Strain Fitness in Sphingobium sp. HT1-2 around GFF3138

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,206,757	-				-2.2
3,206,757	-				-2.7
3,206,780	+				-1.9
3,206,785	+				-1.3
3,206,785	+				+1.1
3,206,785	+				-0.5
3,206,785	+				-0.1
3,206,785	+				-0.2
3,206,785	+				-1.4
3,206,785	+				+0.4
3,206,785	+				+1.6
3,206,790	+				+0.7
3,206,793	-				+0.8
3,206,793	-				-1.3
3,206,793	-				+0.1
3,206,793	-				-0.1
3,206,798	-				+0.6
3,206,856	+				-1.2
3,206,860	-				-1.0
3,206,860	-				+1.2
3,206,860	-				-2.0
3,206,864	-				+1.2
3,206,869	+		GFF3137	0.11	+0.7
3,206,877	-		GFF3137	0.12	+0.7
3,206,894	-		GFF3137	0.14	-0.2
3,206,944	-		GFF3137	0.20	+0.8
3,206,951	+		GFF3137	0.21	-0.3
3,206,951	+		GFF3137	0.21	-1.8
3,206,956	+		GFF3137	0.22	-2.0
3,206,970	+		GFF3137	0.24	-2.3
3,206,970	+		GFF3137	0.24	+1.2
3,206,975	+		GFF3137	0.24	-0.6
3,206,975	+		GFF3137	0.24	+2.1
3,206,975	+		GFF3137	0.24	+0.8
3,206,975	+		GFF3137	0.24	-1.0
3,206,975	+		GFF3137	0.24	-2.6
3,206,975	+		GFF3137	0.24	+0.5
3,206,978	-		GFF3137	0.25	-0.2
3,206,978	-		GFF3137	0.25	-0.4
3,206,983	-		GFF3137	0.25	-1.6
3,206,983	-		GFF3137	0.25	-0.8
3,206,988	-		GFF3137	0.26	+1.1
3,207,003	-		GFF3137	0.28	-0.5
3,207,003	-		GFF3137	0.28	+0.7
3,207,044	+		GFF3137	0.33	+1.0
3,207,046	-		GFF3137	0.33	-1.6
3,207,049	+		GFF3137	0.34	-0.6
3,207,052	-		GFF3137	0.34	+0.0
3,207,052	-		GFF3137	0.34	-1.5
3,207,054	+		GFF3137	0.34	+0.4
3,207,055	+		GFF3137	0.34	-0.1
3,207,092	+		GFF3137	0.39	+1.5
3,207,092	+		GFF3137	0.39	-0.2
3,207,092	+		GFF3137	0.39	-0.1
3,207,096	-		GFF3137	0.40	+0.9
3,207,100	-		GFF3137	0.40	-2.2
3,207,166	-		GFF3137	0.49	+1.2
3,207,166	-		GFF3137	0.49	+0.1
3,207,182	-		GFF3137	0.51	+0.1
3,207,199	+		GFF3137	0.53	-1.4
3,207,199	+		GFF3137	0.53	+1.5
3,207,199	+		GFF3137	0.53	+1.0
3,207,199	+		GFF3137	0.53	-0.3
3,207,204	+		GFF3137	0.54	+0.7
3,207,206	+		GFF3137	0.54	+1.1
3,207,207	-		GFF3137	0.54	-0.8
3,207,251	+		GFF3137	0.60	-0.4
3,207,261	-		GFF3137	0.61	+0.3
3,207,263	+		GFF3137	0.61	-0.8
3,207,271	-		GFF3137	0.62	-2.4
3,207,274	-		GFF3137	0.63	+0.5
3,207,288	-		GFF3137	0.64	+1.1
3,207,298	-		GFF3137	0.66	+0.5
3,207,303	-		GFF3137	0.66	+0.6
3,207,305	+		GFF3137	0.67	-0.3
3,207,305	+		GFF3137	0.67	-0.2
3,207,305	+		GFF3137	0.67	-1.2
3,207,305	+		GFF3137	0.67	-1.3
3,207,305	+		GFF3137	0.67	+1.3
3,207,313	-		GFF3137	0.68	+0.1
3,207,313	-		GFF3137	0.68	-0.3
3,207,313	-		GFF3137	0.68	-0.9
3,207,313	-		GFF3137	0.68	-0.2
3,207,313	-		GFF3137	0.68	+1.1
3,207,313	-		GFF3137	0.68	-0.2
3,207,313	-		GFF3137	0.68	-0.3
3,207,313	-		GFF3137	0.68	+0.2
3,207,313	-		GFF3137	0.68	-0.7
3,207,313	-		GFF3137	0.68	-1.3
3,207,313	-		GFF3137	0.68	+0.6
