Strain Fitness in Sphingobium sp. HT1-2 around GFF3170

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,230,559	-		GFF3168	0.49	-0.4
3,230,566	-		GFF3168	0.49	-0.3
3,230,594	+		GFF3168	0.52	-0.2
3,230,602	-		GFF3168	0.52	-1.9
3,230,608	-		GFF3168	0.53	-0.8
3,230,608	-		GFF3168	0.53	+0.6
3,230,660	+		GFF3168	0.57	-0.9
3,230,668	-		GFF3168	0.58	-0.1
3,230,673	-		GFF3168	0.58	-0.4
3,230,678	-		GFF3168	0.59	+0.4
3,230,706	-		GFF3168	0.61	+1.0
3,230,708	+		GFF3168	0.61	-1.8
3,230,724	-		GFF3168	0.63	-0.2
3,230,742	+		GFF3168	0.64	-0.2
3,230,750	-		GFF3168	0.65	-1.4
3,230,753	+		GFF3168	0.65	-2.1
3,230,755	+		GFF3168	0.65	+0.4
3,230,755	+		GFF3168	0.65	-0.6
3,230,755	+		GFF3168	0.65	-0.8
3,230,760	-		GFF3168	0.66	-1.9
3,230,761	-		GFF3168	0.66	-0.2
3,230,761	-		GFF3168	0.66	+0.5
3,230,762	-		GFF3168	0.66	+0.4
3,230,767	+		GFF3168	0.66	-0.6
3,230,767	+		GFF3168	0.66	-1.3
3,230,775	-		GFF3168	0.67	-0.4
3,230,775	-		GFF3168	0.67	+0.6
3,230,785	-		GFF3168	0.68	-0.8
3,230,785	-		GFF3168	0.68	-1.3
3,230,808	-		GFF3168	0.70	+1.1
3,230,824	+		GFF3168	0.71	+0.9
3,230,861	+		GFF3168	0.74	-0.6
3,230,861	+		GFF3168	0.74	+0.6
3,230,869	+		GFF3168	0.75	-1.8
3,230,869	+		GFF3168	0.75	-1.9
3,230,869	+		GFF3168	0.75	-1.6
3,230,869	-		GFF3168	0.75	-0.0
3,230,869	-		GFF3168	0.75	-1.8
3,230,877	-		GFF3168	0.76	+1.2
3,230,899	-		GFF3168	0.77	-0.1
3,230,911	+		GFF3168	0.78	-0.8
3,230,924	+		GFF3168	0.80	-1.7
3,230,930	-		GFF3168	0.80	+0.7
3,230,938	+		GFF3168	0.81	+0.2
3,230,943	+		GFF3168	0.81	+0.2
3,230,943	+		GFF3168	0.81	-0.0
3,230,946	-		GFF3168	0.81	-0.7
3,230,946	-		GFF3168	0.81	+0.2
3,230,946	-		GFF3168	0.81	-1.6
3,230,946	-		GFF3168	0.81	-1.6
3,230,946	-		GFF3168	0.81	+0.9
3,230,946	-		GFF3168	0.81	-0.2
3,230,965	+		GFF3168	0.83	-1.5
3,230,973	-		GFF3168	0.84	-1.6
3,230,979	+		GFF3168	0.84	-2.1
3,231,008	+		GFF3168	0.87	-0.1
3,231,009	+		GFF3168	0.87	-0.2
3,231,017	-		GFF3168	0.87	+0.2
3,231,039	-		GFF3168	0.89	+0.5
3,231,161	+				-1.6
3,231,161	+				-0.6
3,231,161	+				+0.8
3,231,164	-				+0.2
3,231,166	+				-1.6
3,231,168	+				-2.0
3,231,168	+				+0.6
3,231,169	-				-1.0
3,231,169	-				-2.4
3,231,176	-				-0.1
3,231,184	-				-0.2
3,231,227	-		GFF3169	0.20	-0.5
3,231,252	+		GFF3169	0.27	+0.5
3,231,264	+		GFF3169	0.30	+0.2
