Strain Fitness in Sphingobium sp. HT1-2 around GFF3231

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,284,886	+		GFF3229	0.46	-1.8
3,284,891	+		GFF3229	0.48	-0.4
3,284,891	+		GFF3229	0.48	-0.5
3,284,891	+		GFF3229	0.48	+0.3
3,284,894	-		GFF3229	0.49	-0.7
3,284,901	+		GFF3229	0.52	-0.1
3,284,901	+		GFF3229	0.52	+0.4
3,284,906	+		GFF3229	0.54	+0.7
3,284,909	-		GFF3229	0.55	+0.3
3,284,909	-		GFF3229	0.55	-0.1
3,284,909	-		GFF3229	0.55	-0.5
3,284,909	-		GFF3229	0.55	-0.3
3,284,926	+		GFF3229	0.61	+0.0
3,284,951	+		GFF3229	0.70	+0.1
3,284,964	+		GFF3229	0.74	-0.6
3,284,969	+		GFF3229	0.76	-1.6
3,284,977	+		GFF3229	0.79	-0.4
3,284,985	-		GFF3229	0.82	-0.3
3,284,993	+		GFF3229	0.84	+0.7
3,285,007	-		GFF3229	0.89	-1.2
3,285,007	-		GFF3229	0.89	+0.9
3,285,007	-		GFF3229	0.89	+0.3
3,285,013	+				-0.3
3,285,013	+				-1.9
3,285,013	+				+0.2
3,285,013	+				-1.4
3,285,021	-				-0.3
3,285,021	-				-1.5
3,285,021	-				+1.5
3,285,026	-				+0.1
3,285,036	+				+0.3
3,285,046	+				+1.3
3,285,046	+				+0.4
3,285,061	-				-0.1
3,285,061	-				+1.2
3,285,061	-				-1.6
3,285,061	-				+0.3
3,285,063	+				-0.7
3,285,071	-				-0.5
3,285,074	+				-0.5
3,285,087	+				+1.0
3,285,137	+				-0.1
3,285,177	+				+0.9
3,285,231	+				-1.6
3,285,294	+				+0.9
3,285,306	+				+0.4
3,285,306	+				-0.1
3,285,311	+				-0.3
3,285,311	+				-1.9
3,285,311	-				-1.0
3,285,314	-				-1.0
3,285,314	-				-0.1
3,285,350	+				+0.5
3,285,353	+				-1.3
3,285,353	+				-0.3
3,285,386	+				-0.1
3,285,396	+				-0.7
3,285,412	+				-1.4
3,285,412	+				+0.2
3,285,420	-				-1.0
3,285,420	-				-1.2
3,285,420	-				+0.3
3,285,427	-				-1.6
3,285,447	+				-0.4
3,285,461	-				-0.7
3,285,501	+				-0.6
3,285,510	+				-1.2
3,285,514	+				-0.4
3,285,518	-				-1.4
3,285,522	-				+0.2
3,285,536	-				-1.6
3,285,542	+				-0.0
3,285,545	-				-0.6
3,285,564	-				-0.6
3,285,566	+				-1.7
3,285,566	+				+1.0
3,285,566	+				-0.3
3,285,571	+				-1.6
3,285,574	-				+1.6
3,285,576	+				+0.3
3,285,576	+				-1.0
3,285,576	+				+0.2
3,285,576	+				-0.8
3,285,576	+				-1.8
3,285,576	+				+0.4
3,285,576	+				-0.1
3,285,576	+				-1.4
3,285,576	+				+1.3
3,285,576	+				-1.0
3,285,576	+				-2.0
3,285,576	+				-0.9
3,285,576	+				-0.7
3,285,576	+				-0.6
3,285,576	+				+0.3
3,285,579	-				+0.4
3,285,584	-				-1.5
3,285,584	-				-0.4
3,285,584	-				+0.8
3,285,584	-				-1.1
3,285,584	-				+0.6
3,285,584	-				-1.1
3,285,584	-				-1.5
3,285,584	-				-0.0
3,285,584	-				+1.2
3,285,584	-				+0.1
3,285,584	-				-2.0
3,285,587	+				+0.6
3,285,602	-				+0.2
3,285,602	-				+0.4
3,285,616	-				-0.2
3,285,616	-				+0.6
3,285,628	+		GFF3230	0.10	+0.1
3,285,630	+		GFF3230	0.11	+0.1
