Strain Fitness in Sphingobium sp. HT1-2 around GFF3320

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,373,961	+		GFF3319	0.65	-1.1
3,373,961	+		GFF3319	0.65	+0.3
3,373,969	-		GFF3319	0.65	+0.3
3,373,969	-		GFF3319	0.65	+0.3
3,374,006	+		GFF3319	0.67	-1.6
3,374,009	-		GFF3319	0.67	-0.4
3,374,014	-		GFF3319	0.67	+0.6
3,374,038	+		GFF3319	0.68	+1.3
3,374,046	-		GFF3319	0.69	-1.7
3,374,046	-		GFF3319	0.69	+0.4
3,374,051	-		GFF3319	0.69	-1.1
3,374,075	-		GFF3319	0.70	-0.7
3,374,120	+		GFF3319	0.72	-0.6
3,374,128	-		GFF3319	0.72	-0.1
3,374,179	+		GFF3319	0.74	-2.5
3,374,179	+		GFF3319	0.74	+0.3
3,374,199	-		GFF3319	0.75	+0.2
3,374,226	+		GFF3319	0.76	+0.0
3,374,234	-		GFF3319	0.77	+0.4
3,374,234	-		GFF3319	0.77	+0.3
3,374,234	-		GFF3319	0.77	+0.8
3,374,234	-		GFF3319	0.77	-1.9
3,374,234	-		GFF3319	0.77	+0.3
3,374,244	-		GFF3319	0.77	+0.1
3,374,246	+		GFF3319	0.77	+1.3
3,374,254	-		GFF3319	0.77	-1.6
3,374,255	-		GFF3319	0.78	-0.0
3,374,335	+		GFF3319	0.81	-1.3
3,374,344	+		GFF3319	0.81	-1.4
3,374,351	+		GFF3319	0.82	-1.9
3,374,359	-		GFF3319	0.82	+0.0
3,374,383	-		GFF3319	0.83	-1.5
3,374,404	+		GFF3319	0.84	-1.6
3,374,406	+		GFF3319	0.84	-0.1
3,374,439	+		GFF3319	0.85	-0.9
3,374,439	+		GFF3319	0.85	+0.1
3,374,447	-		GFF3319	0.86	-0.1
3,374,461	+		GFF3319	0.86	-0.3
3,374,466	+		GFF3319	0.86	+0.6
3,374,466	+		GFF3319	0.86	-0.6
3,374,474	-		GFF3319	0.87	-0.8
3,374,483	+		GFF3319	0.87	-0.6
3,374,493	+		GFF3319	0.88	-1.9
3,374,493	+		GFF3319	0.88	+0.7
3,374,501	-		GFF3319	0.88	-1.1
3,374,507	-		GFF3319	0.88	+0.6
3,374,517	+		GFF3319	0.89	-2.1
3,374,525	-		GFF3319	0.89	-2.3
3,374,525	-		GFF3319	0.89	-0.3
3,374,536	-		GFF3319	0.89	-0.9
3,374,536	-		GFF3319	0.89	+0.4
3,374,567	+				+0.7
3,374,567	+				+0.2
3,374,575	-				-0.5
3,374,578	+				+0.1
3,374,578	+				-0.1
3,374,578	+				-1.6
3,374,578	+				+0.3
3,374,578	+				+0.4
3,374,578	+				-0.3
3,374,583	+				-1.2
3,374,585	-				-1.6
3,374,586	-				-1.6
3,374,586	-				+0.0
3,374,586	-				-0.7
3,374,586	-				+0.7
3,374,586	-				-1.0
3,374,596	-				-0.2
3,374,641	+				+0.4
3,374,674	+				+0.1
3,374,678	-				-0.6
3,374,693	+				+0.3
3,374,701	-				-0.6
3,374,701	-				-0.6
3,374,711	-				+0.2
3,374,727	+				-0.7
3,374,739	-				+0.2
3,374,739	-				-1.1
3,374,765	-				+0.2
3,374,770	+				-0.6
3,374,775	-				-0.4
3,374,779	-				-0.2
3,374,796	+				+0.0
3,374,807	+				-2.4
3,374,807	+				-0.5
3,374,816	+				-1.7
