Strain Fitness in Sphingobium sp. HT1-2 around GFF3106

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,176,702	-				-1.7
3,176,702	-				-0.6
3,176,716	-				-2.1
3,176,719	+				+0.6
3,176,733	+				+0.0
3,176,733	+				+1.7
3,176,733	+				-0.4
3,176,741	-				+0.4
3,176,746	+				+0.8
3,176,751	+		GFF3105	0.10	+0.1
3,176,751	+		GFF3105	0.10	-1.7
3,176,751	+		GFF3105	0.10	+0.1
3,176,751	+		GFF3105	0.10	+0.7
3,176,751	+		GFF3105	0.10	-1.3
3,176,751	+		GFF3105	0.10	-1.3
3,176,751	+		GFF3105	0.10	+0.4
3,176,751	+		GFF3105	0.10	-0.5
3,176,754	+		GFF3105	0.11	-0.2
3,176,756	+		GFF3105	0.11	-0.7
3,176,759	-		GFF3105	0.11	-0.3
3,176,759	-		GFF3105	0.11	+1.2
3,176,759	-		GFF3105	0.11	+0.1
3,176,759	-		GFF3105	0.11	-0.8
3,176,759	-		GFF3105	0.11	+1.1
3,176,759	-		GFF3105	0.11	+0.9
3,176,759	-		GFF3105	0.11	+0.2
3,176,773	+		GFF3105	0.13	+0.8
3,176,773	+		GFF3105	0.13	-0.9
3,176,773	+		GFF3105	0.13	+0.4
3,176,776	-		GFF3105	0.13	-2.1
3,176,781	-		GFF3105	0.14	-0.5
3,176,781	-		GFF3105	0.14	-0.4
3,176,781	-		GFF3105	0.14	-0.4
3,176,804	+		GFF3105	0.16	-0.2
3,176,804	+		GFF3105	0.16	-0.1
3,176,812	-		GFF3105	0.17	+0.1
3,176,812	-		GFF3105	0.17	-2.3
3,176,821	+		GFF3105	0.18	-0.4
3,176,825	+		GFF3105	0.18	-0.4
3,176,826	+		GFF3105	0.18	+0.0
3,176,829	-		GFF3105	0.19	+0.1
3,176,832	-		GFF3105	0.19	-0.5
3,176,833	-		GFF3105	0.19	+1.2
3,176,833	-		GFF3105	0.19	+0.5
3,176,834	-		GFF3105	0.19	-0.1
3,176,845	-		GFF3105	0.20	-0.6
3,176,870	-		GFF3105	0.23	-1.6
3,176,877	-		GFF3105	0.24	+0.1
3,176,904	+		GFF3105	0.26	+1.6
3,176,905	+		GFF3105	0.27	-2.2
3,176,912	+		GFF3105	0.27	+1.8
3,176,950	+		GFF3105	0.31	+0.6
3,176,960	+		GFF3105	0.32	-0.8
3,176,969	+		GFF3105	0.33	-0.2
3,176,969	+		GFF3105	0.33	-1.8
3,176,969	+		GFF3105	0.33	-1.6
3,176,977	-		GFF3105	0.34	+0.1
3,176,977	-		GFF3105	0.34	+0.9
3,176,977	-		GFF3105	0.34	-0.4
3,176,995	+		GFF3105	0.36	+1.1
3,177,014	-		GFF3105	0.38	-0.2
3,177,042	+		GFF3105	0.41	-0.4
3,177,050	-		GFF3105	0.42	+0.3
3,177,050	-		GFF3105	0.42	-0.5
3,177,050	-		GFF3105	0.42	-0.1
3,177,064	+		GFF3105	0.43	-0.6
3,177,078	+		GFF3105	0.45	-0.2
3,177,111	+		GFF3105	0.48	-0.1
3,177,130	+		GFF3105	0.50	+0.4
3,177,130	+		GFF3105	0.50	-0.3
3,177,130	+		GFF3105	0.50	-1.1
3,177,138	-		GFF3105	0.51	-1.4
3,177,138	-		GFF3105	0.51	-0.3
