Strain Fitness in Sphingobium sp. HT1-2 around GFF3280

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,332,979	+		GFF3277	0.85	-2.3
3,332,989	+		GFF3277	0.86	-1.5
3,332,998	+		GFF3277	0.87	-0.4
3,333,011	-		GFF3277	0.88	-1.4
3,333,015	-		GFF3277	0.88	-1.5
3,333,051	+				-1.4
3,333,084	+				-1.3
3,333,084	+				-1.7
3,333,102	+				-1.5
3,333,102	+				-1.3
3,333,138	-				-2.1
3,333,164	-				-2.0
3,333,177	+				-1.5
3,333,177	+				-1.8
3,333,179	+				-1.5
3,333,184	-				-2.5
3,333,185	-				-2.6
3,333,203	+				-1.2
3,333,212	-				-0.6
3,333,218	-				-0.7
3,333,260	+		GFF3278	0.25	-1.2
3,333,260	+		GFF3278	0.25	-1.8
3,333,268	-		GFF3278	0.31	-0.6
3,333,351	+				+1.1
3,333,351	+				-0.5
3,333,359	-				+0.1
3,333,359	-				-0.5
3,333,364	-				-0.2
3,333,386	+				-1.7
3,333,394	-				-1.4
3,333,394	-				-1.2
3,333,405	-				-0.6
3,333,405	-				-0.7
3,333,428	+				+1.1
3,333,471	+				+0.1
3,333,472	+		GFF3279	0.10	+0.7
3,333,478	+		GFF3279	0.12	-0.1
3,333,479	-		GFF3279	0.12	-0.8
3,333,486	-		GFF3279	0.14	-1.4
3,333,486	-		GFF3279	0.14	+0.8
3,333,488	+		GFF3279	0.15	-2.7
3,333,496	-		GFF3279	0.17	-0.3
3,333,496	-		GFF3279	0.17	-0.4
3,333,541	+		GFF3279	0.31	-0.7
3,333,583	+		GFF3279	0.44	+0.7
3,333,583	+		GFF3279	0.44	+0.2
3,333,591	-		GFF3279	0.46	+0.2
3,333,591	-		GFF3279	0.46	-0.5
3,333,601	+		GFF3279	0.49	-0.0
3,333,609	-		GFF3279	0.51	+0.3
3,333,614	-		GFF3279	0.53	-0.1
3,333,619	-		GFF3279	0.54	-0.2
3,333,633	-		GFF3279	0.59	-1.6
3,333,648	-		GFF3279	0.63	+0.9
3,333,669	-		GFF3279	0.69	-0.5
3,333,669	-		GFF3279	0.69	+0.5
3,333,688	+		GFF3279	0.75	-0.9
3,333,705	+		GFF3279	0.80	-1.4
3,333,717	+		GFF3279	0.84	-0.5
3,333,717	+		GFF3279	0.84	-0.3
3,333,725	-		GFF3279	0.86	-0.3
3,333,725	-		GFF3279	0.86	-0.4
3,333,725	-		GFF3279	0.86	+0.2
3,333,725	-		GFF3279	0.86	+0.1
3,333,732	+		GFF3279	0.88	-0.3
3,333,759	+				-1.4
3,333,764	+				-1.6
3,333,769	+				-0.8
3,333,769	+				-1.6
3,333,772	-				+0.8
3,333,772	-				+0.6
3,333,777	-				+1.0
3,333,813	+				-0.1
3,333,813	+				-0.2
3,333,815	+				+1.0
3,333,815	+				-2.3
3,333,823	-				+0.1
3,333,828	-				+0.5
3,333,833	+				-0.3
3,333,833	+				-0.0
3,333,833	-				-0.4
3,333,845	+				+1.0
3,333,856	+				-1.0
3,333,864	+				-2.7
3,333,865	+				+0.4
3,333,893	+				-1.4
3,333,893	+				+0.4
3,333,894	-				+2.6
3,333,901	-				+2.0
3,333,901	-				+0.5
3,333,901	-				+0.2
3,333,901	-				-0.9
3,333,901	-				-0.6
3,333,933	+				-0.6
3,333,942	+				+1.3
3,333,968	+				-1.4
3,333,978	-				-0.0
3,333,986	+				-0.4
3,333,986	+				-1.5
3,333,986	+				+0.0
3,333,986	+				+0.9
3,333,991	+				+0.1
3,333,991	+				-0.9
3,333,994	-				-2.1
3,333,999	-				-0.6