3,207,313	-		GFF3137	0.68	-0.1
3,207,347	+		GFF3137	0.72	-1.0
3,207,347	+		GFF3137	0.72	-0.7
3,207,347	+		GFF3137	0.72	-0.8
3,207,347	+		GFF3137	0.72	+0.8
3,207,347	+		GFF3137	0.72	-0.5
3,207,352	+		GFF3137	0.73	-0.3
3,207,355	-		GFF3137	0.73	-0.2
3,207,355	-		GFF3137	0.73	+1.0
3,207,355	-		GFF3137	0.73	-0.0
3,207,357	+		GFF3137	0.73	+0.9
3,207,357	+		GFF3137	0.73	+1.3
3,207,362	+		GFF3137	0.74	+0.5
3,207,362	+		GFF3137	0.74	-0.3
3,207,399	-		GFF3137	0.79	-1.2
3,207,409	+		GFF3137	0.80	-0.3
3,207,409	+		GFF3137	0.80	+0.8
3,207,417	-		GFF3137	0.81	+1.4
3,207,419	+		GFF3137	0.81	-1.4
3,207,454	-		GFF3137	0.86	+0.8
3,207,458	+		GFF3137	0.86	-1.2
3,207,458	+		GFF3137	0.86	-2.1
3,207,458	+		GFF3137	0.86	+0.8
3,207,458	+		GFF3137	0.86	-0.0
3,207,466	-		GFF3137	0.87	+0.2
3,207,466	-		GFF3137	0.87	+0.6
3,207,466	-		GFF3137	0.87	+0.5
3,207,466	-		GFF3137	0.87	-0.1
3,207,466	-		GFF3137	0.87	-1.3
3,207,466	-		GFF3137	0.87	-3.0
3,207,466	-		GFF3137	0.87	-0.2
3,207,466	-		GFF3137	0.87	+0.2
3,207,466	-		GFF3137	0.87	+1.2
3,207,512	+				-2.3
3,207,512	+				-0.1
3,207,512	+				+0.8
3,207,512	+				-0.5
3,207,512	+				-0.7
3,207,520	-				+0.4
3,207,520	-				+1.2
3,207,520	-				+0.1
3,207,520	-				+0.5
3,207,520	-				-0.1
3,207,520	-				-0.4
3,207,525	-				-0.2
3,207,610	-				-0.2
3,207,621	+				-0.8
3,207,624	+				+0.1
3,207,629	-				+0.9
3,207,639	-				+1.1
3,207,697	+				-2.1
3,207,697	+				-0.9
3,207,697	+				+0.8
3,207,697	+				-0.1
3,207,697	+				-2.7
3,207,697	+				+1.2
3,207,697	+				-2.1
3,207,697	+				-1.5
3,207,705	-				-0.6
3,207,705	-				+0.0
3,207,705	-				-0.2
3,207,705	-				+0.2
3,207,705	-				-0.5
3,207,705	-				-0.4
3,207,705	-				+0.5
3,207,705	-				+0.8
3,207,705	-				-1.3
3,207,705	-				-2.1
3,207,705	-				+0.4
3,207,707	+				+0.5
3,207,707	+				+0.2
3,207,707	+				-0.6
3,207,707	+				+0.8
3,207,714	+				+1.1
3,207,715	-				-0.8
3,207,720	-				+1.1
3,207,975	+		GFF3138	0.12	-1.3
3,208,079	+		GFF3138	0.18	+0.7
3,208,224	-		GFF3138	0.26	+0.8
3,208,244	-		GFF3138	0.27	-0.2
3,208,307	+		GFF3138	0.31	-2.3
3,208,371	-		GFF3138	0.34	-1.9
3,208,371	-		GFF3138	0.34	+0.4
3,208,418	+		GFF3138	0.37	-1.3
3,208,557	+		GFF3138	0.45	-0.2
3,208,821	+		GFF3138	0.59	+0.2
3,208,903	+		GFF3138	0.64	+0.8
3,209,059	-		GFF3138	0.72	+1.1
3,209,246	+		GFF3138	0.83	+0.7
3,209,254	-		GFF3138	0.83	+0.1
3,209,284	+		GFF3138	0.85	-0.3
3,209,396	+				-0.3
3,209,412	+				-1.2
3,209,535	-				-0.2
3,209,545	-				+0.5
3,209,559	+				-0.6
3,209,560	-				+0.4
3,209,572	+				-1.2
3,209,623	+				+0.1
3,209,629	+				+1.8
3,209,637	-				-1.0
3,209,637	-				+0.2
3,209,640	+				+1.1
3,209,640	+				+0.5
3,209,653	-				+0.6