3,177,140	+		GFF3105	0.51	-1.5
3,177,148	-		GFF3105	0.52	-0.5
3,177,165	+		GFF3105	0.54	+0.1
3,177,227	-		GFF3105	0.60	-1.2
3,177,243	+		GFF3105	0.62	-1.0
3,177,251	-		GFF3105	0.63	-2.9
3,177,253	+		GFF3105	0.63	-0.6
3,177,261	+		GFF3105	0.64	-0.2
3,177,269	-		GFF3105	0.65	-0.1
3,177,273	+		GFF3105	0.65	-0.8
3,177,279	+		GFF3105	0.66	-0.3
3,177,310	-		GFF3105	0.69	+1.6
3,177,322	+		GFF3105	0.70	-0.1
3,177,339	+		GFF3105	0.72	-1.3
3,177,349	+		GFF3105	0.73	-2.0
3,177,352	-		GFF3105	0.74	+0.1
3,177,352	-		GFF3105	0.74	-2.4
3,177,357	-		GFF3105	0.74	-0.6
3,177,359	+		GFF3105	0.74	-2.8
3,177,359	+		GFF3105	0.74	+0.7
3,177,437	+		GFF3105	0.83	+0.4
3,177,437	+		GFF3105	0.83	-0.5
3,177,437	+		GFF3105	0.83	-0.3
3,177,445	-		GFF3105	0.83	-0.6
3,177,445	-		GFF3105	0.83	-0.5
3,177,450	-		GFF3105	0.84	-0.1
3,177,450	-		GFF3105	0.84	-0.0
3,177,463	+		GFF3105	0.85	-0.2
3,177,494	-		GFF3105	0.89	-1.0
3,177,516	-				-0.5
3,177,520	+				-1.8
3,177,520	+				+0.1
3,177,520	+				+1.2
3,177,528	-				+0.8
3,177,528	-				-1.2
3,177,528	-				-1.7
3,177,528	-				-0.7
3,177,528	-				-0.4
3,177,528	-				-0.5
3,177,528	-				-0.3
3,177,530	+				-1.3
3,177,530	+				-1.2
3,177,530	+				-0.8
3,177,538	-				+0.9
3,177,538	-				+0.5
3,177,538	-				-1.3
3,177,544	+				-0.1
3,177,548	+				-0.2
3,177,548	+				+2.5
3,177,548	+				-0.6
3,177,548	+				+1.2
3,177,548	+				-0.9
3,177,552	+				-1.3
3,177,552	+				+0.6
3,177,552	+				-2.0
3,177,553	+				-0.5
3,177,556	-				-0.1
3,177,556	-				-0.9
3,177,556	-				-0.1
3,177,556	-				+0.7
3,177,556	-				+0.2
3,177,560	-				+0.2
3,177,560	-				-0.0
3,177,561	-				+0.5
3,177,561	-				+0.4
3,177,571	-				-0.8
3,177,587	+				-1.8
3,177,587	-				+0.7
3,177,588	+				-1.0
3,177,588	+				-1.5
3,177,588	+				-2.6
3,177,588	+				+0.3
3,177,588	+				-0.7
3,177,593	+				-0.7
3,177,593	+				-1.8
3,177,596	-				-0.1
3,177,596	-				-0.7
3,177,596	-				+0.0
3,177,596	-				-1.2
3,177,596	-				-1.0
3,177,596	-				+1.1
3,177,596	-				-2.5
3,177,596	-				-0.4
3,177,596	-				+0.3
3,177,596	-				-1.5
3,177,596	-				-1.0
3,177,598	+				-0.7
3,177,601	-				+0.5
3,177,601	-				-0.0
3,177,606	-				-2.5
3,177,626	+				+0.1
3,177,629	-				-0.1
3,177,629	-				+0.9
3,177,702	-				+0.4
3,177,703	-				+0.2
3,177,712	+				+0.2
3,177,758	+				-0.8
3,177,766	+				+1.0
