Strain Fitness in Sphingobium sp. HT1-2 around GFF3061

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,133,475	-				-1.2
3,133,494	+				-0.2
3,133,494	+				-0.9
3,133,494	+				-0.9
3,133,494	+				-0.3
3,133,494	+				-1.0
3,133,494	+				-0.2
3,133,494	+				+0.2
3,133,494	+				+0.1
3,133,494	+				-2.7
3,133,494	+				+1.1
3,133,494	+				-0.5
3,133,494	+				-2.2
3,133,499	+				-2.6
3,133,499	+				-0.7
3,133,502	-				-2.0
3,133,502	-				+0.3
3,133,502	-				-1.6
3,133,502	-				-0.7
3,133,502	-				-0.3
3,133,502	-				+0.1
3,133,502	-				-0.8
3,133,502	-				-1.5
3,133,502	-				-0.5
3,133,502	-				-0.1
3,133,502	-				-0.3
3,133,507	-		GFF3059	0.10	-2.1
3,133,507	-		GFF3059	0.10	-2.6
3,133,512	-		GFF3059	0.12	-2.0
3,133,548	-		GFF3059	0.25	-2.4
3,133,548	-		GFF3059	0.25	-1.7
3,133,550	+		GFF3059	0.25	-1.5
3,133,550	+		GFF3059	0.25	-0.2
3,133,550	+		GFF3059	0.25	-0.7
3,133,550	+		GFF3059	0.25	-1.8
3,133,550	+		GFF3059	0.25	-2.0
3,133,550	+		GFF3059	0.25	-0.2
3,133,550	+		GFF3059	0.25	-2.7
3,133,558	-		GFF3059	0.28	-0.8
3,133,558	-		GFF3059	0.28	-2.0
3,133,558	-		GFF3059	0.28	-2.6
3,133,558	-		GFF3059	0.28	-2.4
3,133,558	-		GFF3059	0.28	-3.3
3,133,568	-		GFF3059	0.32	-1.2
3,133,575	-		GFF3059	0.34	-1.3
3,133,647	-		GFF3059	0.59	-0.4
3,133,667	-		GFF3059	0.66	-2.7
3,133,667	-		GFF3059	0.66	-0.9
3,133,667	-		GFF3059	0.66	-1.3
3,133,667	-		GFF3059	0.66	-1.1
3,133,667	-		GFF3059	0.66	-2.2
3,133,697	+		GFF3059	0.76	-1.1
3,133,697	+		GFF3059	0.76	+1.6
3,133,697	+		GFF3059	0.76	-0.5
3,133,697	+		GFF3059	0.76	-1.2
3,133,697	+		GFF3059	0.76	-3.0
3,133,697	+		GFF3059	0.76	-0.9
3,133,705	-		GFF3059	0.79	-1.6
3,133,705	-		GFF3059	0.79	-1.1
3,133,705	-		GFF3059	0.79	-2.1
3,133,705	-		GFF3059	0.79	-1.2
3,133,705	-		GFF3059	0.79	-1.2
3,133,705	-		GFF3059	0.79	-2.4
3,133,715	-		GFF3059	0.83	-0.8
3,133,715	-		GFF3059	0.83	-2.5
3,133,741	+				-0.9
3,133,744	-				-3.2
3,133,758	+				-0.3
3,133,758	+				+0.0
3,133,758	+				+0.9
3,133,758	+				-2.3
3,133,761	-				-1.5
3,133,763	+				+1.0
3,133,765	+				-0.8
3,133,765	+				-2.0
3,133,765	+				-1.7
3,133,765	+				-2.4
3,133,773	-				-2.5
3,133,775	+				-3.6
3,133,793	-				-1.2
3,133,803	-				-3.0
3,133,806	+				-0.9
3,133,806	+				-1.4
3,133,806	+				-2.5
3,133,810	+				-0.4
3,133,810	+				-1.5
3,133,810	+				-0.4
3,133,814	-				-2.9
