Strain Fitness in Sphingobium sp. HT1-2 around GFF3133

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,202,583	+		GFF3131	0.54	-0.3
3,202,583	+		GFF3131	0.54	-1.6
3,202,598	-		GFF3131	0.58	-1.3
3,202,600	+		GFF3131	0.59	-0.3
3,202,608	-		GFF3131	0.61	-0.5
3,202,608	-		GFF3131	0.61	+0.1
3,202,620	+		GFF3131	0.64	+0.1
3,202,628	+		GFF3131	0.66	+0.5
3,202,628	-		GFF3131	0.66	-0.4
3,202,630	+		GFF3131	0.67	+0.1
3,202,630	+		GFF3131	0.67	-0.8
3,202,630	+		GFF3131	0.67	+0.7
3,202,635	+		GFF3131	0.68	-1.5
3,202,635	+		GFF3131	0.68	+0.2
3,202,635	+		GFF3131	0.68	+1.2
3,202,635	+		GFF3131	0.68	-0.2
3,202,635	+		GFF3131	0.68	+0.2
3,202,635	+		GFF3131	0.68	+0.3
3,202,635	+		GFF3131	0.68	-0.0
3,202,635	+		GFF3131	0.68	-2.8
3,202,636	-		GFF3131	0.68	+0.6
3,202,636	-		GFF3131	0.68	-0.3
3,202,638	-		GFF3131	0.69	-1.1
3,202,638	-		GFF3131	0.69	+0.2
3,202,643	-		GFF3131	0.70	-0.3
3,202,643	-		GFF3131	0.70	-1.3
3,202,643	-		GFF3131	0.70	-1.3
3,202,652	+		GFF3131	0.72	-0.5
3,202,664	-		GFF3131	0.76	-3.3
3,202,664	-		GFF3131	0.76	+0.0
3,202,666	+		GFF3131	0.76	-1.4
3,202,666	+		GFF3131	0.76	-0.7
3,202,666	+		GFF3131	0.76	-0.1
3,202,666	-		GFF3131	0.76	+0.3
3,202,685	+		GFF3131	0.81	+0.9
3,202,685	+		GFF3131	0.81	-2.8
3,202,685	+		GFF3131	0.81	-2.5
3,202,693	-		GFF3131	0.83	-0.1
3,202,693	-		GFF3131	0.83	-0.3
3,202,693	-		GFF3131	0.83	-1.0
3,202,695	+		GFF3131	0.84	-0.3
3,202,708	-		GFF3131	0.87	-0.2
3,202,747	+				-1.8
3,202,747	+				+0.2
3,202,755	-				+0.9
3,202,755	-				+0.7
3,202,757	+				-0.2
3,202,765	-				-0.3
3,202,779	-				+1.0
3,202,779	-				-0.2
3,202,779	-				+1.2
3,202,802	-				+0.6
3,202,811	+				+1.0
3,202,811	+				+0.0
3,202,823	+				+0.6
3,202,823	+				-2.8
3,202,826	-				-0.0
3,202,842	+				-0.2
3,202,849	-				-2.0
3,202,850	-				-0.8
3,202,853	+				+0.5
3,202,853	+				+0.1
3,202,858	+				+0.4
3,202,861	-				-0.7
3,202,871	-				-1.6
3,202,873	+		GFF3132	0.10	+0.0
3,202,878	+		GFF3132	0.11	-0.2
3,202,881	-		GFF3132	0.12	+0.8
3,202,886	-		GFF3132	0.13	+1.3
3,202,895	+		GFF3132	0.14	-0.3
3,202,934	-		GFF3132	0.22	+0.1
3,202,935	-		GFF3132	0.22	+0.0
3,202,946	+		GFF3132	0.24	-1.7
3,202,947	+		GFF3132	0.25	-0.6
3,202,955	-		GFF3132	0.26	+0.8
3,203,004	+		GFF3132	0.36	-0.5
3,203,004	+		GFF3132	0.36	+1.4
3,203,004	+		GFF3132	0.36	-0.9
3,203,004	+		GFF3132	0.36	+0.7
3,203,004	+		GFF3132	0.36	+0.7
3,203,004	+		GFF3132	0.36	+0.5
3,203,012	-		GFF3132	0.37	-0.1
3,203,012	-		GFF3132	0.37	+1.4
3,203,012	-		GFF3132	0.37	-0.3
3,203,015	+		GFF3132	0.38	-0.5
3,203,017	-		GFF3132	0.38	-2.1
3,203,034	+		GFF3132	0.42	-1.6
3,203,044	+		GFF3132	0.44	-0.2
3,203,049	+		GFF3132	0.45	-0.4