3,177,766	+				-0.4
3,177,766	+				-1.2
3,177,766	+				-0.2
3,177,766	+				+1.5
3,177,774	-				-1.5
3,177,774	-				+0.2
3,177,774	-				-0.1
3,177,774	-				-0.1
3,177,776	+				-0.9
3,177,776	+				+0.2
3,177,776	+				+0.5
3,177,776	+				+1.4
3,177,802	+		GFF3106	0.10	+0.8
3,177,820	-		GFF3106	0.12	-0.6
3,177,832	+		GFF3106	0.13	-0.9
3,177,832	+		GFF3106	0.13	+0.7
3,177,850	-		GFF3106	0.14	-0.3
3,177,860	-		GFF3106	0.15	-0.2
3,177,860	-		GFF3106	0.15	+0.4
3,177,865	-		GFF3106	0.16	+1.8
3,177,867	+		GFF3106	0.16	-0.3
3,177,885	-		GFF3106	0.18	-0.4
3,177,887	+		GFF3106	0.18	-0.1
3,177,889	-		GFF3106	0.18	-0.1
3,177,902	+		GFF3106	0.19	+0.8
3,177,949	-		GFF3106	0.23	-1.2
3,177,970	+		GFF3106	0.25	+0.3
3,177,970	+		GFF3106	0.25	-0.5
3,177,970	+		GFF3106	0.25	+0.5
3,177,978	-		GFF3106	0.26	+0.1
3,177,978	-		GFF3106	0.26	+0.2
3,177,986	-		GFF3106	0.26	-0.1
3,178,004	-		GFF3106	0.28	-1.1
3,178,010	+		GFF3106	0.29	-1.2
3,178,016	+		GFF3106	0.29	-0.8
3,178,021	+		GFF3106	0.30	+0.6
3,178,029	-		GFF3106	0.30	-0.3
3,178,039	-		GFF3106	0.31	-2.3
3,178,047	-		GFF3106	0.32	+1.7
3,178,059	+		GFF3106	0.33	+1.1
3,178,059	+		GFF3106	0.33	+2.0
3,178,059	+		GFF3106	0.33	+0.8
3,178,059	+		GFF3106	0.33	-0.1
3,178,059	+		GFF3106	0.33	-0.2
3,178,062	-		GFF3106	0.33	+1.5
3,178,062	-		GFF3106	0.33	+0.3
3,178,062	-		GFF3106	0.33	+0.2
3,178,067	-		GFF3106	0.34	-0.0
3,178,067	-		GFF3106	0.34	-1.5
3,178,074	+		GFF3106	0.34	-1.1
3,178,079	+		GFF3106	0.35	-2.6
3,178,100	+		GFF3106	0.37	-1.0
3,178,116	-		GFF3106	0.38	+0.7
3,178,131	+		GFF3106	0.39	-1.1
3,178,148	+		GFF3106	0.41	-0.4
3,178,148	+		GFF3106	0.41	-0.3
3,178,152	+		GFF3106	0.41	-1.3
3,178,156	-		GFF3106	0.41	+0.5
3,178,156	-		GFF3106	0.41	+0.7
3,178,156	-		GFF3106	0.41	+0.7
3,178,164	+		GFF3106	0.42	+0.6
3,178,169	+		GFF3106	0.43	-0.1
3,178,174	+		GFF3106	0.43	-2.1
3,178,174	+		GFF3106	0.43	-0.2
3,178,182	-		GFF3106	0.44	-0.6
3,178,182	-		GFF3106	0.44	-0.3
3,178,182	-		GFF3106	0.44	-0.2
3,178,187	-		GFF3106	0.44	-0.9
3,178,205	-		GFF3106	0.46	+0.7
3,178,205	-		GFF3106	0.46	-0.2
3,178,205	-		GFF3106	0.46	-0.1
3,178,209	+		GFF3106	0.46	-0.3
3,178,212	+		GFF3106	0.46	+0.4
3,178,225	-		GFF3106	0.48	-1.5
3,178,225	-		GFF3106	0.48	-0.7
3,178,239	+		GFF3106	0.49	-0.6
3,178,240	-		GFF3106	0.49	-1.5