3,133,814	-				-2.8
3,133,815	+				-1.5
3,133,815	+				-0.1
3,133,815	+				-1.9
3,133,815	+				-3.2
3,133,815	+				-2.6
3,133,815	+				-2.8
3,133,815	+				-1.2
3,133,816	-				-2.1
3,133,818	-				-3.3
3,133,818	-				-3.2
3,133,818	-				-2.8
3,133,818	-				-2.6
3,133,818	-				-1.3
3,133,820	+				-2.8
3,133,820	+				-1.1
3,133,820	+				-1.8
3,133,823	-		GFF3060	0.10	-2.1
3,133,823	-		GFF3060	0.10	-0.5
3,133,823	-		GFF3060	0.10	-0.1
3,133,823	-		GFF3060	0.10	-2.9
3,133,828	-		GFF3060	0.11	-2.7
3,133,828	-		GFF3060	0.11	-2.1
3,133,838	-		GFF3060	0.13	-2.7
3,133,885	+		GFF3060	0.20	-1.8
3,133,888	-		GFF3060	0.21	-1.7
3,133,890	+		GFF3060	0.21	-1.7
3,133,890	+		GFF3060	0.21	-1.6
3,133,890	+		GFF3060	0.21	-0.7
3,133,898	-		GFF3060	0.22	-1.9
3,133,935	+		GFF3060	0.28	-2.9
3,133,972	-		GFF3060	0.34	-1.7
3,133,974	+		GFF3060	0.35	-2.1
3,134,016	-		GFF3060	0.41	-3.1
3,134,022	-		GFF3060	0.42	-1.7
3,134,029	-		GFF3060	0.44	-1.7
3,134,054	+		GFF3060	0.48	-1.8
3,134,061	+		GFF3060	0.49	-2.8
3,134,061	+		GFF3060	0.49	-1.8
3,134,061	+		GFF3060	0.49	-2.6
3,134,066	+		GFF3060	0.50	-0.7
3,134,069	-		GFF3060	0.50	-1.3
3,134,087	+		GFF3060	0.53	-2.8
3,134,104	+		GFF3060	0.56	-2.9
3,134,117	-		GFF3060	0.58	-2.0
3,134,143	+		GFF3060	0.62	-1.5
3,134,143	+		GFF3060	0.62	-2.4
3,134,148	+		GFF3060	0.63	-2.3
3,134,148	+		GFF3060	0.63	-1.6
3,134,151	-		GFF3060	0.63	-2.9
3,134,156	-		GFF3060	0.64	-2.0
3,134,166	+		GFF3060	0.66	-1.3
3,134,186	+		GFF3060	0.69	+0.1
3,134,186	+		GFF3060	0.69	-2.4
3,134,194	-		GFF3060	0.70	-3.4
3,134,194	-		GFF3060	0.70	-2.7
3,134,201	-		GFF3060	0.72	-1.7
3,134,203	+		GFF3060	0.72	-2.1
3,134,218	-		GFF3060	0.74	-2.3
3,134,229	+		GFF3060	0.76	-1.3
3,134,275	-		GFF3060	0.84	-1.8
3,134,300	-		GFF3060	0.88	-2.0
3,134,334	+				-1.2
3,134,345	-				-2.7
3,134,347	-				-1.2
3,134,347	-				-1.2
3,134,360	+				-3.2
3,134,383	-				-0.8
3,134,383	-				-2.3
3,134,397	+				+0.5
3,134,405	-				-2.0
3,134,407	+				+0.7
3,134,407	+				+0.2
3,134,407	+				+0.4
3,134,407	+				-0.3
3,134,415	-				-0.8
3,134,415	-				+0.4
3,134,436	-				-0.5
3,134,436	-				-0.1
3,134,438	+				-0.5
3,134,438	+				-0.4
3,134,486	+				-0.9
3,134,493	+				-0.9
3,134,493	+				-1.7
3,134,510	+				-1.8
3,134,516	+				-3.3
3,134,518	-				-3.0
3,134,520	+				-1.2
3,134,528	-				-3.1
3,134,530	+				-1.8
3,134,530	+				-1.3
