Strain Fitness in Sphingobium sp. HT1-2 around GFF3058

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,131,901	+		GFF3056	0.48	-0.4
3,131,901	+		GFF3056	0.48	-0.4
3,131,901	+		GFF3056	0.48	+0.0
3,131,911	+		GFF3056	0.50	+0.3
3,131,944	+		GFF3056	0.54	+0.1
3,131,951	+		GFF3056	0.55	+1.5
3,131,956	+		GFF3056	0.56	+0.2
3,131,956	+		GFF3056	0.56	-1.8
3,131,956	+		GFF3056	0.56	-0.6
3,131,960	+		GFF3056	0.57	-0.3
3,131,963	-		GFF3056	0.57	-0.2
3,131,964	-		GFF3056	0.57	+0.5
3,131,964	-		GFF3056	0.57	+0.5
3,131,964	-		GFF3056	0.57	+0.8
3,131,977	-		GFF3056	0.59	+0.0
3,131,997	+		GFF3056	0.62	+0.2
3,132,005	-		GFF3056	0.63	-0.6
3,132,005	-		GFF3056	0.63	-1.3
3,132,007	-		GFF3056	0.63	-1.9
3,132,046	-		GFF3056	0.69	+1.5
3,132,068	+		GFF3056	0.72	-1.5
3,132,068	+		GFF3056	0.72	+0.7
3,132,068	+		GFF3056	0.72	-1.9
3,132,068	+		GFF3056	0.72	-0.1
3,132,068	+		GFF3056	0.72	+1.2
3,132,068	+		GFF3056	0.72	-0.6
3,132,068	+		GFF3056	0.72	-0.2
3,132,068	+		GFF3056	0.72	-0.3
3,132,068	+		GFF3056	0.72	-0.1
3,132,068	+		GFF3056	0.72	-0.3
3,132,068	+		GFF3056	0.72	+0.2
3,132,068	+		GFF3056	0.72	+0.4
3,132,076	-		GFF3056	0.73	+1.1
3,132,076	-		GFF3056	0.73	-1.3
3,132,076	-		GFF3056	0.73	-1.8
3,132,076	-		GFF3056	0.73	+0.5
3,132,076	-		GFF3056	0.73	-1.6
3,132,076	-		GFF3056	0.73	+0.7
3,132,076	-		GFF3056	0.73	-1.3
3,132,076	-		GFF3056	0.73	+0.4
3,132,076	-		GFF3056	0.73	-0.5
3,132,076	-		GFF3056	0.73	-1.5
3,132,078	+		GFF3056	0.74	-0.2
3,132,080	+		GFF3056	0.74	-1.1
3,132,088	-		GFF3056	0.75	+0.4
3,132,110	+		GFF3056	0.78	-1.7
3,132,133	+		GFF3056	0.82	-1.1
3,132,136	-		GFF3056	0.82	-2.9
3,132,138	+		GFF3056	0.82	-1.1
3,132,140	+		GFF3056	0.83	+0.4
3,132,140	+		GFF3056	0.83	-0.2
3,132,140	+		GFF3056	0.83	-1.9
3,132,140	+		GFF3056	0.83	-0.2
3,132,140	+		GFF3056	0.83	-0.6
3,132,140	+		GFF3056	0.83	-0.0
3,132,140	+		GFF3056	0.83	+1.1
3,132,140	+		GFF3056	0.83	-0.1
3,132,140	+		GFF3056	0.83	-0.4
3,132,140	+		GFF3056	0.83	+1.7
3,132,141	-		GFF3056	0.83	-0.3
3,132,145	+		GFF3056	0.83	-0.5
3,132,148	-		GFF3056	0.84	-0.3
3,132,148	-		GFF3056	0.84	+1.1
3,132,148	-		GFF3056	0.84	+0.5
3,132,150	+		GFF3056	0.84	+1.3
3,132,158	-		GFF3056	0.85	-0.9
3,132,207	-				-0.3
3,132,348	-		GFF3057	0.13	-0.6
3,132,398	+		GFF3057	0.23	+0.0
3,132,471	-		GFF3057	0.39	+0.4
3,132,483	+		GFF3057	0.41	+1.4
3,132,491	-		GFF3057	0.43	-0.3
3,132,523	-		GFF3057	0.50	+0.4
3,132,528	-		GFF3057	0.51	+1.2
3,132,556	+		GFF3057	0.57	-0.4
3,132,567	-		GFF3057	0.59	+1.2
3,132,575	+		GFF3057	0.61	-1.6
3,132,583	-		GFF3057	0.62	+1.1