3,374,824	-				+0.1
3,374,833	+				+0.5
3,374,834	+				-1.7
3,374,834	+				-0.3
3,374,907	-				+0.5
3,374,955	+				-0.1
3,374,955	+				+0.4
3,374,955	+				+0.2
3,374,963	-				-1.6
3,374,963	-				+0.2
3,375,014	-				-0.6
3,375,034	-		GFF3320	0.12	-1.4
3,375,043	+		GFF3320	0.13	-0.8
3,375,079	+		GFF3320	0.19	-0.5
3,375,087	-		GFF3320	0.20	+0.6
3,375,091	+		GFF3320	0.21	-0.7
3,375,099	-		GFF3320	0.22	-0.3
3,375,104	+		GFF3320	0.23	+0.9
3,375,104	+		GFF3320	0.23	-2.1
3,375,112	-		GFF3320	0.24	-1.1
3,375,112	-		GFF3320	0.24	-0.6
3,375,132	+		GFF3320	0.28	+0.0
3,375,170	-		GFF3320	0.34	-2.4
3,375,183	+		GFF3320	0.36	+0.3
3,375,183	+		GFF3320	0.36	-1.5
3,375,183	+		GFF3320	0.36	+0.2
3,375,183	+		GFF3320	0.36	+0.3
3,375,191	-		GFF3320	0.37	-0.6
3,375,199	+		GFF3320	0.38	-1.5
3,375,199	+		GFF3320	0.38	+0.1
3,375,207	-		GFF3320	0.40	+0.1
3,375,207	-		GFF3320	0.40	-1.6
3,375,223	-		GFF3320	0.42	-1.4
3,375,230	+		GFF3320	0.43	-1.3
3,375,232	+		GFF3320	0.44	+0.9
3,375,271	+		GFF3320	0.50	+0.3
3,375,271	+		GFF3320	0.50	-0.6
3,375,273	+		GFF3320	0.50	+1.0
3,375,279	-		GFF3320	0.51	-0.7
3,375,279	-		GFF3320	0.51	-1.2
3,375,324	+		GFF3320	0.58	-0.7
3,375,328	-		GFF3320	0.59	-1.1
3,375,330	+		GFF3320	0.59	+1.1
3,375,347	+		GFF3320	0.62	-0.7
3,375,351	-		GFF3320	0.63	-0.3
3,375,391	+		GFF3320	0.69	-1.1
3,375,392	-		GFF3320	0.69	-0.6
3,375,410	-		GFF3320	0.72	-0.7
3,375,415	+		GFF3320	0.73	-0.0
3,375,436	+		GFF3320	0.76	-0.9
3,375,436	+		GFF3320	0.76	-3.1
3,375,445	-		GFF3320	0.78	-0.1
3,375,447	+		GFF3320	0.78	+0.9
3,375,447	+		GFF3320	0.78	-0.3
3,375,448	+		GFF3320	0.78	-0.2
3,375,448	+		GFF3320	0.78	+0.7
3,375,448	+		GFF3320	0.78	-1.9
3,375,448	+		GFF3320	0.78	-1.4
3,375,448	+		GFF3320	0.78	+0.2
3,375,448	+		GFF3320	0.78	-0.5
3,375,448	+		GFF3320	0.78	-0.3
3,375,448	+		GFF3320	0.78	-2.1
3,375,448	+		GFF3320	0.78	+0.7
3,375,448	+		GFF3320	0.78	-1.4
3,375,448	+		GFF3320	0.78	-0.1
3,375,448	+		GFF3320	0.78	+1.1
3,375,448	+		GFF3320	0.78	+0.7
3,375,448	+		GFF3320	0.78	-0.6
3,375,456	-		GFF3320	0.79	-0.2
3,375,456	-		GFF3320	0.79	+0.5
3,375,456	-		GFF3320	0.79	-0.0
3,375,456	-		GFF3320	0.79	+0.2
3,375,456	-		GFF3320	0.79	+0.4
3,375,456	-		GFF3320	0.79	+1.0
3,375,456	-		GFF3320	0.79	-0.3
3,375,456	-		GFF3320	0.79	+0.8
3,375,456	-		GFF3320	0.79	+0.6
3,375,456	-		GFF3320	0.79	-0.4
3,375,456	-		GFF3320	0.79	-0.4
3,375,470	+		GFF3320	0.81	-1.0
3,375,470	+		GFF3320	0.81	-1.2
3,375,480	+		GFF3320	0.83	+1.7