3,231,275	-		GFF3169	0.33	-0.6
3,231,275	-		GFF3169	0.33	-0.2
3,231,282	+		GFF3169	0.35	-0.0
3,231,282	+		GFF3169	0.35	+0.1
3,231,283	+		GFF3169	0.35	-2.6
3,231,290	-		GFF3169	0.37	+0.4
3,231,290	-		GFF3169	0.37	+0.7
3,231,291	-		GFF3169	0.37	-1.5
3,231,297	-		GFF3169	0.39	+0.6
3,231,355	+		GFF3169	0.53	-0.1
3,231,360	+		GFF3169	0.55	+0.5
3,231,365	+		GFF3169	0.56	-1.7
3,231,382	+		GFF3169	0.60	-0.6
3,231,382	+		GFF3169	0.60	+1.2
3,231,390	-		GFF3169	0.63	-0.1
3,231,416	+		GFF3169	0.69	-0.9
3,231,416	+		GFF3169	0.69	-0.3
3,231,416	+		GFF3169	0.69	-1.1
3,231,416	+		GFF3169	0.69	-0.2
3,231,424	-		GFF3169	0.71	+0.9
3,231,426	+		GFF3169	0.72	-1.7
3,231,434	-		GFF3169	0.74	-0.4
3,231,459	-		GFF3169	0.80	+1.6
3,231,466	+		GFF3169	0.82	+0.4
3,231,466	+		GFF3169	0.82	-0.9
3,231,495	-		GFF3169	0.90	+1.9
3,231,508	+				-0.0
3,231,508	-				-0.4
3,231,522	-				-0.6
3,231,527	-				-0.6
3,231,535	+				+0.5
3,231,537	-				-0.3
3,231,538	-				-1.1
3,231,540	+				+0.4
3,231,540	+				+0.0
3,231,540	+				-1.1
3,231,545	+				-0.5
3,231,548	-				+0.8
3,231,550	-				+0.1
3,231,550	-				-0.9
3,231,561	+				-0.3
3,231,574	-				-0.4
3,231,591	+				-0.7
3,231,591	+				+0.4
3,231,596	+				+0.4
3,231,599	-				-0.4
3,231,599	-				+0.8
3,231,599	-				+1.0
3,231,599	-				-0.1
3,231,599	-				-0.8
3,231,599	-				-0.1
3,231,599	-				-0.9
3,231,601	+				-0.9
3,231,601	+				+0.4
3,231,601	+				-0.7
3,231,601	+				-0.8
3,231,601	+				-0.9
3,231,604	-				-1.7
3,231,604	-				-1.0
3,231,609	-				+0.2
3,231,609	-				-0.5
3,231,609	-				-1.8
3,231,614	-				+0.6
3,231,616	+				+1.0
3,231,616	+				-0.5
3,231,616	+				-1.8
3,231,624	-				-1.4
3,231,624	-				+0.9
3,231,638	+				-0.8
3,231,649	+				-2.1
3,231,649	+				-0.4
3,231,649	+				+1.4
3,231,694	-		GFF3170	0.10	-0.5
3,231,711	+		GFF3170	0.11	-0.3
3,231,713	-		GFF3170	0.12	+0.6
3,231,715	+		GFF3170	0.12	+0.4
3,231,723	-		GFF3170	0.12	+1.1
3,231,723	-		GFF3170	0.12	-0.7
3,231,723	-		GFF3170	0.12	+0.2
3,231,729	-		GFF3170	0.13	-1.5
3,231,740	-		GFF3170	0.13	+0.5
3,231,742	-		GFF3170	0.13	-0.9
3,231,747	+		GFF3170	0.14	+1.5
3,231,754	+		GFF3170	0.14	-0.0
3,231,755	-		GFF3170	0.14	+0.4
3,231,764	+		GFF3170	0.15	+0.7
3,231,764	+		GFF3170	0.15	-0.5
3,231,764	+		GFF3170	0.15	+0.7
3,231,764	+		GFF3170	0.15	-2.1
