Strain Fitness in Sphingobium sp. HT1-2 around GFF3168

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,228,980	+		GFF3167	0.64	+0.5
3,228,980	+		GFF3167	0.64	-0.5
3,228,980	+		GFF3167	0.64	+1.3
3,228,988	-		GFF3167	0.64	+1.4
3,228,988	-		GFF3167	0.64	-0.1
3,228,988	-		GFF3167	0.64	-0.6
3,228,990	+		GFF3167	0.64	-0.3
3,228,995	+		GFF3167	0.64	+1.3
3,228,998	-		GFF3167	0.64	-0.2
3,228,998	-		GFF3167	0.64	+0.9
3,228,998	-		GFF3167	0.64	-1.2
3,229,013	-		GFF3167	0.65	+0.4
3,229,034	+		GFF3167	0.66	-1.2
3,229,044	+		GFF3167	0.66	-0.2
3,229,044	+		GFF3167	0.66	-1.6
3,229,044	+		GFF3167	0.66	+0.1
3,229,044	+		GFF3167	0.66	-2.2
3,229,052	-		GFF3167	0.67	-0.8
3,229,061	+		GFF3167	0.67	-1.3
3,229,061	+		GFF3167	0.67	-2.0
3,229,061	+		GFF3167	0.67	-1.0
3,229,061	+		GFF3167	0.67	-0.2
3,229,061	+		GFF3167	0.67	+0.7
3,229,065	+		GFF3167	0.67	-0.8
3,229,065	+		GFF3167	0.67	+0.2
3,229,066	+		GFF3167	0.67	-0.5
3,229,069	-		GFF3167	0.67	+0.7
3,229,069	-		GFF3167	0.67	-1.1
3,229,069	-		GFF3167	0.67	+0.2
3,229,069	-		GFF3167	0.67	+0.5
3,229,069	-		GFF3167	0.67	+0.2
3,229,073	-		GFF3167	0.68	+0.2
3,229,073	-		GFF3167	0.68	-2.4
3,229,082	+		GFF3167	0.68	+0.3
3,229,089	+		GFF3167	0.68	+0.2
3,229,089	+		GFF3167	0.68	+0.2
3,229,090	-		GFF3167	0.68	-0.4
3,229,097	-		GFF3167	0.69	+0.8
3,229,097	-		GFF3167	0.69	-1.2
3,229,120	-		GFF3167	0.70	-0.0
3,229,132	-		GFF3167	0.70	-2.5
3,229,132	-		GFF3167	0.70	-0.4
3,229,135	+		GFF3167	0.70	-1.1
3,229,135	+		GFF3167	0.70	-0.2
3,229,135	+		GFF3167	0.70	-1.3
3,229,135	+		GFF3167	0.70	-0.6
3,229,137	+		GFF3167	0.70	+0.6
3,229,145	+		GFF3167	0.71	+0.0
3,229,153	-		GFF3167	0.71	+1.2
3,229,153	-		GFF3167	0.71	+0.5
3,229,167	+		GFF3167	0.72	-0.1
3,229,172	+		GFF3167	0.72	-2.5
3,229,172	+		GFF3167	0.72	-0.6
3,229,175	-		GFF3167	0.72	-0.5
3,229,175	-		GFF3167	0.72	-1.5
3,229,180	-		GFF3167	0.72	+1.0
3,229,182	+		GFF3167	0.72	+0.4
3,229,190	-		GFF3167	0.73	-0.3
3,229,190	-		GFF3167	0.73	-0.6
3,229,193	+		GFF3167	0.73	-0.2
3,229,193	+		GFF3167	0.73	+0.1
3,229,193	+		GFF3167	0.73	-0.2
3,229,193	+		GFF3167	0.73	+0.8
3,229,202	+		GFF3167	0.73	+0.9
3,229,210	-		GFF3167	0.74	+0.8
3,229,210	-		GFF3167	0.74	-1.0
3,229,210	-		GFF3167	0.74	-0.4
3,229,210	-		GFF3167	0.74	-0.7
3,229,241	+		GFF3167	0.75	-0.5
3,229,243	-		GFF3167	0.75	-0.8