3,333,999	-				-0.7
3,333,999	-				+0.2
3,334,012	+				-0.6
3,334,026	-				-1.4
3,334,096	+				-1.0
3,334,161	+		GFF3280	0.14	-0.2
3,334,162	+		GFF3280	0.14	-0.4
3,334,170	-		GFF3280	0.14	+0.1
3,334,174	-		GFF3280	0.15	-0.5
3,334,203	-		GFF3280	0.17	-0.3
3,334,225	+		GFF3280	0.18	-0.4
3,334,247	+		GFF3280	0.19	+0.3
3,334,249	+		GFF3280	0.20	-0.3
3,334,249	+		GFF3280	0.20	+0.3
3,334,255	-		GFF3280	0.20	-0.1
3,334,257	-		GFF3280	0.20	-1.5
3,334,257	-		GFF3280	0.20	-0.1
3,334,257	-		GFF3280	0.20	+0.4
3,334,285	-		GFF3280	0.22	+1.0
3,334,297	+		GFF3280	0.23	+1.3
3,334,297	+		GFF3280	0.23	+0.5
3,334,302	+		GFF3280	0.23	+0.3
3,334,302	+		GFF3280	0.23	-0.1
3,334,305	-		GFF3280	0.23	-0.4
3,334,305	-		GFF3280	0.23	+0.5
3,334,305	-		GFF3280	0.23	-0.3
3,334,305	-		GFF3280	0.23	+0.2
3,334,310	-		GFF3280	0.24	-0.2
3,334,310	-		GFF3280	0.24	-1.3
3,334,310	-		GFF3280	0.24	+0.3
3,334,328	+		GFF3280	0.25	+0.3
3,334,328	+		GFF3280	0.25	-0.7
3,334,328	+		GFF3280	0.25	+0.5
3,334,328	+		GFF3280	0.25	-1.7
3,334,328	+		GFF3280	0.25	-1.0
3,334,328	+		GFF3280	0.25	-0.0
3,334,335	-		GFF3280	0.25	+0.3
3,334,336	-		GFF3280	0.25	+1.2
3,334,336	-		GFF3280	0.25	+0.1
3,334,336	-		GFF3280	0.25	+0.4
3,334,336	-		GFF3280	0.25	-2.6
3,334,336	-		GFF3280	0.25	-0.1
3,334,336	-		GFF3280	0.25	-1.1
3,334,353	+		GFF3280	0.26	-1.6
3,334,360	+		GFF3280	0.27	+0.1
3,334,361	-		GFF3280	0.27	+0.6
3,334,362	+		GFF3280	0.27	+0.3
3,334,362	+		GFF3280	0.27	+0.2
3,334,367	+		GFF3280	0.27	+0.5
3,334,367	+		GFF3280	0.27	-0.1
3,334,367	+		GFF3280	0.27	+1.9
3,334,370	-		GFF3280	0.27	+1.2
3,334,375	-		GFF3280	0.28	+0.3
3,334,390	+		GFF3280	0.29	-0.6
3,334,390	+		GFF3280	0.29	-0.6
3,334,398	-		GFF3280	0.29	+0.1
3,334,400	+		GFF3280	0.29	+0.3
3,334,408	-		GFF3280	0.30	-2.0
3,334,408	-		GFF3280	0.30	+1.1
3,334,408	-		GFF3280	0.30	+0.8
3,334,418	+		GFF3280	0.31	-0.0
3,334,426	-		GFF3280	0.31	-0.1
3,334,426	-		GFF3280	0.31	-0.8
3,334,433	+		GFF3280	0.32	-0.1
3,334,433	+		GFF3280	0.32	-0.6
3,334,433	+		GFF3280	0.32	+0.3
3,334,433	+		GFF3280	0.32	+0.4
3,334,433	+		GFF3280	0.32	-0.1
3,334,441	-		GFF3280	0.32	-0.7
3,334,441	-		GFF3280	0.32	+1.3
3,334,441	-		GFF3280	0.32	+0.1
3,334,441	-		GFF3280	0.32	-2.6
3,334,441	-		GFF3280	0.32	+0.3
3,334,441	-		GFF3280	0.32	+0.2
3,334,441	-		GFF3280	0.32	-0.3
3,334,441	-		GFF3280	0.32	-0.2
3,334,441	-		GFF3280	0.32	+0.4
3,334,441	-		GFF3280	0.32	-1.4
3,334,442	-		GFF3280	0.32	-0.3
3,334,442	-		GFF3280	0.32	+0.6
3,334,457	+		GFF3280	0.33	-0.6
3,334,484	+		GFF3280	0.35	-0.9
3,334,492	-		GFF3280	0.35	-0.5
3,334,492	-		GFF3280	0.35	-2.1
3,334,492	-		GFF3280	0.35	-0.0
3,334,492	-		GFF3280	0.35	+0.6