3,203,052	-		GFF3132	0.45	-0.8
3,203,094	+		GFF3132	0.53	-0.2
3,203,150	-		GFF3132	0.64	-0.3
3,203,160	-		GFF3132	0.66	-2.2
3,203,214	-		GFF3132	0.77	-0.8
3,203,234	+		GFF3132	0.81	+0.7
3,203,234	+		GFF3132	0.81	-2.7
3,203,235	-		GFF3132	0.81	-0.3
3,203,242	-		GFF3132	0.82	-0.6
3,203,242	-		GFF3132	0.82	-2.1
3,203,260	+		GFF3132	0.86	-0.8
3,203,261	+		GFF3132	0.86	+0.2
3,203,261	+		GFF3132	0.86	+0.1
3,203,261	+		GFF3132	0.86	+0.3
3,203,261	+		GFF3132	0.86	+0.4
3,203,261	+		GFF3132	0.86	-1.0
3,203,261	-		GFF3132	0.86	+1.6
3,203,261	-		GFF3132	0.86	+0.2
3,203,261	-		GFF3132	0.86	-1.6
3,203,269	-		GFF3132	0.88	-0.4
3,203,269	-		GFF3132	0.88	-0.8
3,203,269	-		GFF3132	0.88	-0.7
3,203,269	-		GFF3132	0.88	-0.8
3,203,269	-		GFF3132	0.88	-2.3
3,203,269	-		GFF3132	0.88	+1.2
3,203,269	-		GFF3132	0.88	+0.4
3,203,269	-		GFF3132	0.88	+1.5
3,203,269	-		GFF3132	0.88	+0.9
3,203,269	-		GFF3132	0.88	-3.2
3,203,269	-		GFF3132	0.88	+1.4
3,203,269	-		GFF3132	0.88	-0.3
3,203,269	-		GFF3132	0.88	-0.8
3,203,269	-		GFF3132	0.88	+0.7
3,203,269	-		GFF3132	0.88	+0.1
3,203,274	-		GFF3132	0.89	-1.1
3,203,286	+				-1.3
3,203,294	-				-0.1
3,203,300	+				-0.3
3,203,312	-				-0.8
3,203,331	+				-1.3
3,203,339	-				-1.0
3,203,356	-				+0.2
3,203,367	-				+0.8
3,203,375	+				+0.7
3,203,482	+				+0.2
3,203,490	-				-0.8
3,203,506	+				-1.4
3,203,570	-				+1.0
3,203,571	+				-1.7
3,203,583	+				-0.9
3,203,583	+				-0.4
3,203,583	+				+0.7
3,203,583	+				+0.7
3,203,583	+				-0.0
3,203,591	-				-0.5
3,203,591	-				-1.0
3,203,591	-				+0.8
3,203,591	-				+0.4
3,203,591	-				-1.7
3,203,591	-				-0.2
3,203,591	-				+0.8
3,203,591	-				-0.1
3,203,591	-				-2.1
3,203,591	-				-2.5
3,203,601	-				-1.7
3,203,604	-				+1.2
3,203,606	-				-0.2
3,203,606	-				+0.2
3,203,614	-				-1.3
3,203,616	+				+0.2
3,203,621	+				-2.2
3,203,621	+				+0.4
3,203,621	+				+0.2
3,203,624	-				-0.3
3,203,629	-				-1.2
3,203,629	-				-1.7
3,203,629	-				-0.1
3,203,629	-				+0.3
3,203,629	-				+1.2
3,203,648	-				-0.9
3,203,648	-				+0.1
3,203,648	-				-0.5
3,203,648	-				-1.2
3,203,649	+		GFF3133	0.10	-1.0
3,203,669	-		GFF3133	0.13	+0.6
3,203,803	+		GFF3133	0.32	+0.6
3,203,806	+		GFF3133	0.32	-0.2
3,203,868	+		GFF3133	0.41	-0.6
3,203,868	+		GFF3133	0.41	-0.7
3,203,868	+		GFF3133	0.41	-0.6
3,203,873	+		GFF3133	0.42	+0.6
3,203,873	+		GFF3133	0.42	-0.1
3,203,873	+		GFF3133	0.42	-1.6
3,203,876	-		GFF3133	0.42	-1.1
3,203,876	-		GFF3133	0.42	-0.2
3,203,878	+		GFF3133	0.43	-0.9
3,203,899	-		GFF3133	0.46	+0.0
3,203,910	-		GFF3133	0.47	-0.4
3,203,917	+		GFF3133	0.48	-0.1
3,203,925	-		GFF3133	0.49	-0.1
3,203,925	-		GFF3133	0.49	-0.2
3,203,935	+		GFF3133	0.51	-2.1