3,231,767	-		GFF3170	0.15	-0.8
3,231,772	-		GFF3170	0.15	+0.7
3,231,772	-		GFF3170	0.15	-1.2
3,231,772	-		GFF3170	0.15	-1.3
3,231,772	-		GFF3170	0.15	-0.9
3,231,794	+		GFF3170	0.17	+0.9
3,231,802	-		GFF3170	0.17	-0.3
3,231,802	-		GFF3170	0.17	-0.7
3,231,802	-		GFF3170	0.17	+1.2
3,231,836	+		GFF3170	0.20	-0.3
3,231,862	+		GFF3170	0.21	-0.9
3,231,887	-		GFF3170	0.23	-0.9
3,231,899	+		GFF3170	0.24	-1.6
3,231,917	+		GFF3170	0.25	-0.7
3,231,924	+		GFF3170	0.26	+0.4
3,231,924	+		GFF3170	0.26	+0.4
3,231,924	+		GFF3170	0.26	+0.7
3,231,941	-		GFF3170	0.27	-0.6
3,231,942	-		GFF3170	0.27	-0.8
3,231,967	+		GFF3170	0.28	-0.7
3,231,972	+		GFF3170	0.29	+0.4
3,231,977	+		GFF3170	0.29	-0.5
3,231,977	+		GFF3170	0.29	-0.3
3,231,977	+		GFF3170	0.29	-1.8
3,231,977	+		GFF3170	0.29	-0.5
3,231,977	+		GFF3170	0.29	+1.0
3,231,977	+		GFF3170	0.29	-1.2
3,231,980	-		GFF3170	0.29	-0.1
3,231,980	-		GFF3170	0.29	-1.2
3,231,982	+		GFF3170	0.29	-0.3
3,231,985	-		GFF3170	0.30	-0.1
3,231,985	-		GFF3170	0.30	+0.4
3,231,985	-		GFF3170	0.30	-1.1
3,231,985	-		GFF3170	0.30	-0.4
3,231,985	-		GFF3170	0.30	-0.5
3,231,995	+		GFF3170	0.30	-1.3
3,231,996	-		GFF3170	0.30	-0.8
3,231,997	+		GFF3170	0.30	-0.6
3,232,005	-		GFF3170	0.31	-0.7
3,232,022	-		GFF3170	0.32	+0.4
3,232,022	-		GFF3170	0.32	-0.7
3,232,050	+		GFF3170	0.34	-1.1
3,232,052	+		GFF3170	0.34	+1.4
3,232,055	-		GFF3170	0.34	+1.1
3,232,057	+		GFF3170	0.34	-0.3
3,232,060	-		GFF3170	0.35	-0.3
3,232,060	-		GFF3170	0.35	+0.5
3,232,060	-		GFF3170	0.35	+0.7
3,232,062	+		GFF3170	0.35	+0.0
3,232,062	+		GFF3170	0.35	+0.1
3,232,062	+		GFF3170	0.35	-0.6
3,232,062	+		GFF3170	0.35	+0.2
3,232,070	-		GFF3170	0.35	-1.0
3,232,070	-		GFF3170	0.35	-0.5
3,232,070	-		GFF3170	0.35	-0.8
3,232,084	+		GFF3170	0.36	-0.1
3,232,086	-		GFF3170	0.36	-0.2
3,232,115	+		GFF3170	0.38	-0.4
3,232,118	-		GFF3170	0.38	-0.0
3,232,166	+		GFF3170	0.42	-0.1
3,232,170	-		GFF3170	0.42	-0.3
3,232,174	-		GFF3170	0.42	-0.8
3,232,176	+		GFF3170	0.42	-0.0
3,232,176	+		GFF3170	0.42	-1.9
3,232,176	+		GFF3170	0.42	-2.3
3,232,185	-		GFF3170	0.43	+0.2
3,232,198	+		GFF3170	0.44	+0.9
3,232,206	-		GFF3170	0.44	+0.6
3,232,217	-		GFF3170	0.45	-1.9
3,232,217	-		GFF3170	0.45	-0.3
3,232,217	-		GFF3170	0.45	-1.0
3,232,240	+		GFF3170	0.46	+0.5
3,232,240	+		GFF3170	0.46	+0.9