3,229,245	+		GFF3167	0.75	+0.2
3,229,245	+		GFF3167	0.75	+0.3
3,229,246	+		GFF3167	0.75	-1.9
3,229,249	-		GFF3167	0.75	-1.2
3,229,249	-		GFF3167	0.75	-1.9
3,229,253	-		GFF3167	0.76	-0.9
3,229,264	+		GFF3167	0.76	+0.7
3,229,269	+		GFF3167	0.76	+0.3
3,229,269	+		GFF3167	0.76	-1.2
3,229,272	-		GFF3167	0.76	-0.6
3,229,272	-		GFF3167	0.76	+0.2
3,229,311	+		GFF3167	0.78	-0.1
3,229,314	-		GFF3167	0.78	-2.1
3,229,321	+		GFF3167	0.79	+0.1
3,229,324	-		GFF3167	0.79	-0.3
3,229,332	-		GFF3167	0.79	-0.8
3,229,337	-		GFF3167	0.79	-0.5
3,229,339	+		GFF3167	0.79	-1.2
3,229,339	+		GFF3167	0.79	-0.7
3,229,347	-		GFF3167	0.80	-1.2
3,229,371	+		GFF3167	0.81	-0.8
3,229,386	+		GFF3167	0.81	-0.4
3,229,397	+		GFF3167	0.82	+0.5
3,229,397	+		GFF3167	0.82	-0.5
3,229,397	+		GFF3167	0.82	-0.9
3,229,397	+		GFF3167	0.82	+0.4
3,229,405	-		GFF3167	0.82	+1.4
3,229,433	+		GFF3167	0.83	-0.8
3,229,463	+		GFF3167	0.85	-0.4
3,229,463	+		GFF3167	0.85	+1.3
3,229,471	-		GFF3167	0.85	-1.1
3,229,471	-		GFF3167	0.85	-1.6
3,229,476	-		GFF3167	0.85	-1.8
3,229,485	-		GFF3167	0.86	-1.1
3,229,489	+		GFF3167	0.86	+0.8
3,229,498	-		GFF3167	0.86	-0.3
3,229,514	+		GFF3167	0.87	+0.6
3,229,518	-		GFF3167	0.87	-0.6
3,229,524	+		GFF3167	0.87	-0.1
3,229,524	+		GFF3167	0.87	-0.4
3,229,524	+		GFF3167	0.87	-0.3
3,229,524	+		GFF3167	0.87	+0.1
3,229,524	+		GFF3167	0.87	-0.4
3,229,524	+		GFF3167	0.87	-2.0
3,229,537	-		GFF3167	0.88	-0.2
3,229,562	-		GFF3167	0.89	-2.1
3,229,578	-		GFF3167	0.90	-0.3
3,229,607	+				+1.0
3,229,614	+				-0.5
3,229,615	-				-1.3
3,229,624	+				+0.3
3,229,624	+				+1.5
3,229,624	+				-0.3
3,229,632	-				-0.5
3,229,643	+				+1.6
3,229,645	-				-1.3
3,229,645	-				+0.4
3,229,651	-				+0.1
3,229,723	+				+0.7
3,229,728	+				-0.5
3,229,736	-				-0.2
3,229,736	-				-2.9
3,229,783	-				-0.2
3,229,886	-				+1.0
3,229,886	-				-2.1
3,229,888	+				-0.9
3,229,896	-				+0.1
3,229,904	-				+1.0
3,229,925	-				-0.7
3,229,991	+				-0.3
3,229,997	+				+0.5
3,230,009	+				-1.3
3,230,009	+				-0.9
3,230,009	+				-1.7
3,230,009	+				+1.1
3,230,009	+				+2.1
3,230,010	+				-0.6
3,230,010	+				+0.4
3,230,017	-				+0.6
3,230,017	-				-1.5
3,230,017	-				-2.7
3,230,018	-				+0.5
3,230,021	+				+0.9
3,230,021	+				+1.5
3,230,021	+				-0.3
3,230,021	+				+0.9
3,230,021	+				-1.1