3,203,943	-		GFF3133	0.52	+0.5
3,203,963	-		GFF3133	0.55	+0.4
3,203,977	-		GFF3133	0.57	+0.7
3,203,984	-		GFF3133	0.58	-0.6
3,203,986	+		GFF3133	0.58	-1.5
3,204,067	+		GFF3133	0.70	+0.4
3,204,075	-		GFF3133	0.71	-1.2
3,204,076	-		GFF3133	0.71	+0.2
3,204,098	+		GFF3133	0.74	-0.2
3,204,098	+		GFF3133	0.74	-1.8
3,204,098	+		GFF3133	0.74	-0.2
3,204,098	+		GFF3133	0.74	+0.4
3,204,098	+		GFF3133	0.74	-1.3
3,204,098	+		GFF3133	0.74	+0.7
3,204,098	+		GFF3133	0.74	+0.5
3,204,106	-		GFF3133	0.75	+0.2
3,204,106	-		GFF3133	0.75	-1.0
3,204,106	-		GFF3133	0.75	+0.4
3,204,106	-		GFF3133	0.75	-1.3
3,204,106	-		GFF3133	0.75	+0.4
3,204,108	+		GFF3133	0.75	+1.7
3,204,108	+		GFF3133	0.75	-0.3
3,204,108	+		GFF3133	0.75	-1.8
3,204,108	+		GFF3133	0.75	-0.9
3,204,108	+		GFF3133	0.75	-0.2
3,204,116	-		GFF3133	0.77	-0.2
3,204,116	-		GFF3133	0.77	-0.1
3,204,116	-		GFF3133	0.77	+0.2
3,204,122	+		GFF3133	0.77	+1.1
3,204,127	+		GFF3133	0.78	-2.3
3,204,127	+		GFF3133	0.78	-1.2
3,204,127	+		GFF3133	0.78	+0.9
3,204,127	+		GFF3133	0.78	+0.1
3,204,130	-		GFF3133	0.79	-1.1
3,204,130	-		GFF3133	0.79	-1.2
3,204,130	-		GFF3133	0.79	-1.5
3,204,132	+		GFF3133	0.79	+0.5
3,204,135	-		GFF3133	0.79	+0.5
3,204,138	+		GFF3133	0.80	+1.0
3,204,138	+		GFF3133	0.80	-1.3
3,204,146	+		GFF3133	0.81	-1.1
3,204,156	+		GFF3133	0.82	+0.8
3,204,156	+		GFF3133	0.82	-1.5
3,204,175	-		GFF3133	0.85	+0.7
3,204,177	+		GFF3133	0.85	-1.0
3,204,182	-		GFF3133	0.86	+0.8
3,204,203	+		GFF3133	0.89	+0.6
3,204,213	+				+0.8
3,204,221	-				-0.2
3,204,251	-				+0.3
3,204,261	-				+0.8
3,204,268	+				+1.0
3,204,359	-				-0.5
3,204,369	+				-0.5
3,204,412	+				+1.2
3,204,412	+				-0.6
3,204,413	-				-1.1
3,204,483	-				-0.8
3,204,493	-				-0.8
3,204,503	-				-0.0
3,204,511	+				-0.6
3,204,535	+		GFF3134	0.12	+0.8
3,204,543	-		GFF3134	0.14	+1.8
3,204,554	+		GFF3134	0.17	+0.0
3,204,587	+		GFF3134	0.26	+0.2
3,204,587	+		GFF3134	0.26	+0.8
3,204,595	-		GFF3134	0.28	-1.2
3,204,595	-		GFF3134	0.28	+0.1
3,204,595	-		GFF3134	0.28	+0.5
3,204,595	-		GFF3134	0.28	-0.5
3,204,595	-		GFF3134	0.28	-0.7
3,204,595	-		GFF3134	0.28	-0.2
3,204,597	+		GFF3134	0.28	-1.5
3,204,597	+		GFF3134	0.28	+1.1
3,204,597	+		GFF3134	0.28	-2.3
3,204,605	-		GFF3134	0.30	-1.1
3,204,605	-		GFF3134	0.30	+0.4
3,204,605	-		GFF3134	0.30	-1.3
3,204,627	+		GFF3134	0.36	+0.5
3,204,627	+		GFF3134	0.36	-0.7
3,204,627	+		GFF3134	0.36	+0.7
3,204,634	+		GFF3134	0.38	-0.6
3,204,634	+		GFF3134	0.38	-0.9
3,204,635	-		GFF3134	0.38	-0.2
3,204,642	-		GFF3134	0.40	+0.5
3,204,642	-		GFF3134	0.40	-0.1
3,204,642	-		GFF3134	0.40	-1.6
3,204,659	+		GFF3134	0.44	+0.3
3,204,659	+		GFF3134	0.44	+0.8
3,204,659	+		GFF3134	0.44	+0.4