3,232,246	-		GFF3170	0.47	-0.8
3,232,266	+		GFF3170	0.48	-0.5
3,232,266	+		GFF3170	0.48	+0.1
3,232,266	+		GFF3170	0.48	+0.7
3,232,266	+		GFF3170	0.48	+0.7
3,232,266	-		GFF3170	0.48	-0.1
3,232,266	-		GFF3170	0.48	-0.1
3,232,266	-		GFF3170	0.48	-0.8
3,232,274	-		GFF3170	0.49	-0.6
3,232,274	-		GFF3170	0.49	-0.9
3,232,274	-		GFF3170	0.49	+0.7
3,232,279	-		GFF3170	0.49	-0.5
3,232,280	+		GFF3170	0.49	-0.2
3,232,282	+		GFF3170	0.49	-2.5
3,232,309	+		GFF3170	0.51	-0.8
3,232,317	-		GFF3170	0.52	+1.4
3,232,336	+		GFF3170	0.53	+0.8
3,232,336	+		GFF3170	0.53	-0.3
3,232,361	-		GFF3170	0.54	+1.6
3,232,422	-		GFF3170	0.59	+0.3
3,232,455	+		GFF3170	0.61	+0.9
3,232,460	+		GFF3170	0.61	-0.5
3,232,467	+		GFF3170	0.61	+0.0
3,232,475	-		GFF3170	0.62	-0.7
3,232,475	-		GFF3170	0.62	-1.3
3,232,475	-		GFF3170	0.62	-0.8
3,232,476	-		GFF3170	0.62	-2.0
3,232,478	+		GFF3170	0.62	+0.1
3,232,483	+		GFF3170	0.63	+0.2
3,232,483	+		GFF3170	0.63	-0.3
3,232,486	-		GFF3170	0.63	+0.5
3,232,491	-		GFF3170	0.63	+0.8
3,232,517	+		GFF3170	0.65	-1.1
3,232,524	+		GFF3170	0.65	-0.6
3,232,526	-		GFF3170	0.65	-0.8
3,232,532	-		GFF3170	0.66	+0.1
3,232,532	-		GFF3170	0.66	-0.2
3,232,534	+		GFF3170	0.66	+0.8
3,232,534	+		GFF3170	0.66	-1.1
3,232,534	+		GFF3170	0.66	-0.1
3,232,535	-		GFF3170	0.66	+0.9
3,232,542	-		GFF3170	0.66	+0.2
3,232,542	-		GFF3170	0.66	-0.3
3,232,564	+		GFF3170	0.68	-1.9
3,232,564	+		GFF3170	0.68	-1.3
3,232,565	+		GFF3170	0.68	-1.8
3,232,572	-		GFF3170	0.68	+0.2
3,232,573	+		GFF3170	0.69	-0.6
3,232,573	+		GFF3170	0.69	-1.2
3,232,581	-		GFF3170	0.69	+0.1
3,232,581	-		GFF3170	0.69	-1.0
3,232,581	-		GFF3170	0.69	-0.6
3,232,584	+		GFF3170	0.69	-0.6
3,232,590	+		GFF3170	0.70	+0.5
3,232,590	+		GFF3170	0.70	-1.7
3,232,590	+		GFF3170	0.70	-1.1
3,232,590	+		GFF3170	0.70	-1.9
3,232,590	+		GFF3170	0.70	+0.0
3,232,590	+		GFF3170	0.70	+0.9
3,232,598	-		GFF3170	0.70	+1.3
3,232,598	-		GFF3170	0.70	-0.9
3,232,598	-		GFF3170	0.70	+0.1
3,232,598	-		GFF3170	0.70	+0.9
3,232,598	-		GFF3170	0.70	-0.9
3,232,598	-		GFF3170	0.70	-0.5
3,232,600	+		GFF3170	0.70	+0.8
3,232,603	-		GFF3170	0.71	-1.3
3,232,608	-		GFF3170	0.71	+0.1
3,232,608	-		GFF3170	0.71	-0.3
3,232,608	-		GFF3170	0.71	+0.5
3,232,608	-		GFF3170	0.71	+0.4
3,232,613	-		GFF3170	0.71	-1.3
3,232,614	+		GFF3170	0.71	+0.1