3,178,247	-		GFF3106	0.50	+1.5
3,178,252	+		GFF3106	0.50	-0.4
3,178,263	+		GFF3106	0.51	-1.9
3,178,271	-		GFF3106	0.52	-0.4
3,178,271	-		GFF3106	0.52	+0.3
3,178,310	+		GFF3106	0.55	+0.9
3,178,310	+		GFF3106	0.55	+0.1
3,178,318	-		GFF3106	0.56	+0.7
3,178,339	-		GFF3106	0.58	-1.0
3,178,344	-		GFF3106	0.58	-3.0
3,178,433	+		GFF3106	0.66	+0.4
3,178,433	+		GFF3106	0.66	-1.1
3,178,433	+		GFF3106	0.66	+0.7
3,178,440	+		GFF3106	0.67	-0.5
3,178,441	-		GFF3106	0.67	+0.9
3,178,441	-		GFF3106	0.67	-1.7
3,178,442	-		GFF3106	0.67	+0.4
3,178,467	+		GFF3106	0.69	+0.5
3,178,472	+		GFF3106	0.69	+0.1
3,178,475	-		GFF3106	0.70	-0.3
3,178,475	-		GFF3106	0.70	-0.8
3,178,482	-		GFF3106	0.70	-0.3
3,178,486	+		GFF3106	0.71	+0.9
3,178,490	+		GFF3106	0.71	+0.0
3,178,490	+		GFF3106	0.71	-0.5
3,178,491	+		GFF3106	0.71	+0.7
3,178,491	+		GFF3106	0.71	-0.9
3,178,494	-		GFF3106	0.71	+0.4
3,178,514	-		GFF3106	0.73	+0.1
3,178,530	+		GFF3106	0.75	-0.6
3,178,572	+		GFF3106	0.78	+0.6
3,178,574	-		GFF3106	0.78	-0.8
3,178,603	-		GFF3106	0.81	-0.4
3,178,627	-		GFF3106	0.83	+0.0
3,178,628	+		GFF3106	0.83	+0.2
3,178,636	-		GFF3106	0.84	+0.9
3,178,636	-		GFF3106	0.84	-0.8
3,178,649	+		GFF3106	0.85	-0.2
3,178,649	+		GFF3106	0.85	+0.7
3,178,656	-		GFF3106	0.86	-0.9
3,178,656	-		GFF3106	0.86	+0.6
3,178,657	-		GFF3106	0.86	+0.0
3,178,662	+		GFF3106	0.86	-0.9
3,178,670	-		GFF3106	0.87	-0.0
3,178,670	-		GFF3106	0.87	+0.8
3,178,670	-		GFF3106	0.87	+0.8
3,178,697	-		GFF3106	0.89	+0.2
3,178,704	+		GFF3106	0.90	+0.6
3,178,709	+				-0.5
3,178,709	+				+0.1
3,178,709	+				-0.1
3,178,717	-				+1.0
3,178,717	-				+1.1
3,178,717	-				+1.1
3,178,727	+				+0.9
3,178,727	+				+2.2
3,178,727	+				-0.4
3,178,727	+				+1.7
3,178,727	+				+0.7
3,178,727	+				-1.1
3,178,727	+				+0.9
3,178,727	+				+1.0
3,178,727	+				-1.4
3,178,727	+				-0.5
3,178,727	+				+0.9
3,178,727	+				-0.6
3,178,732	+				+0.1
3,178,733	-				-1.9
3,178,735	-				+0.1
3,178,735	-				-1.1
3,178,735	-				-1.1
3,178,735	-				+1.6
3,178,735	-				-1.3
3,178,735	-				-2.2
3,178,735	-				-0.8
3,178,735	-				-0.5
3,178,735	-				+0.4
3,178,735	-				+1.0
3,178,736	-				+0.8
3,178,754	-				+0.8
3,178,765	+				+0.8
3,178,770	+				-1.5
3,178,770	+				-0.9
3,178,770	+				-0.4
3,178,773	-				+0.9
3,178,774	-				+0.7
3,178,778	-				-0.5
3,178,778	-				-1.1