3,375,487	+		GFF3320	0.84	-0.3
3,375,492	+		GFF3320	0.85	+0.6
3,375,492	+		GFF3320	0.85	+0.6
3,375,500	-		GFF3320	0.86	+0.3
3,375,500	-		GFF3320	0.86	-0.5
3,375,500	-		GFF3320	0.86	+0.5
3,375,500	-		GFF3320	0.86	-0.1
3,375,500	-		GFF3320	0.86	+0.4
3,375,500	-		GFF3320	0.86	-0.1
3,375,500	-		GFF3320	0.86	-1.3
3,375,500	-		GFF3320	0.86	-0.8
3,375,500	-		GFF3320	0.86	+0.8
3,375,500	-		GFF3320	0.86	+0.7
3,375,500	-		GFF3320	0.86	-0.0
3,375,500	-		GFF3320	0.86	+0.8
3,375,500	-		GFF3320	0.86	+0.2
3,375,513	+		GFF3320	0.88	-0.6
3,375,523	+				+0.4
3,375,531	-				-2.3
3,375,594	-				-0.1
3,375,594	-				-1.9
3,375,594	-				+0.9
3,375,601	+				-1.4
3,375,616	+				-0.3
3,375,625	+				-1.3
3,375,626	-				-0.7
3,375,638	+				-1.4
3,375,641	+				-1.0
3,375,643	-				+0.0
3,375,703	+				-0.5
3,375,706	-				-0.6
3,375,743	-				-0.7
3,375,819	+		GFF3321	0.17	+1.4
3,375,819	+		GFF3321	0.17	+0.7
3,375,819	+		GFF3321	0.17	-0.9
3,375,819	+		GFF3321	0.17	+0.5
3,375,825	+		GFF3321	0.17	+0.4
3,375,827	-		GFF3321	0.18	-0.2
3,375,827	-		GFF3321	0.18	+0.1
3,375,827	-		GFF3321	0.18	-1.4
3,375,827	-		GFF3321	0.18	-1.7
3,375,827	-		GFF3321	0.18	-1.7
3,375,832	-		GFF3321	0.18	+0.4
3,375,833	-		GFF3321	0.18	+0.5
3,375,851	-		GFF3321	0.21	+0.2
3,375,856	-		GFF3321	0.21	-2.9
3,375,857	+		GFF3321	0.21	-1.5
3,375,867	+		GFF3321	0.23	-0.5
3,375,867	+		GFF3321	0.23	+1.0
3,375,867	+		GFF3321	0.23	+1.1
3,375,867	+		GFF3321	0.23	+0.4
3,375,875	+		GFF3321	0.24	+1.2
3,375,875	+		GFF3321	0.24	-1.8
3,375,875	-		GFF3321	0.24	-1.6
3,375,875	-		GFF3321	0.24	+0.2
3,375,883	-		GFF3321	0.25	+0.2
3,375,883	-		GFF3321	0.25	-0.6
3,375,893	-		GFF3321	0.26	-1.2
3,375,937	+		GFF3321	0.31	+1.2
3,375,983	-		GFF3321	0.37	+0.5
3,375,997	+		GFF3321	0.39	-1.7
3,375,997	+		GFF3321	0.39	+0.8
3,375,997	+		GFF3321	0.39	+0.2
3,375,997	+		GFF3321	0.39	+1.4
3,375,997	+		GFF3321	0.39	-0.8
3,375,997	+		GFF3321	0.39	-0.1
3,375,997	+		GFF3321	0.39	-0.6
3,375,999	+		GFF3321	0.39	-0.5
3,376,005	-		GFF3321	0.40	+0.1
3,376,005	-		GFF3321	0.40	-1.4
3,376,005	-		GFF3321	0.40	-0.9
3,376,005	-		GFF3321	0.40	+0.4
3,376,005	-		GFF3321	0.40	-1.0
3,376,005	-		GFF3321	0.40	+0.7
3,376,005	-		GFF3321	0.40	-1.1
3,376,005	-		GFF3321	0.40	+1.1
3,376,005	-		GFF3321	0.40	-2.6
3,376,005	-		GFF3321	0.40	-0.3
3,376,005	-		GFF3321	0.40	-1.2
3,376,005	-		GFF3321	0.40	-1.5
3,376,005	-		GFF3321	0.40	+0.3
3,376,005	-		GFF3321	0.40	-0.5