3,132,593	+		GFF3057	0.64	-1.9
3,132,603	-		GFF3057	0.66	-0.3
3,132,664	+		GFF3057	0.79	-1.4
3,132,688	+		GFF3057	0.84	+1.0
3,132,696	-		GFF3057	0.86	-1.5
3,132,696	-		GFF3057	0.86	-1.2
3,132,750	+				-0.3
3,132,750	+				+0.0
3,132,750	+				-1.2
3,132,750	+				-0.2
3,132,758	-				+0.9
3,132,758	-				+0.2
3,132,758	-				-1.7
3,132,758	-				+1.1
3,132,759	-				+1.1
3,132,768	-				+0.1
3,132,772	-				-0.2
3,132,774	-				+0.4
3,132,799	+				-0.1
3,132,803	-				-0.2
3,132,804	+				-0.1
3,132,807	-				+1.2
3,132,812	+				+0.5
3,132,819	+				-0.7
3,132,821	-				-1.1
3,132,843	+				-1.8
3,132,845	+				-2.1
3,132,845	+				-1.8
3,132,847	+				-1.0
3,132,853	-				-1.5
3,132,853	-				-0.8
3,132,855	-				-1.2
3,132,855	-				-1.2
3,132,861	-				-2.5
3,132,868	+				+0.3
3,132,870	+				-3.1
3,132,881	+				-2.6
3,132,881	+				-1.5
3,132,881	+				-1.1
3,132,881	+				-1.9
3,132,889	-				-1.2
3,132,936	-		GFF3058	0.13	-1.3
3,132,936	-		GFF3058	0.13	-0.9
3,132,941	-		GFF3058	0.14	-3.4
3,132,941	-		GFF3058	0.14	-2.5
3,132,971	+		GFF3058	0.19	-3.3
3,132,972	-		GFF3058	0.19	-1.6
3,132,986	+		GFF3058	0.21	-1.5
3,133,016	+		GFF3058	0.26	-2.9
3,133,024	-		GFF3058	0.28	-2.8
3,133,039	+		GFF3058	0.30	+0.6
3,133,039	+		GFF3058	0.30	-4.0
3,133,049	+		GFF3058	0.32	-2.8
3,133,049	+		GFF3058	0.32	-1.8
3,133,057	-		GFF3058	0.33	-1.6
3,133,057	-		GFF3058	0.33	-1.8
3,133,058	-		GFF3058	0.34	-1.8
3,133,059	+		GFF3058	0.34	-0.6
3,133,063	+		GFF3058	0.34	-2.2
3,133,064	+		GFF3058	0.35	-1.7
3,133,067	-		GFF3058	0.35	-1.6
3,133,089	+		GFF3058	0.39	-2.0
3,133,092	-		GFF3058	0.39	-3.4
3,133,094	+		GFF3058	0.40	-1.6
3,133,094	+		GFF3058	0.40	-1.6
3,133,094	+		GFF3058	0.40	-1.9
3,133,094	+		GFF3058	0.40	-1.7
3,133,094	+		GFF3058	0.40	-1.8
3,133,102	-		GFF3058	0.41	-2.2
3,133,102	-		GFF3058	0.41	-1.7
3,133,102	-		GFF3058	0.41	-1.9
3,133,102	-		GFF3058	0.41	-0.6
3,133,102	-		GFF3058	0.41	-2.6
3,133,102	-		GFF3058	0.41	-2.6
3,133,102	-		GFF3058	0.41	-1.9
3,133,128	-		GFF3058	0.45	-1.6
3,133,149	+		GFF3058	0.49	-2.1
3,133,161	+		GFF3058	0.51	-1.9
3,133,169	-		GFF3058	0.52	-2.8
3,133,172	+		GFF3058	0.53	+0.6
3,133,195	+		GFF3058	0.57	-4.0
3,133,196	+		GFF3058	0.57	-2.7
3,133,196	+		GFF3058	0.57	-2.1
3,133,196	+		GFF3058	0.57	-2.0
3,133,201	+		GFF3058	0.58	-1.7
3,133,203	-		GFF3058	0.58	-1.6
3,133,204	-		GFF3058	0.58	-1.2
3,133,204	-		GFF3058	0.58	-0.6
3,133,204	-		GFF3058	0.58	-2.6
3,133,215	-		GFF3058	0.60	-1.2
3,133,217	+		GFF3058	0.61	-1.6
3,133,217	+		GFF3058	0.61	-3.6
3,133,217	+		GFF3058	0.61	-3.1
3,133,223	-		GFF3058	0.62	-2.3