3,285,636	-		GFF3230	0.14	-0.2
3,285,636	-		GFF3230	0.14	-1.4
3,285,636	-		GFF3230	0.14	-2.4
3,285,636	-		GFF3230	0.14	+0.5
3,285,642	+		GFF3230	0.16	-1.3
3,285,653	-		GFF3230	0.21	+2.3
3,285,655	+		GFF3230	0.22	-0.8
3,285,660	+		GFF3230	0.24	+0.2
3,285,668	-		GFF3230	0.28	-2.3
3,285,700	+		GFF3230	0.42	-2.0
3,285,700	+		GFF3230	0.42	-0.6
3,285,714	-		GFF3230	0.48	-1.0
3,285,716	+		GFF3230	0.49	-0.3
3,285,718	-		GFF3230	0.50	+0.1
3,285,732	-		GFF3230	0.56	-0.4
3,285,734	+		GFF3230	0.57	+0.4
3,285,756	-		GFF3230	0.66	+0.1
3,285,763	+		GFF3230	0.69	-1.7
3,285,763	+		GFF3230	0.69	-0.5
3,285,776	-		GFF3230	0.75	-1.6
3,285,779	-		GFF3230	0.76	-1.6
3,285,781	-		GFF3230	0.77	-0.7
3,285,844	-				+0.2
3,285,854	+				-1.6
3,285,862	-				+0.1
3,285,872	-				-2.4
3,285,888	-				-0.3
3,285,890	-				-1.6
3,285,892	-				-0.1
3,285,892	-				-0.1
3,285,903	+				-0.5
3,285,927	+				-0.2
3,285,939	-				-0.2
3,285,947	-				+0.3
3,285,948	+				-1.4
3,285,956	-				-1.6
3,285,961	+				+0.8
3,285,967	-		GFF3231	0.11	+0.5
3,285,973	+		GFF3231	0.11	-0.8
3,285,973	+		GFF3231	0.11	+0.4
3,285,981	-		GFF3231	0.12	+0.9
3,285,981	-		GFF3231	0.12	-0.7
3,285,981	-		GFF3231	0.12	+0.1
3,285,981	-		GFF3231	0.12	-0.1
3,285,988	+		GFF3231	0.13	+0.8
3,285,996	-		GFF3231	0.14	-0.3
3,286,008	+		GFF3231	0.16	+1.1
3,286,008	+		GFF3231	0.16	-0.3
3,286,008	+		GFF3231	0.16	-0.7
3,286,008	+		GFF3231	0.16	+0.1
3,286,008	+		GFF3231	0.16	-2.6
3,286,008	+		GFF3231	0.16	-1.4
3,286,008	+		GFF3231	0.16	-1.6
3,286,008	+		GFF3231	0.16	+0.3
3,286,008	+		GFF3231	0.16	-0.7
3,286,008	+		GFF3231	0.16	+0.1
3,286,008	+		GFF3231	0.16	+0.0
3,286,008	+		GFF3231	0.16	+0.7
3,286,008	+		GFF3231	0.16	-0.8
3,286,009	+		GFF3231	0.16	-0.1
3,286,009	+		GFF3231	0.16	+0.3
3,286,009	+		GFF3231	0.16	-0.7
3,286,009	+		GFF3231	0.16	-0.6
3,286,009	+		GFF3231	0.16	-0.8
3,286,016	-		GFF3231	0.16	+0.5
3,286,016	-		GFF3231	0.16	-2.3
3,286,016	-		GFF3231	0.16	-0.5
3,286,016	-		GFF3231	0.16	-0.7
3,286,016	-		GFF3231	0.16	+1.0
3,286,017	-		GFF3231	0.17	-1.4
3,286,017	-		GFF3231	0.17	+1.0
3,286,017	-		GFF3231	0.17	-2.1
3,286,017	-		GFF3231	0.17	-0.3
3,286,027	-		GFF3231	0.18	-0.1
3,286,035	-		GFF3231	0.19	+0.2
3,286,048	-		GFF3231	0.20	+0.6
3,286,050	+		GFF3231	0.21	-0.1
3,286,050	+		GFF3231	0.21	-0.5
3,286,050	+		GFF3231	0.21	-1.3
3,286,050	+		GFF3231	0.21	+0.8
3,286,051	+		GFF3231	0.21	-0.6
3,286,051	+		GFF3231	0.21	-1.5
3,286,051	+		GFF3231	0.21	-1.9
3,286,058	-		GFF3231	0.22	+0.6
3,286,058	-		GFF3231	0.22	+0.9
3,286,058	-		GFF3231	0.22	+0.2
3,286,078	+		GFF3231	0.24	-1.1
3,286,081	+		GFF3231	0.24	+0.4
3,286,095	+		GFF3231	0.26	-1.3
3,286,103	-		GFF3231	0.27	-0.1
3,286,113	+		GFF3231	0.28	+0.0