3,376,005	-		GFF3321	0.40	+0.2
3,376,005	-		GFF3321	0.40	-0.5
3,376,005	-		GFF3321	0.40	-0.1
3,376,005	-		GFF3321	0.40	-0.1
3,376,005	-		GFF3321	0.40	-1.7
3,376,005	-		GFF3321	0.40	-1.4
3,376,005	-		GFF3321	0.40	+0.0
3,376,005	-		GFF3321	0.40	-0.6
3,376,005	-		GFF3321	0.40	+0.3
3,376,011	+		GFF3321	0.41	-1.6
3,376,033	-		GFF3321	0.44	-1.9
3,376,061	+		GFF3321	0.47	-0.0
3,376,061	+		GFF3321	0.47	+0.8
3,376,061	+		GFF3321	0.47	+0.9
3,376,082	-		GFF3321	0.50	-0.3
3,376,086	+		GFF3321	0.50	-0.1
3,376,092	-		GFF3321	0.51	+1.1
3,376,113	+		GFF3321	0.54	-0.1
3,376,114	+		GFF3321	0.54	-0.1
3,376,173	+		GFF3321	0.61	+0.3
3,376,181	-		GFF3321	0.62	+1.3
3,376,194	+		GFF3321	0.64	+1.3
3,376,199	+		GFF3321	0.65	-0.0
3,376,199	+		GFF3321	0.65	-0.2
3,376,207	-		GFF3321	0.66	+0.5
3,376,209	+		GFF3321	0.66	-0.4
3,376,215	+		GFF3321	0.67	+0.2
3,376,217	-		GFF3321	0.67	-1.7
3,376,217	-		GFF3321	0.67	+0.3
3,376,217	-		GFF3321	0.67	-1.5
3,376,220	+		GFF3321	0.67	-0.4
3,376,220	+		GFF3321	0.67	+0.1
3,376,220	+		GFF3321	0.67	-0.5
3,376,228	-		GFF3321	0.68	-0.4
3,376,228	-		GFF3321	0.68	-1.0
3,376,229	+		GFF3321	0.68	-2.1
3,376,237	-		GFF3321	0.69	-1.1
3,376,262	+		GFF3321	0.72	-0.6
3,376,262	+		GFF3321	0.72	-0.2
3,376,266	+		GFF3321	0.73	-0.5
3,376,266	+		GFF3321	0.73	-1.9
3,376,266	+		GFF3321	0.73	+0.3
3,376,267	+		GFF3321	0.73	-2.3
3,376,274	-		GFF3321	0.74	-3.0
3,376,275	-		GFF3321	0.74	+0.2
3,376,296	+		GFF3321	0.77	-0.8
3,376,305	+		GFF3321	0.78	+0.6
3,376,305	+		GFF3321	0.78	-1.0
3,376,305	+		GFF3321	0.78	+0.8
3,376,305	+		GFF3321	0.78	-1.0
3,376,305	+		GFF3321	0.78	-1.5
3,376,306	+		GFF3321	0.78	-0.1
3,376,308	-		GFF3321	0.78	-2.1
3,376,313	-		GFF3321	0.79	+0.3
3,376,313	-		GFF3321	0.79	-2.8
3,376,313	-		GFF3321	0.79	+0.2
3,376,313	-		GFF3321	0.79	-0.5
3,376,313	-		GFF3321	0.79	-0.6
3,376,324	-		GFF3321	0.80	+0.2
3,376,336	+		GFF3321	0.82	+0.7
3,376,341	+		GFF3321	0.82	+0.1
3,376,346	+		GFF3321	0.83	-0.4
3,376,360	-		GFF3321	0.85	-0.2
3,376,360	-		GFF3321	0.85	+0.3
3,376,386	-		GFF3321	0.88	-1.5
3,376,391	-		GFF3321	0.89	-0.1
3,376,400	+				-2.2
3,376,400	+				-0.1
3,376,401	-				-0.6
3,376,403	-				-0.9
3,376,410	+				+0.2
3,376,410	+				+1.0
3,376,410	+				+0.4
3,376,410	+				-0.8
3,376,418	-				-1.8
3,376,424	-				-1.3
3,376,428	+				+0.5
3,376,428	+				-0.7
3,376,436	-				-1.8
3,376,486	-				-1.3
3,376,509	+				-2.2
3,376,509	+				-1.1
3,376,553	+				-1.2
3,376,566	-				-2.8