3,178,778	-				+0.8
3,178,778	-				-1.9
3,178,778	-				-2.2
3,178,778	-				+0.8
3,178,793	-				+1.0
3,178,804	+				-0.3
3,178,806	+				-0.3
3,178,806	+				-0.2
3,178,806	+				-1.2
3,178,810	-				+0.2
3,178,811	+				-0.8
3,178,814	-				-0.3
3,178,825	+				-1.7
3,178,833	-				-0.8
3,178,833	-				-1.3
3,178,857	+				+0.6
3,178,857	+				-0.6
3,178,865	-				-0.5
3,178,877	-		GFF3107	0.11	-0.2
3,178,878	+		GFF3107	0.11	-1.3
3,178,884	-		GFF3107	0.12	-1.4
3,178,909	+		GFF3107	0.16	-0.7
3,178,926	+		GFF3107	0.19	+1.6
3,178,926	+		GFF3107	0.19	-1.0
3,178,934	-		GFF3107	0.20	-0.7
3,178,950	+		GFF3107	0.23	-1.2
3,178,958	-		GFF3107	0.24	-1.7
3,178,989	+		GFF3107	0.29	+0.4
3,178,989	+		GFF3107	0.29	-1.2
3,178,989	+		GFF3107	0.29	+0.1
3,178,989	+		GFF3107	0.29	+0.3
3,178,989	+		GFF3107	0.29	+0.2
3,178,989	+		GFF3107	0.29	+0.5
3,178,989	+		GFF3107	0.29	-2.6
3,178,989	+		GFF3107	0.29	-1.8
3,178,989	+		GFF3107	0.29	-0.1
3,178,997	-		GFF3107	0.31	+0.0
3,178,997	-		GFF3107	0.31	-0.9
3,178,997	-		GFF3107	0.31	-0.6
3,178,997	-		GFF3107	0.31	+0.2
3,179,006	+		GFF3107	0.32	-0.6
3,179,014	-		GFF3107	0.34	-0.0
3,179,019	-		GFF3107	0.35	+0.4
3,179,019	-		GFF3107	0.35	-1.8
3,179,022	+		GFF3107	0.35	-0.3
3,179,035	+		GFF3107	0.37	+0.3
3,179,051	+		GFF3107	0.40	+0.2
3,179,061	+		GFF3107	0.42	-1.0
3,179,069	-		GFF3107	0.43	+0.7
3,179,069	-		GFF3107	0.43	-1.7
3,179,069	-		GFF3107	0.43	+0.7
3,179,071	+		GFF3107	0.43	-1.6
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3,179,097	+		GFF3107	0.48	-1.1
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3,179,191	+		GFF3107	0.63	+0.3
3,179,191	+		GFF3107	0.63	-1.9
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3,179,191	+		GFF3107	0.63	-2.7
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3,179,199	-		GFF3107	0.65	-2.3
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3,179,199	-		GFF3107	0.65	-2.0
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3,179,233	+		GFF3107	0.71	-2.4
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3,179,354	-				-0.3
3,179,363	+				+0.1
3,179,420	-				-2.8
3,179,433	-				-0.5
3,179,433	-				+0.2
3,179,433	-				+0.7
3,179,453	+				+0.1
3,179,467	-				+0.2
3,179,467	-				-3.5
3,179,474	+				+0.5
3,179,477	-				-1.2
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