3,286,116	-		GFF3231	0.29	+1.0
3,286,121	-		GFF3231	0.29	+0.4
3,286,132	+		GFF3231	0.31	+0.8
3,286,140	-		GFF3231	0.32	-0.7
3,286,153	-		GFF3231	0.33	-1.4
3,286,165	+		GFF3231	0.35	+1.0
3,286,165	+		GFF3231	0.35	+0.2
3,286,165	+		GFF3231	0.35	-1.1
3,286,165	+		GFF3231	0.35	+2.1
3,286,167	+		GFF3231	0.35	+1.3
3,286,167	+		GFF3231	0.35	-0.6
3,286,173	-		GFF3231	0.36	-2.1
3,286,175	-		GFF3231	0.36	-2.0
3,286,206	+		GFF3231	0.40	-0.4
3,286,209	-		GFF3231	0.40	+1.1
3,286,211	+		GFF3231	0.40	-0.5
3,286,212	+		GFF3231	0.40	+0.7
3,286,212	+		GFF3231	0.40	+1.1
3,286,217	+		GFF3231	0.41	+0.9
3,286,217	+		GFF3231	0.41	-2.4
3,286,217	+		GFF3231	0.41	-0.3
3,286,217	+		GFF3231	0.41	-1.5
3,286,217	+		GFF3231	0.41	+1.1
3,286,219	-		GFF3231	0.41	-0.7
3,286,219	-		GFF3231	0.41	+1.7
3,286,219	-		GFF3231	0.41	+0.3
3,286,219	-		GFF3231	0.41	+0.3
3,286,225	-		GFF3231	0.42	-0.6
3,286,225	-		GFF3231	0.42	-1.2
3,286,225	-		GFF3231	0.42	+0.3
3,286,225	-		GFF3231	0.42	-1.1
3,286,233	-		GFF3231	0.43	+0.2
3,286,236	+		GFF3231	0.43	+0.3
3,286,236	+		GFF3231	0.43	-0.8
3,286,236	+		GFF3231	0.43	-1.8
3,286,236	+		GFF3231	0.43	-0.5
3,286,236	+		GFF3231	0.43	-1.0
3,286,244	-		GFF3231	0.44	+0.8
3,286,246	+		GFF3231	0.44	+1.0
3,286,246	+		GFF3231	0.44	-0.1
3,286,246	+		GFF3231	0.44	-0.3
3,286,281	+		GFF3231	0.49	+0.8
3,286,289	-		GFF3231	0.50	-0.8
3,286,289	-		GFF3231	0.50	-1.4
3,286,297	+		GFF3231	0.51	-0.8
3,286,302	+		GFF3231	0.51	-1.5
3,286,307	+		GFF3231	0.52	+0.7
3,286,307	+		GFF3231	0.52	-0.0
3,286,312	+		GFF3231	0.52	-2.1
3,286,312	+		GFF3231	0.52	-1.4
3,286,312	+		GFF3231	0.52	+0.1
3,286,312	+		GFF3231	0.52	+1.3
3,286,315	-		GFF3231	0.53	-2.0
3,286,320	-		GFF3231	0.53	+1.2
3,286,329	-		GFF3231	0.54	+1.2
3,286,339	+		GFF3231	0.56	+2.1
3,286,339	+		GFF3231	0.56	+0.6
3,286,339	+		GFF3231	0.56	-0.5
3,286,342	+		GFF3231	0.56	+0.4
3,286,347	-		GFF3231	0.57	+0.4
3,286,347	-		GFF3231	0.57	-0.3
3,286,348	+		GFF3231	0.57	-2.1
3,286,348	+		GFF3231	0.57	-0.3
3,286,349	-		GFF3231	0.57	-0.6
3,286,356	-		GFF3231	0.58	-0.0
3,286,356	-		GFF3231	0.58	-0.5
3,286,356	-		GFF3231	0.58	+0.5
3,286,361	-		GFF3231	0.58	-1.8
3,286,376	+		GFF3231	0.60	-0.0
3,286,384	-		GFF3231	0.61	+0.3
3,286,390	+		GFF3231	0.62	+0.4
3,286,391	+		GFF3231	0.62	+0.3
3,286,395	+		GFF3231	0.62	-0.4
3,286,395	+		GFF3231	0.62	-0.1
3,286,400	+		GFF3231	0.63	-0.5
3,286,400	+		GFF3231	0.63	-0.1
3,286,403	-		GFF3231	0.63	+0.9
3,286,405	+		GFF3231	0.64	+0.3
3,286,405	+		GFF3231	0.64	+0.1
3,286,405	+		GFF3231	0.64	+1.6
3,286,405	+		GFF3231	0.64	-0.7
3,286,405	+		GFF3231	0.64	+1.2
3,286,413	-		GFF3231	0.65	-1.0
3,286,413	-		GFF3231	0.65	+0.2
3,286,417	+		GFF3231	0.65	-0.5