3,209,654	+				-1.0
3,209,654	+				+0.1
3,209,676	+				-0.6
3,209,688	+		GFF3139	0.10	+0.4
3,209,708	+		GFF3139	0.14	-0.7
3,209,708	+		GFF3139	0.14	+0.3
3,209,709	+		GFF3139	0.14	+0.2
3,209,740	+		GFF3139	0.20	-0.4
3,209,740	+		GFF3139	0.20	-0.2
3,209,745	+		GFF3139	0.21	+0.0
3,209,748	-		GFF3139	0.21	+0.3
3,209,753	-		GFF3139	0.22	+0.5
3,209,753	-		GFF3139	0.22	-0.0
3,209,792	+		GFF3139	0.29	+0.0
3,209,802	+		GFF3139	0.31	+0.5
3,209,807	+		GFF3139	0.32	-0.4
3,209,809	+		GFF3139	0.32	+0.4
3,209,814	+		GFF3139	0.33	-0.1
3,209,815	-		GFF3139	0.33	+0.6
3,209,815	-		GFF3139	0.33	+0.2
3,209,822	-		GFF3139	0.35	-0.3
3,209,826	+		GFF3139	0.35	-0.9
3,209,833	+		GFF3139	0.37	-0.8
3,209,834	-		GFF3139	0.37	-1.2
3,209,844	-		GFF3139	0.39	-0.2
3,209,866	+		GFF3139	0.43	-0.2
3,209,866	+		GFF3139	0.43	+0.1
3,209,874	-		GFF3139	0.44	-0.5
3,209,895	+		GFF3139	0.48	-3.3
3,209,926	-		GFF3139	0.53	-0.2
3,209,944	+		GFF3139	0.57	-1.2
3,209,971	-		GFF3139	0.62	+1.8
3,209,971	-		GFF3139	0.62	+0.7
3,209,986	+		GFF3139	0.64	-0.4
3,209,986	+		GFF3139	0.64	-0.9
3,209,986	+		GFF3139	0.64	+0.1
3,209,986	+		GFF3139	0.64	-0.3
3,209,986	+		GFF3139	0.64	+1.4
3,209,994	-		GFF3139	0.66	-1.1
3,209,996	-		GFF3139	0.66	+0.4
3,210,027	+		GFF3139	0.72	+0.5
3,210,062	+		GFF3139	0.78	+1.0
3,210,063	+		GFF3139	0.78	-1.3
3,210,067	+		GFF3139	0.79	+1.1
3,210,068	-		GFF3139	0.79	+0.2
3,210,072	+		GFF3139	0.80	+0.9
3,210,072	+		GFF3139	0.80	-0.7
3,210,080	-		GFF3139	0.81	+0.6
3,210,080	-		GFF3139	0.81	+0.6
3,210,109	+		GFF3139	0.87	+0.7
3,210,109	+		GFF3139	0.87	+0.9
3,210,109	+		GFF3139	0.87	-0.8
3,210,109	+		GFF3139	0.87	-0.8
3,210,109	+		GFF3139	0.87	-0.7
3,210,109	+		GFF3139	0.87	+0.3
3,210,109	+		GFF3139	0.87	+0.5
3,210,109	+		GFF3139	0.87	+0.2
3,210,109	+		GFF3139	0.87	+0.5
3,210,109	+		GFF3139	0.87	-0.9
3,210,109	+		GFF3139	0.87	-0.3
3,210,114	+		GFF3139	0.88	-0.9
3,210,115	-		GFF3139	0.88	-1.5
3,210,117	-		GFF3139	0.88	-0.8
3,210,117	-		GFF3139	0.88	-0.8
3,210,117	-		GFF3139	0.88	-1.7
3,210,117	-		GFF3139	0.88	+0.6
3,210,117	-		GFF3139	0.88	+0.2
3,210,117	-		GFF3139	0.88	-0.1
3,210,117	-		GFF3139	0.88	+0.2
3,210,117	-		GFF3139	0.88	+0.7
3,210,117	-		GFF3139	0.88	-0.3
3,210,117	-		GFF3139	0.88	-1.4
3,210,117	-		GFF3139	0.88	-1.8
3,210,117	-		GFF3139	0.88	+0.7
3,210,117	-		GFF3139	0.88	-0.4
3,210,117	-		GFF3139	0.88	+0.4
3,210,117	-		GFF3139	0.88	-0.5
3,210,127	-				+0.5
3,210,132	+				-0.0
3,210,140	-				-2.3
3,210,158	+				+1.0
3,210,158	+				-0.6
3,210,172	+				-0.0
3,210,177	+				+0.9
3,210,214	+				-1.1
3,210,219	+				-0.8
3,210,219	+				-0.2
3,210,222	-				-0.2
3,210,222	-				+0.4
3,210,222	-				+1.0
3,210,227	-				-0.1
3,210,242	-				-1.4