3,134,580	+		GFF3061	0.16	-4.7
3,134,583	-		GFF3061	0.16	-2.5
3,134,654	+		GFF3061	0.26	-1.2
3,134,654	+		GFF3061	0.26	-2.4
3,134,654	+		GFF3061	0.26	-1.6
3,134,657	-		GFF3061	0.26	-1.6
3,134,673	-		GFF3061	0.28	-1.2
3,134,677	+		GFF3061	0.29	-1.8
3,134,685	-		GFF3061	0.30	-0.8
3,134,685	-		GFF3061	0.30	-1.3
3,134,704	-		GFF3061	0.33	-2.0
3,134,744	+		GFF3061	0.38	-1.9
3,134,744	+		GFF3061	0.38	-1.1
3,134,744	+		GFF3061	0.38	-2.8
3,134,744	+		GFF3061	0.38	-3.1
3,134,744	+		GFF3061	0.38	-2.8
3,134,744	+		GFF3061	0.38	-2.4
3,134,752	-		GFF3061	0.39	-2.0
3,134,752	-		GFF3061	0.39	-4.1
3,134,752	-		GFF3061	0.39	-1.6
3,134,752	-		GFF3061	0.39	-2.3
3,134,752	-		GFF3061	0.39	-2.2
3,134,752	-		GFF3061	0.39	-1.5
3,134,752	-		GFF3061	0.39	-1.0
3,134,752	-		GFF3061	0.39	-2.5
3,134,770	+		GFF3061	0.41	-0.6
3,134,772	+		GFF3061	0.42	-2.1
3,134,778	-		GFF3061	0.43	-2.1
3,134,805	+		GFF3061	0.46	-2.4
3,134,956	-		GFF3061	0.67	-1.9
3,134,966	-		GFF3061	0.68	-1.8
3,134,986	+		GFF3061	0.71	-3.0
3,134,988	+		GFF3061	0.71	-2.1
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-0.6
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	-2.6
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	-2.9
3,134,988	+		GFF3061	0.71	-1.2
3,134,988	+		GFF3061	0.71	-1.2
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-2.1
3,134,988	+		GFF3061	0.71	-1.6
3,134,988	+		GFF3061	0.71	-1.7
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	+0.0
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-2.3
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-2.7
3,134,994	-		GFF3061	0.72	-1.3
3,134,995	+		GFF3061	0.72	-2.5
3,134,996	-		GFF3061	0.72	-2.3
3,134,996	-		GFF3061	0.72	-1.5
3,134,996	-		GFF3061	0.72	-2.5
3,134,996	-		GFF3061	0.72	-2.4
3,134,996	-		GFF3061	0.72	-1.1
3,134,996	-		GFF3061	0.72	-2.8
3,134,996	-		GFF3061	0.72	-0.6
3,134,996	-		GFF3061	0.72	-1.9
3,134,996	-		GFF3061	0.72	-1.7
3,134,996	-		GFF3061	0.72	+1.1
3,134,996	-		GFF3061	0.72	-2.9
3,135,022	-		GFF3061	0.76	-2.5
3,135,032	+		GFF3061	0.77	-1.3
3,135,046	-		GFF3061	0.79	-1.7
3,135,091	+		GFF3061	0.85	-2.5
3,135,154	-				-2.5
3,135,162	+				-0.8
3,135,170	-				+1.0
3,135,170	-				+0.1
3,135,195	+				-2.2
3,135,196	+				-0.8
3,135,196	+				-1.4
3,135,202	+				-0.6
3,135,202	+				+0.2
3,135,212	-				+0.5
3,135,228	+				-0.2