3,204,659	+		GFF3134	0.44	+0.8
3,204,659	+		GFF3134	0.44	-1.0
3,204,667	-		GFF3134	0.47	-0.6
3,204,667	-		GFF3134	0.47	+1.4
3,204,667	-		GFF3134	0.47	-0.1
3,204,677	-		GFF3134	0.49	-0.4
3,204,712	-		GFF3134	0.58	-1.8
3,204,712	-		GFF3134	0.58	-2.6
3,204,746	+		GFF3134	0.67	-0.3
3,204,746	+		GFF3134	0.67	+0.1
3,204,746	+		GFF3134	0.67	+0.4
3,204,751	+		GFF3134	0.68	-0.3
3,204,751	+		GFF3134	0.68	-0.5
3,204,754	-		GFF3134	0.69	+0.2
3,204,754	-		GFF3134	0.69	-0.1
3,204,758	+		GFF3134	0.70	-0.0
3,204,758	+		GFF3134	0.70	-1.3
3,204,758	+		GFF3134	0.70	-1.2
3,204,817	+		GFF3134	0.85	-2.6
3,204,817	+		GFF3134	0.85	-0.9
3,204,827	+		GFF3134	0.88	-1.3
3,204,827	+		GFF3134	0.88	+0.3
3,204,835	-				+0.9
3,204,866	-				+0.3
3,204,885	+				+0.6
3,204,893	-				+0.7
3,204,916	-				-0.6
3,204,947	+				-0.6
3,204,947	+				-2.1
3,204,947	+				-0.3
3,204,947	+				+0.6
3,204,947	+				-0.6
3,204,953	+				-1.3
3,204,955	-				+0.2
3,204,955	-				+0.3
3,204,961	-				+0.4
3,204,961	-				-1.0
3,204,961	-				-0.8
3,204,962	-				+0.6
3,205,022	+				+1.3
3,205,022	+				+1.1
3,205,022	+				-0.2
3,205,022	+				-1.5
3,205,022	+				-0.0
3,205,028	-				-0.2
3,205,030	-				+1.2
3,205,030	-				-1.2
3,205,030	-				-3.1
3,205,030	-				-0.6
3,205,059	-				+0.4
3,205,059	-				+0.4
3,205,059	-				+1.0
3,205,061	+				-0.7
3,205,061	+				-2.2
3,205,090	+		GFF3135	0.13	+0.1
3,205,093	-		GFF3135	0.13	-0.0
3,205,098	-		GFF3135	0.14	-0.1
3,205,098	-		GFF3135	0.14	+1.1
3,205,118	+		GFF3135	0.18	-0.0
3,205,118	+		GFF3135	0.18	-0.9
3,205,121	-		GFF3135	0.18	-0.0
3,205,126	+		GFF3135	0.19	-0.9
3,205,126	-		GFF3135	0.19	-0.7
3,205,126	-		GFF3135	0.19	+1.2
3,205,137	+		GFF3135	0.21	+0.6
3,205,137	+		GFF3135	0.21	-2.0
3,205,143	-		GFF3135	0.22	+1.1
3,205,145	+		GFF3135	0.23	-0.1
3,205,145	-		GFF3135	0.23	-1.5
3,205,145	-		GFF3135	0.23	-0.0
3,205,145	-		GFF3135	0.23	-1.3
3,205,145	-		GFF3135	0.23	-2.5
3,205,145	-		GFF3135	0.23	-0.4
3,205,145	-		GFF3135	0.23	+1.2
3,205,145	-		GFF3135	0.23	+0.7
3,205,153	-		GFF3135	0.24	-0.9
3,205,159	+		GFF3135	0.25	-0.1
3,205,169	+		GFF3135	0.27	+0.1
3,205,169	+		GFF3135	0.27	-0.4
3,205,169	+		GFF3135	0.27	+0.5
3,205,174	+		GFF3135	0.28	-1.3
3,205,177	-		GFF3135	0.28	-0.2
3,205,177	-		GFF3135	0.28	-3.2
3,205,177	-		GFF3135	0.28	+0.2
3,205,182	-		GFF3135	0.29	-0.2
3,205,203	-		GFF3135	0.33	+1.2
3,205,250	+		GFF3135	0.42	-1.0
3,205,258	-		GFF3135	0.43	+0.5
3,205,264	+		GFF3135	0.44	-0.8
3,205,264	+		GFF3135	0.44	-0.0
3,205,264	+		GFF3135	0.44	-1.2
3,205,269	+		GFF3135	0.45	-1.1
3,205,277	-		GFF3135	0.46	+0.2
3,205,277	-		GFF3135	0.46	+0.7
3,205,279	-		GFF3135	0.47	+0.3
3,205,279	-		GFF3135	0.47	+1.2