3,334,499	-		GFF3280	0.36	+1.0
3,334,504	+		GFF3280	0.36	+1.1
3,334,504	+		GFF3280	0.36	+1.2
3,334,507	-		GFF3280	0.36	-0.6
3,334,512	-		GFF3280	0.37	-2.1
3,334,521	+		GFF3280	0.37	+0.9
3,334,521	+		GFF3280	0.37	-0.9
3,334,529	-		GFF3280	0.38	+0.6
3,334,529	-		GFF3280	0.38	+0.6
3,334,539	+		GFF3280	0.39	-0.3
3,334,547	-		GFF3280	0.39	-2.3
3,334,571	+		GFF3280	0.41	-0.1
3,334,576	+		GFF3280	0.41	-1.3
3,334,579	-		GFF3280	0.41	-0.0
3,334,579	-		GFF3280	0.41	+0.3
3,334,579	-		GFF3280	0.41	-1.5
3,334,579	-		GFF3280	0.41	-1.7
3,334,591	+		GFF3280	0.42	-1.1
3,334,608	-		GFF3280	0.43	+0.0
3,334,633	-		GFF3280	0.45	-3.4
3,334,662	+		GFF3280	0.47	-2.1
3,334,684	+		GFF3280	0.48	-0.7
3,334,684	+		GFF3280	0.48	-0.6
3,334,684	+		GFF3280	0.48	+0.8
3,334,684	+		GFF3280	0.48	-0.4
3,334,684	+		GFF3280	0.48	-0.9
3,334,684	+		GFF3280	0.48	-1.0
3,334,684	+		GFF3280	0.48	+0.1
3,334,692	-		GFF3280	0.49	-1.9
3,334,692	-		GFF3280	0.49	-1.8
3,334,692	-		GFF3280	0.49	-0.9
3,334,692	-		GFF3280	0.49	-0.5
3,334,692	-		GFF3280	0.49	-0.7
3,334,692	-		GFF3280	0.49	-1.3
3,334,692	-		GFF3280	0.49	-0.3
3,334,692	-		GFF3280	0.49	+0.7
3,334,692	-		GFF3280	0.49	+1.1
3,334,703	+		GFF3280	0.49	+0.2
3,334,703	+		GFF3280	0.49	-1.9
3,334,703	+		GFF3280	0.49	-0.4
3,334,703	+		GFF3280	0.49	-0.5
3,334,703	+		GFF3280	0.49	-0.3
3,334,703	+		GFF3280	0.49	-1.2
3,334,704	+		GFF3280	0.49	-0.5
3,334,711	-		GFF3280	0.50	+0.7
3,334,718	+		GFF3280	0.50	-2.5
3,334,726	-		GFF3280	0.51	-0.1
3,334,726	-		GFF3280	0.51	-2.3
3,334,726	-		GFF3280	0.51	-0.9
3,334,778	+		GFF3280	0.54	+1.3
3,334,782	-		GFF3280	0.54	+0.2
3,334,826	+		GFF3280	0.57	+0.1
3,334,826	+		GFF3280	0.57	-3.1
3,334,826	+		GFF3280	0.57	+1.1
3,334,826	+		GFF3280	0.57	-0.3
3,334,826	+		GFF3280	0.57	-0.0
3,334,828	+		GFF3280	0.57	-0.1
3,334,834	-		GFF3280	0.58	+0.2
3,334,836	-		GFF3280	0.58	-0.7
3,334,836	-		GFF3280	0.58	+0.6
3,334,868	+		GFF3280	0.60	-0.3
3,334,868	+		GFF3280	0.60	-0.4
3,334,876	+		GFF3280	0.61	-0.0
3,334,884	-		GFF3280	0.61	-0.5
3,334,904	+		GFF3280	0.62	-0.2
3,334,927	+		GFF3280	0.64	-0.6
3,334,943	+		GFF3280	0.65	-0.2
3,334,944	+		GFF3280	0.65	-0.8
3,334,944	+		GFF3280	0.65	-1.3
3,334,950	-		GFF3280	0.65	-1.2
3,334,952	-		GFF3280	0.66	-1.3
3,334,952	-		GFF3280	0.66	-1.0
3,334,952	-		GFF3280	0.66	-1.3
3,334,952	-		GFF3280	0.66	-0.7
3,334,957	-		GFF3280	0.66	-0.3
3,334,966	-		GFF3280	0.66	-1.9
3,334,991	-		GFF3280	0.68	-1.8
3,335,035	-		GFF3280	0.71	-0.7
3,335,068	+		GFF3280	0.73	+0.2
3,335,095	-		GFF3280	0.75	-1.6
3,335,101	-		GFF3280	0.75	+0.6
3,335,107	+		GFF3280	0.76	-0.4
3,335,107	+		GFF3280	0.76	+0.6
3,335,107	+		GFF3280	0.76	-0.3
3,335,115	-		GFF3280	0.76	+0.4