3,230,022	-				+1.1
3,230,026	+				-0.8
3,230,029	-				+0.7
3,230,029	-				-0.1
3,230,072	+				+0.6
3,230,131	-		GFF3168	0.13	-2.2
3,230,138	+		GFF3168	0.14	+0.0
3,230,143	+		GFF3168	0.14	+1.4
3,230,146	-		GFF3168	0.14	+0.5
3,230,151	-		GFF3168	0.15	-0.9
3,230,158	+		GFF3168	0.15	-0.1
3,230,160	-		GFF3168	0.15	+1.1
3,230,190	+		GFF3168	0.18	+0.1
3,230,190	+		GFF3168	0.18	-0.6
3,230,190	+		GFF3168	0.18	-0.8
3,230,190	+		GFF3168	0.18	-0.1
3,230,191	+		GFF3168	0.18	-0.2
3,230,198	-		GFF3168	0.19	-2.0
3,230,213	+		GFF3168	0.20	-0.4
3,230,219	+		GFF3168	0.20	-1.6
3,230,226	+		GFF3168	0.21	+1.4
3,230,234	-		GFF3168	0.22	+0.5
3,230,234	-		GFF3168	0.22	+0.3
3,230,258	-		GFF3168	0.24	-1.0
3,230,258	-		GFF3168	0.24	-0.9
3,230,283	+		GFF3168	0.26	+0.1
3,230,291	-		GFF3168	0.26	+0.1
3,230,298	-		GFF3168	0.27	+0.4
3,230,299	-		GFF3168	0.27	-2.7
3,230,324	+		GFF3168	0.29	+1.1
3,230,324	+		GFF3168	0.29	-1.1
3,230,324	+		GFF3168	0.29	-0.6
3,230,332	-		GFF3168	0.30	+0.6
3,230,404	-		GFF3168	0.36	-0.3
3,230,404	-		GFF3168	0.36	-1.1
3,230,409	-		GFF3168	0.36	-1.4
3,230,411	+		GFF3168	0.36	-0.5
3,230,411	+		GFF3168	0.36	+0.4
3,230,417	+		GFF3168	0.37	-0.7
3,230,417	+		GFF3168	0.37	-0.5
3,230,425	-		GFF3168	0.38	-0.1
3,230,425	-		GFF3168	0.38	-0.4
3,230,429	+		GFF3168	0.38	-2.6
3,230,429	+		GFF3168	0.38	+0.9
3,230,437	-		GFF3168	0.39	+0.0
3,230,437	-		GFF3168	0.39	-0.8
3,230,441	+		GFF3168	0.39	+0.7
3,230,454	+		GFF3168	0.40	-2.1
3,230,454	-		GFF3168	0.40	-0.6
3,230,459	+		GFF3168	0.40	-2.8
3,230,473	-		GFF3168	0.42	-0.8
3,230,478	-		GFF3168	0.42	+0.4
3,230,483	+		GFF3168	0.42	-0.3
3,230,488	+		GFF3168	0.43	+0.0
3,230,488	+		GFF3168	0.43	-0.2
3,230,496	+		GFF3168	0.44	+1.7
3,230,496	+		GFF3168	0.44	-0.5
3,230,496	+		GFF3168	0.44	+0.1
3,230,496	+		GFF3168	0.44	+0.4
3,230,496	+		GFF3168	0.44	-0.0
3,230,496	+		GFF3168	0.44	+0.4
3,230,496	+		GFF3168	0.44	-0.1
3,230,496	+		GFF3168	0.44	+0.4
3,230,496	-		GFF3168	0.44	-0.8
3,230,496	-		GFF3168	0.44	-0.4
3,230,501	+		GFF3168	0.44	-0.3
3,230,501	+		GFF3168	0.44	+0.1
3,230,501	+		GFF3168	0.44	-0.5
3,230,501	+		GFF3168	0.44	+0.3
3,230,501	+		GFF3168	0.44	+1.3
3,230,501	+		GFF3168	0.44	+0.5
3,230,501	-		GFF3168	0.44	-0.7
3,230,504	-		GFF3168	0.44	+1.4
3,230,504	-		GFF3168	0.44	+0.7
3,230,504	-		GFF3168	0.44	+0.9