3,232,615	+		GFF3170	0.71	+0.2
3,232,618	-		GFF3170	0.72	-1.8
3,232,622	+		GFF3170	0.72	-0.2
3,232,622	+		GFF3170	0.72	-0.3
3,232,623	-		GFF3170	0.72	-0.3
3,232,623	-		GFF3170	0.72	+0.5
3,232,623	-		GFF3170	0.72	-0.6
3,232,630	+		GFF3170	0.72	+0.2
3,232,635	+		GFF3170	0.73	+1.5
3,232,635	+		GFF3170	0.73	-0.6
3,232,635	+		GFF3170	0.73	-0.6
3,232,638	-		GFF3170	0.73	+1.0
3,232,638	-		GFF3170	0.73	-2.0
3,232,643	-		GFF3170	0.73	-0.8
3,232,643	-		GFF3170	0.73	+0.3
3,232,643	-		GFF3170	0.73	+1.5
3,232,643	-		GFF3170	0.73	-0.4
3,232,643	-		GFF3170	0.73	-1.7
3,232,681	+		GFF3170	0.76	+0.7
3,232,681	+		GFF3170	0.76	-0.4
3,232,681	+		GFF3170	0.76	-0.4
3,232,681	+		GFF3170	0.76	-0.2
3,232,681	+		GFF3170	0.76	-0.2
3,232,681	+		GFF3170	0.76	-0.3
3,232,689	-		GFF3170	0.76	-1.8
3,232,689	-		GFF3170	0.76	-0.8
3,232,707	+		GFF3170	0.77	-0.3
3,232,725	-		GFF3170	0.79	+0.6
3,232,776	+		GFF3170	0.82	+1.5
3,232,776	+		GFF3170	0.82	-0.9
3,232,784	-		GFF3170	0.83	-1.0
3,232,784	-		GFF3170	0.83	-2.1
3,232,784	-		GFF3170	0.83	+0.9
3,232,784	-		GFF3170	0.83	-1.9
3,232,804	+		GFF3170	0.84	-1.7
3,232,805	+		GFF3170	0.84	-0.5
3,232,821	+		GFF3170	0.85	-0.8
3,232,821	+		GFF3170	0.85	-0.3
3,232,821	+		GFF3170	0.85	+0.4
3,232,821	+		GFF3170	0.85	+1.6
3,232,821	+		GFF3170	0.85	-0.9
3,232,829	-		GFF3170	0.85	+0.2
3,232,829	-		GFF3170	0.85	-0.1
3,232,829	-		GFF3170	0.85	+1.2
3,232,829	-		GFF3170	0.85	+1.2
3,232,829	-		GFF3170	0.85	+0.9
3,232,829	-		GFF3170	0.85	-2.6
3,232,829	-		GFF3170	0.85	+1.7
3,232,829	-		GFF3170	0.85	-3.0
3,232,829	-		GFF3170	0.85	-0.3
3,232,846	+		GFF3170	0.87	-2.3
3,232,917	-				-0.5
3,232,923	+				-2.8
3,232,924	-				-0.1
3,232,969	-				-1.2
3,232,977	+				-0.3
3,232,982	+				+1.2
3,232,985	-				+0.1
3,232,985	-				-0.6
3,232,990	+				-1.6
3,232,990	+				-1.7
3,232,996	-				+1.0
3,233,005	+				+0.1
3,233,005	+				-0.7
3,233,011	+				-1.1
3,233,011	+				-0.1
3,233,011	+				+0.6
3,233,019	-				-1.0
3,233,019	-				+0.4
3,233,055	+				-1.8
3,233,056	+				-0.3
3,233,058	-				-0.3
3,233,077	-				-0.3
3,233,086	+				-1.0
3,233,754	-				-0.4
3,233,782	-				+0.6
3,233,800	-				-1.3
3,233,800	-				-0.1
3,233,813	-				-2.0
3,233,964	-		GFF3172	0.17	-0.7
3,233,967	-		GFF3172	0.18	-0.8
3,234,010	-		GFF3172	0.22	-1.2
3,234,047	+		GFF3172	0.25	+0.8