3,335,115	-		GFF3280	0.76	-1.4
3,335,115	-		GFF3280	0.76	-0.4
3,335,117	+		GFF3280	0.76	-0.1
3,335,117	+		GFF3280	0.76	+0.2
3,335,117	+		GFF3280	0.76	-1.8
3,335,120	-		GFF3280	0.77	-1.3
3,335,120	-		GFF3280	0.77	-0.2
3,335,125	-		GFF3280	0.77	-2.1
3,335,125	-		GFF3280	0.77	+0.4
3,335,125	-		GFF3280	0.77	-0.3
3,335,133	+		GFF3280	0.77	+1.9
3,335,133	+		GFF3280	0.77	-0.4
3,335,170	+		GFF3280	0.80	+0.3
3,335,222	+		GFF3280	0.83	+0.2
3,335,257	+		GFF3280	0.86	+0.2
3,335,265	+		GFF3280	0.86	-1.2
3,335,265	+		GFF3280	0.86	-1.6
3,335,265	+		GFF3280	0.86	+0.3
3,335,265	+		GFF3280	0.86	-2.0
3,335,265	+		GFF3280	0.86	-0.5
3,335,291	-		GFF3280	0.88	-1.4
3,335,309	+		GFF3280	0.89	+0.1
3,335,317	-		GFF3280	0.89	-0.2
3,335,319	+		GFF3280	0.90	-1.3
3,335,327	+				-1.4
3,335,353	-				+1.1
3,335,354	+				-1.8
3,335,354	+				-0.8
3,335,354	+				+0.4
3,335,355	+				+0.6
3,335,362	-				-0.9
3,335,362	-				-0.5
3,335,362	-				-0.8
3,335,362	-				+0.4
3,335,403	+				-1.8
3,335,406	-				+0.5
3,335,413	+				-1.1
3,335,421	-				+0.3
3,335,421	-				-0.8
3,335,425	+				+1.1
3,335,425	+				+1.7
3,335,426	-				-0.7
3,335,430	+				-0.9
3,335,430	+				-1.0
3,335,438	-				+0.0
3,335,438	-				-1.1
3,335,438	-				-1.0
3,335,454	-				-2.9
3,335,462	+				+0.6
3,335,462	+				+0.2
3,335,463	-				-0.5
3,335,470	-				+0.7
3,335,470	-				-0.3
3,335,470	-				-0.5
3,335,484	+				-0.9
3,335,486	-				-1.7
3,335,507	-				-0.2
3,335,514	+				-0.2
3,335,540	-		GFF3281	0.14	+0.8
3,335,541	-		GFF3281	0.14	+0.3
3,335,541	-		GFF3281	0.14	+0.7
3,335,543	-		GFF3281	0.15	-1.5
3,335,554	+		GFF3281	0.17	-1.7
3,335,565	+		GFF3281	0.20	+0.6
3,335,575	+		GFF3281	0.22	+0.2
3,335,593	+		GFF3281	0.26	-2.5
3,335,602	+		GFF3281	0.29	+0.6
3,335,605	-		GFF3281	0.29	-0.6
3,335,605	-		GFF3281	0.29	-0.2
3,335,613	+		GFF3281	0.31	-2.4
3,335,613	+		GFF3281	0.31	-2.1
3,335,618	+		GFF3281	0.32	-0.5
3,335,618	+		GFF3281	0.32	+1.2
3,335,618	+		GFF3281	0.32	+1.1
3,335,618	+		GFF3281	0.32	+0.6
3,335,626	-		GFF3281	0.34	-1.1
3,335,626	-		GFF3281	0.34	-0.7
3,335,626	-		GFF3281	0.34	-2.6
3,335,626	-		GFF3281	0.34	-0.1
3,335,646	-		GFF3281	0.39	-1.5
3,335,660	+		GFF3281	0.42	-0.2
3,335,661	-		GFF3281	0.43	-0.5
3,335,665	+		GFF3281	0.44	-1.2
3,335,673	-		GFF3281	0.45	+0.0
3,335,695	+		GFF3281	0.51	+1.0
3,335,715	-		GFF3281	0.55	-1.4
3,335,720	+		GFF3281	0.57	+0.7
3,335,726	-		GFF3281	0.58	+0.6
3,335,728	-		GFF3281	0.59	-0.2
3,335,738	+		GFF3281	0.61	+0.1
3,335,747	+		GFF3281	0.63	-0.7
3,335,758	-		GFF3281	0.66	-0.1
3,335,765	-		GFF3281	0.67	-0.1
3,335,774	-		GFF3281	0.70	-1.1
3,335,786	-		GFF3281	0.72	-2.5
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