3,135,228	+				-1.8
3,135,234	+				-2.3
3,135,234	+				-0.1
3,135,234	+				+0.2
3,135,234	+				+1.7
3,135,234	+				-0.5
3,135,234	+				-0.7
3,135,234	+				+0.3
3,135,234	+				-0.7
3,135,234	+				-1.7
3,135,234	+				-0.8
3,135,234	+				-1.2
3,135,234	+				+0.4
3,135,234	+				+0.2
3,135,234	+				+0.2
3,135,234	+				+1.4
3,135,239	+				-1.0
3,135,239	+				-1.3
3,135,239	+				+0.3
3,135,239	+				+0.3
3,135,242	-				-0.3
3,135,242	-				-0.3
3,135,242	-				+0.7
3,135,242	-				-2.0
3,135,242	-				-0.4
3,135,242	-				-1.1
3,135,242	-				+0.2
3,135,242	-				-0.3
3,135,242	-				-0.5
3,135,242	-				-0.6
3,135,242	-				+0.3
3,135,242	-				-0.7
3,135,242	-				+0.4
3,135,242	-				-0.0
3,135,242	-				+0.7
3,135,242	-				-0.0
3,135,242	-				-0.8
3,135,244	+				+0.6
3,135,247	-				-0.2
3,135,247	-				-1.3
3,135,247	-				-0.3
3,135,247	-				-1.3
3,135,247	-				-1.3
3,135,268	+				+0.8
3,135,268	+				-0.2
3,135,268	+				-0.5
3,135,274	-				+0.3
3,135,276	-				-1.8
3,135,279	+				+0.7
3,135,286	+				+0.9
3,135,287	-				-0.8
3,135,287	-				-0.1
3,135,339	+				-1.7
3,135,350	+				-2.0
3,135,358	-				-1.7
3,135,368	+				-2.3
3,135,375	+				-1.8
3,135,399	+		GFF3062	0.10	+0.4
3,135,407	-		GFF3062	0.11	-1.0
3,135,432	-		GFF3062	0.14	-1.2
3,135,435	+		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-2.1
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-2.0
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-3.3
3,135,437	-		GFF3062	0.15	-2.0
3,135,437	-		GFF3062	0.15	-2.7
3,135,443	-		GFF3062	0.16	-2.4
3,135,443	-		GFF3062	0.16	-3.1
3,135,446	-		GFF3062	0.16	-0.2
3,135,452	+		GFF3062	0.17	-2.0
3,135,485	+		GFF3062	0.21	-1.2
3,135,488	+		GFF3062	0.22	-1.8
3,135,488	+		GFF3062	0.22	-0.3
3,135,488	+		GFF3062	0.22	-2.8
3,135,488	+		GFF3062	0.22	-1.5
3,135,488	+		GFF3062	0.22	-1.3
3,135,488	+		GFF3062	0.22	-1.7
3,135,488	+		GFF3062	0.22	-0.6
3,135,488	+		GFF3062	0.22	-1.8
3,135,496	-		GFF3062	0.23	-2.3
3,135,496	-		GFF3062	0.23	-2.6
3,135,496	-		GFF3062	0.23	-3.2
3,135,496	-		GFF3062	0.23	-1.6
3,135,508	+		GFF3062	0.24	-1.7
3,135,522	-		GFF3062	0.26	-3.1
3,135,530	+		GFF3062	0.27	-1.5
3,135,532	+		GFF3062	0.27	-2.0
3,135,538	-		GFF3062	0.28	-3.7
3,135,538	-		GFF3062	0.28	-1.5
3,135,540	-		GFF3062	0.28	-1.6
3,135,542	+		GFF3062	0.29	-1.2
3,135,568	+		GFF3062	0.32	-2.6