3,230,504	-		GFF3168	0.44	-0.7
3,230,504	-		GFF3168	0.44	-0.0
3,230,504	-		GFF3168	0.44	+1.0
3,230,504	-		GFF3168	0.44	-1.6
3,230,509	-		GFF3168	0.45	-0.3
3,230,509	-		GFF3168	0.45	-1.7
3,230,511	+		GFF3168	0.45	-0.5
3,230,511	+		GFF3168	0.45	+1.6
3,230,511	+		GFF3168	0.45	+0.2
3,230,511	+		GFF3168	0.45	-0.3
3,230,511	+		GFF3168	0.45	+0.6
3,230,514	-		GFF3168	0.45	-0.5
3,230,519	-		GFF3168	0.46	-1.8
3,230,559	-		GFF3168	0.49	-0.4
3,230,566	-		GFF3168	0.49	-0.3
3,230,594	+		GFF3168	0.52	-0.2
3,230,602	-		GFF3168	0.52	-1.9
3,230,608	-		GFF3168	0.53	-0.8
3,230,608	-		GFF3168	0.53	+0.6
3,230,660	+		GFF3168	0.57	-0.9
3,230,668	-		GFF3168	0.58	-0.1
3,230,673	-		GFF3168	0.58	-0.4
3,230,678	-		GFF3168	0.59	+0.4
3,230,706	-		GFF3168	0.61	+1.0
3,230,708	+		GFF3168	0.61	-1.8
3,230,724	-		GFF3168	0.63	-0.2
3,230,742	+		GFF3168	0.64	-0.2
3,230,750	-		GFF3168	0.65	-1.4
3,230,753	+		GFF3168	0.65	-2.1
3,230,755	+		GFF3168	0.65	+0.4
3,230,755	+		GFF3168	0.65	-0.6
3,230,755	+		GFF3168	0.65	-0.8
3,230,760	-		GFF3168	0.66	-1.9
3,230,761	-		GFF3168	0.66	-0.2
3,230,761	-		GFF3168	0.66	+0.5
3,230,762	-		GFF3168	0.66	+0.4
3,230,767	+		GFF3168	0.66	-0.6
3,230,767	+		GFF3168	0.66	-1.3
3,230,775	-		GFF3168	0.67	-0.4
3,230,775	-		GFF3168	0.67	+0.6
3,230,785	-		GFF3168	0.68	-0.8
3,230,785	-		GFF3168	0.68	-1.3
3,230,808	-		GFF3168	0.70	+1.1
3,230,824	+		GFF3168	0.71	+0.9
3,230,861	+		GFF3168	0.74	-0.6
3,230,861	+		GFF3168	0.74	+0.6
3,230,869	+		GFF3168	0.75	-1.8
3,230,869	+		GFF3168	0.75	-1.9
3,230,869	+		GFF3168	0.75	-1.6
3,230,869	-		GFF3168	0.75	-0.0
3,230,869	-		GFF3168	0.75	-1.8
3,230,877	-		GFF3168	0.76	+1.2
3,230,899	-		GFF3168	0.77	-0.1
3,230,911	+		GFF3168	0.78	-0.8
3,230,924	+		GFF3168	0.80	-1.7
3,230,930	-		GFF3168	0.80	+0.7
3,230,938	+		GFF3168	0.81	+0.2
3,230,943	+		GFF3168	0.81	+0.2
3,230,943	+		GFF3168	0.81	-0.0
3,230,946	-		GFF3168	0.81	-0.7
3,230,946	-		GFF3168	0.81	+0.2
3,230,946	-		GFF3168	0.81	-1.6
3,230,946	-		GFF3168	0.81	-1.6
3,230,946	-		GFF3168	0.81	+0.9
3,230,946	-		GFF3168	0.81	-0.2
3,230,965	+		GFF3168	0.83	-1.5
3,230,973	-		GFF3168	0.84	-1.6
3,230,979	+		GFF3168	0.84	-2.1
3,231,008	+		GFF3168	0.87	-0.1
3,231,009	+		GFF3168	0.87	-0.2
3,231,017	-		GFF3168	0.87	+0.2
3,231,039	-		GFF3168	0.89	+0.5
3,231,161	+				-1.6
3,231,161	+				-0.6