3,286,417	+		GFF3231	0.65	+1.1
3,286,419	+		GFF3231	0.65	+0.1
3,286,420	-		GFF3231	0.65	+0.1
3,286,426	+		GFF3231	0.66	+0.7
3,286,426	+		GFF3231	0.66	-0.3
3,286,426	+		GFF3231	0.66	-0.5
3,286,436	+		GFF3231	0.67	+0.9
3,286,441	+		GFF3231	0.68	+0.7
3,286,441	+		GFF3231	0.68	-0.1
3,286,441	+		GFF3231	0.68	-1.3
3,286,441	+		GFF3231	0.68	+0.4
3,286,441	+		GFF3231	0.68	-0.7
3,286,449	-		GFF3231	0.69	+1.1
3,286,449	-		GFF3231	0.69	-0.8
3,286,449	-		GFF3231	0.69	-0.4
3,286,460	+		GFF3231	0.70	-0.5
3,286,460	+		GFF3231	0.70	-0.1
3,286,460	+		GFF3231	0.70	-0.6
3,286,460	-		GFF3231	0.70	+1.2
3,286,480	-		GFF3231	0.73	-0.4
3,286,510	+		GFF3231	0.76	-0.2
3,286,518	+		GFF3231	0.77	+0.4
3,286,530	+		GFF3231	0.79	-0.2
3,286,538	-		GFF3231	0.80	-0.7
3,286,538	-		GFF3231	0.80	+0.8
3,286,538	-		GFF3231	0.80	-1.0
3,286,538	-		GFF3231	0.80	-0.3
3,286,568	-		GFF3231	0.83	+0.4
3,286,579	+		GFF3231	0.85	-0.8
3,286,579	+		GFF3231	0.85	-0.3
3,286,591	-		GFF3231	0.86	-0.6
3,286,601	+		GFF3231	0.87	-1.1
3,286,611	+		GFF3231	0.89	-1.7
3,286,614	+		GFF3231	0.89	-1.9
3,286,622	-				+0.9
3,286,622	-				-0.2
3,286,653	-				-0.2
3,286,655	+				-0.4
3,286,655	+				+0.8
3,286,658	-				-2.1
3,286,663	-				+0.6
3,286,663	-				+1.3
3,286,704	-				+0.3
3,286,713	+				+0.5
3,286,773	-				-0.0
3,286,773	-				-0.3
3,286,775	+				-0.1
3,286,779	+				+0.2
3,286,779	+				-0.4
3,286,779	+				-0.8
3,286,779	+				+0.3
3,286,787	-				-0.5
3,286,788	-				-0.0
3,286,789	-				+0.1
3,286,799	+				-0.1
3,286,804	+				+0.8
3,286,804	+				+1.1
3,286,804	+				-0.0
3,286,804	+				+0.5
3,286,806	+				-0.7
3,286,806	+				-0.3
3,286,806	+				+0.0
3,286,806	+				+0.2
3,286,806	+				+0.1
3,286,806	+				+0.3
3,286,806	+				-0.3
3,286,806	+				-0.6
3,286,807	-				+0.5
3,286,812	+				+0.7
3,286,812	-				+1.1
3,286,812	-				-1.5
3,286,812	-				+1.3
3,286,812	-				-0.4
3,286,812	-				+0.4
3,286,812	-				+0.0
3,286,812	-				+0.0
3,286,814	-				-1.0
3,286,814	-				-0.3
3,286,814	-				-1.9
3,286,814	-				-0.1
3,286,814	-				-0.4
3,286,814	-				+0.3
3,286,814	-				+0.2
3,286,820	-				+1.8
3,286,830	-				-2.4
3,286,840	+				-0.8
3,286,840	+				+1.8
3,286,840	+				+0.8
3,286,840	+				-2.0
3,286,840	+				+0.3
3,286,840	-				-1.1
3,286,848	-				-0.0
3,286,860	+				-2.6
3,286,868	-				-1.2
3,286,869	+				+1.4
3,286,876	+				-0.2
3,286,876	+				-0.2
3,286,876	+				+1.0
3,286,877	-				-0.5
3,286,877	-				-0.1
3,286,884	-				+1.1
3,286,884	-				+0.8
3,286,884	-				-1.6
3,286,884	-				-0.2
3,286,893	-				-1.4
3,286,902	+				-1.9
3,286,904	-				-0.3
3,286,907	+				-0.4
3,286,910	-				+0.5
3,286,917	-				+0.5
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