,857	-		GFF3331	0.12	-1.0
3,383,857	-		GFF3331	0.12	-1.1
3,383,857	-		GFF3331	0.12	-0.3
3,383,857	-		GFF3331	0.12	-1.6
3,383,857	-		GFF3331	0.12	-0.3
3,383,857	-		GFF3331	0.12	+0.1
3,383,857	-		GFF3331	0.12	+0.3
3,383,857	-		GFF3331	0.12	+0.4
3,383,857	-		GFF3331	0.12	+0.1
3,383,859	+		GFF3331	0.12	-0.4
3,383,869	+		GFF3331	0.14	-0.1
3,383,869	+		GFF3331	0.14	-0.6
3,383,869	+		GFF3331	0.14	-1.1
3,383,869	+		GFF3331	0.14	+0.9
3,383,877	-		GFF3331	0.15	-0.2
3,383,877	-		GFF3331	0.15	-0.0
3,383,877	-		GFF3331	0.15	-0.2
3,383,877	-		GFF3331	0.15	+0.2
3,383,877	-		GFF3331	0.15	-1.6
3,383,895	+		GFF3331	0.18	+0.5
3,383,895	+		GFF3331	0.18	-2.1
3,383,895	+		GFF3331	0.18	-0.8
3,383,903	-		GFF3331	0.19	-1.4
3,383,905	-		GFF3331	0.20	-0.8
3,383,919	+		GFF3331	0.22	-0.6
3,383,919	+		GFF3331	0.22	-0.3
3,383,919	+		GFF3331	0.22	-0.5
3,383,927	-		GFF3331	0.23	-0.0
3,383,940	+		GFF3331	0.25	-0.6
3,383,950	+		GFF3331	0.27	-0.5
3,383,950	+		GFF3331	0.27	-0.2
3,383,952	-		GFF3331	0.27	+0.7
3,383,952	-		GFF3331	0.27	-1.3
3,383,958	-		GFF3331	0.28	+0.5
3,383,958	-		GFF3331	0.28	-1.6
3,383,958	-		GFF3331	0.28	+0.6
3,383,958	-		GFF3331	0.28	-0.0
3,383,958	-		GFF3331	0.28	-0.9
3,383,968	+		GFF3331	0.30	-0.5
3,384,024	+		GFF3331	0.39	-0.6
3,384,024	+		GFF3331	0.39	-0.7
3,384,024	+		GFF3331	0.39	-1.3
3,384,032	+		GFF3331	0.40	+0.3
3,384,032	+		GFF3331	0.40	-0.5
3,384,036	+		GFF3331	0.41	-0.0
3,384,041	-		GFF3331	0.42	-0.3
3,384,092	+		GFF3331	0.50	+0.0
3,384,092	+		GFF3331	0.50	+1.3
3,384,109	+		GFF3331	0.53	+1.2
3,384,109	+		GFF3331	0.53	+1.0
3,384,109	+		GFF3331	0.53	-0.5
3,384,139	+		GFF3331	0.57	+0.6
3,384,161	+		GFF3331	0.61	-1.3
3,384,195	+		GFF3331	0.67	-0.5
3,384,215	+		GFF3331	0.70	+0.1
3,384,215	+		GFF3331	0.70	+0.5
3,384,215	-		GFF3331	0.70	+0.4
3,384,223	-		GFF3331	0.71	-0.3
3,384,223	-		GFF3331	0.71	-1.3
3,384,230	+		GFF3331	0.72	-0.8
3,384,239	-		GFF3331	0.74	+1.1
3,384,250	+		GFF3331	0.75	+0.3
3,384,264	+		GFF3331	0.78	-1.8
3,384,265	-		GFF3331	0.78	+0.2
3,384,265	-		GFF3331	0.78	-0.0
3,384,307	-		GFF3331	0.85	+0.4
3,384,311	-		GFF3331	0.85	+0.3
3,384,331	+		GFF3331	0.89	-0.6
3,384,336	-		GFF3331	0.89	+0.2
3,384,363	+				-0.1
3,384,364	-				-2.0
3,384,377	+				+0.5
3,384,384	+				+0.8
3,384,385	-				+0.0
3,384,392	-				-1.3
3,384,395	+				-1.2
3,384,403	-				-0.2
3,384,405	-				-2.0