3,231,161	+				+0.8
3,231,164	-				+0.2
3,231,166	+				-1.6
3,231,168	+				-2.0
3,231,168	+				+0.6
3,231,169	-				-1.0
3,231,169	-				-2.4
3,231,176	-				-0.1
3,231,184	-				-0.2
3,231,227	-		GFF3169	0.20	-0.5
3,231,252	+		GFF3169	0.27	+0.5
3,231,264	+		GFF3169	0.30	+0.2
3,231,275	-		GFF3169	0.33	-0.6
3,231,275	-		GFF3169	0.33	-0.2
3,231,282	+		GFF3169	0.35	-0.0
3,231,282	+		GFF3169	0.35	+0.1
3,231,283	+		GFF3169	0.35	-2.6
3,231,290	-		GFF3169	0.37	+0.4
3,231,290	-		GFF3169	0.37	+0.7
3,231,291	-		GFF3169	0.37	-1.5
3,231,297	-		GFF3169	0.39	+0.6
3,231,355	+		GFF3169	0.53	-0.1
3,231,360	+		GFF3169	0.55	+0.5
3,231,365	+		GFF3169	0.56	-1.7
3,231,382	+		GFF3169	0.60	-0.6
3,231,382	+		GFF3169	0.60	+1.2
3,231,390	-		GFF3169	0.63	-0.1
3,231,416	+		GFF3169	0.69	-0.9
3,231,416	+		GFF3169	0.69	-0.3
3,231,416	+		GFF3169	0.69	-1.1
3,231,416	+		GFF3169	0.69	-0.2
3,231,424	-		GFF3169	0.71	+0.9
3,231,426	+		GFF3169	0.72	-1.7
3,231,434	-		GFF3169	0.74	-0.4
3,231,459	-		GFF3169	0.80	+1.6
3,231,466	+		GFF3169	0.82	+0.4
3,231,466	+		GFF3169	0.82	-0.9
3,231,495	-		GFF3169	0.90	+1.9
3,231,508	+				-0.0
3,231,508	-				-0.4
3,231,522	-				-0.6
3,231,527	-				-0.6
3,231,535	+				+0.5
3,231,537	-				-0.3
3,231,538	-				-1.1
3,231,540	+				+0.4
3,231,540	+				+0.0
3,231,540	+				-1.1
3,231,545	+				-0.5
3,231,548	-				+0.8
3,231,550	-				+0.1
3,231,550	-				-0.9
3,231,561	+				-0.3
3,231,574	-				-0.4
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3,231,591	+				+0.4
3,231,596	+				+0.4
3,231,599	-				-0.4
3,231,599	-				+0.8
3,231,599	-				+1.0
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3,231,599	-				-0.8
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3,231,599	-				-0.9
3,231,601	+				-0.9
3,231,601	+				+0.4
3,231,601	+				-0.7
3,231,601	+				-0.8
3,231,601	+				-0.9
3,231,604	-				-1.7
3,231,604	-				-1.0
3,231,609	-				+0.2
3,231,609	-				-0.5
3,231,609	-				-1.8
3,231,614	-				+0.6
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3,231,616	+				-1.8
3,231,624	-				-1.4
3,231,624	-				+0.9
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3,231,649	+				-2.1
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3,232,115	+		GFF3170	0.38	-0.4
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3,232,166	+		GFF3170	0.42	-0.1