3,135,578	+		GFF3062	0.33	-1.6
3,135,578	+		GFF3062	0.33	-1.9
3,135,578	+		GFF3062	0.33	-1.7
3,135,578	+		GFF3062	0.33	-1.8
3,135,578	+		GFF3062	0.33	-3.2
3,135,586	-		GFF3062	0.35	-0.8
3,135,586	-		GFF3062	0.35	-1.7
3,135,586	-		GFF3062	0.35	-1.2
3,135,586	-		GFF3062	0.35	-2.3
3,135,608	-		GFF3062	0.37	-0.3
3,135,620	+		GFF3062	0.39	-1.3
3,135,628	-		GFF3062	0.40	-1.5
3,135,633	-		GFF3062	0.41	-1.8
3,135,638	-		GFF3062	0.41	-1.0
3,135,693	+		GFF3062	0.48	-1.3
3,135,693	+		GFF3062	0.48	-2.3
3,135,693	+		GFF3062	0.48	-1.6
3,135,693	+		GFF3062	0.48	-0.1
3,135,693	-		GFF3062	0.48	-0.6
3,135,701	-		GFF3062	0.50	-2.1
3,135,701	-		GFF3062	0.50	-2.0
3,135,701	-		GFF3062	0.50	-4.1
3,135,720	+		GFF3062	0.52	-1.7
3,135,725	-		GFF3062	0.53	-1.5
3,135,732	-		GFF3062	0.54	-1.1
3,135,746	+		GFF3062	0.55	-2.8
3,135,746	+		GFF3062	0.55	-1.5
3,135,771	+		GFF3062	0.59	-3.3
3,135,794	-		GFF3062	0.62	-2.1
3,135,813	+		GFF3062	0.64	-0.8
3,135,831	-		GFF3062	0.67	-3.2
3,135,857	+		GFF3062	0.70	-2.7
3,135,857	+		GFF3062	0.70	-0.5
3,135,865	-		GFF3062	0.71	-1.8
3,135,865	-		GFF3062	0.71	-0.9
3,135,867	+		GFF3062	0.71	-2.3
3,135,868	+		GFF3062	0.71	-1.5
3,135,868	+		GFF3062	0.71	-1.6
3,135,869	+		GFF3062	0.72	-2.4
3,135,869	+		GFF3062	0.72	-0.9
3,135,869	+		GFF3062	0.72	-0.9
3,135,875	+		GFF3062	0.72	-2.5
3,135,875	+		GFF3062	0.72	-1.2
3,135,875	-		GFF3062	0.72	-0.5
3,135,875	-		GFF3062	0.72	-1.1
3,135,876	-		GFF3062	0.72	-1.3
3,135,877	-		GFF3062	0.73	-1.3
3,135,877	-		GFF3062	0.73	-2.0
3,135,877	-		GFF3062	0.73	-2.0
3,135,877	-		GFF3062	0.73	-2.9
3,135,888	-		GFF3062	0.74	-1.9
3,135,888	-		GFF3062	0.74	-2.0
3,135,915	-		GFF3062	0.78	-1.8
3,135,965	-		GFF3062	0.84	-2.1
3,135,970	+		GFF3062	0.85	-0.6
3,135,970	+		GFF3062	0.85	-2.3
3,135,976	+		GFF3062	0.85	-2.8
3,135,977	-		GFF3062	0.86	-2.0
3,135,978	-		GFF3062	0.86	-2.1
3,135,978	-		GFF3062	0.86	-1.6
3,135,978	-		GFF3062	0.86	-3.2
3,135,978	-		GFF3062	0.86	-2.4
3,135,978	-		GFF3062	0.86	-1.6
3,135,984	-		GFF3062	0.87	-1.9
3,135,984	-		GFF3062	0.87	-1.3
3,135,984	-		GFF3062	0.87	-1.9
3,135,984	-		GFF3062	0.87	-2.8
3,135,984	-		GFF3062	0.87	-1.3
3,135,991	+		GFF3062	0.87	-1.3
3,135,991	+		GFF3062	0.87	-2.7
3,135,991	+		GFF3062	0.87	-3.1
3,136,006	+		GFF3062	0.89	-2.3
3,136,018	+				-1.3
3,136,075	-				-1.3
3,136,154	+				+0.2
3,136,171	+				-0.3