3,133,225	-		GFF3058	0.62	-2.3
3,133,225	-		GFF3058	0.62	-1.2
3,133,225	-		GFF3058	0.62	-1.5
3,133,227	-		GFF3058	0.62	-2.0
3,133,227	-		GFF3058	0.62	-2.6
3,133,279	+		GFF3058	0.71	-1.9
3,133,279	+		GFF3058	0.71	-1.6
3,133,279	+		GFF3058	0.71	-2.9
3,133,279	+		GFF3058	0.71	-1.6
3,133,279	+		GFF3058	0.71	-1.2
3,133,279	+		GFF3058	0.71	-2.6
3,133,283	+		GFF3058	0.72	-2.2
3,133,284	+		GFF3058	0.72	-2.8
3,133,287	-		GFF3058	0.72	-2.2
3,133,291	-		GFF3058	0.73	-2.1
3,133,317	-		GFF3058	0.78	-2.9
3,133,319	+		GFF3058	0.78	-2.2
3,133,319	+		GFF3058	0.78	+0.4
3,133,319	+		GFF3058	0.78	-2.8
3,133,322	-		GFF3058	0.78	-1.2
3,133,327	-		GFF3058	0.79	-2.0
3,133,346	+		GFF3058	0.82	-2.6
3,133,365	+		GFF3058	0.86	-2.1
3,133,365	+		GFF3058	0.86	-2.1
3,133,365	+		GFF3058	0.86	-1.2
3,133,365	+		GFF3058	0.86	-2.1
3,133,365	+		GFF3058	0.86	-1.2
3,133,370	+		GFF3058	0.87	-2.5
3,133,373	-		GFF3058	0.87	-2.9
3,133,373	-		GFF3058	0.87	-2.4
3,133,373	-		GFF3058	0.87	-2.1
3,133,373	-		GFF3058	0.87	-2.3
3,133,373	-		GFF3058	0.87	-0.8
3,133,373	-		GFF3058	0.87	-1.8
3,133,382	+		GFF3058	0.89	-0.8
3,133,382	+		GFF3058	0.89	-1.2
3,133,382	+		GFF3058	0.89	-3.5
3,133,382	+		GFF3058	0.89	-2.3
3,133,390	-				-1.7
3,133,390	-				-1.3
3,133,390	-				-1.3
3,133,392	+				-2.7
3,133,400	-				-2.3
3,133,400	-				-1.7
3,133,400	-				+0.2
3,133,400	-				-2.8
3,133,406	+				-1.6
3,133,406	+				-1.3
3,133,406	+				-1.7
3,133,413	+				+0.2
3,133,414	-				-1.3
3,133,430	+				-1.2
3,133,430	+				+0.4
3,133,437	+				-1.7
3,133,444	-				-1.6
3,133,450	-				-1.3
3,133,475	-				-1.2
3,133,494	+				-0.2
3,133,494	+				-0.9
3,133,494	+				-0.9
3,133,494	+				-0.3
3,133,494	+				-1.0
3,133,494	+				-0.2
3,133,494	+				+0.2
3,133,494	+				+0.1
3,133,494	+				-2.7
3,133,494	+				+1.1
3,133,494	+				-0.5
3,133,494	+				-2.2
3,133,499	+				-2.6
3,133,499	+				-0.7
3,133,502	-				-2.0
3,133,502	-				+0.3
3,133,502	-				-1.6
3,133,502	-				-0.7
3,133,502	-				-0.3
3,133,502	-				+0.1
3,133,502	-				-0.8
3,133,502	-				-1.5
3,133,502	-				-0.5
3,133,502	-				-0.1
3,133,502	-				-0.3
3,133,507	-		GFF3059	0.10	-2.1
3,133,507	-		GFF3059	0.10	-2.6
3,133,512	-		GFF3059	0.12	-2.0
3,133,548	-		GFF3059	0.25	-2.4
3,133,548	-		GFF3059	0.25	-1.7
3,133,550	+		GFF3059	0.25	-1.5
3,133,550	+		GFF3059	0.25	-0.2
3,133,550	+		GFF3059	0.25	-0.7
3,133,550	+		GFF3059	0.25	-1.8
3,133,550	+		GFF3059	0.25	-2.0
3,133,550	+		GFF3059	0.25	-0.2
3,133,550	+		GFF3059	0.25	-2.7
3,133,558	-		GFF3059	0.28	-0.8
3,133,558	-		GFF3059	0.28	-2.0
3,133,558	-		GFF3059	0.28	-2.6
3,133,558	-		GFF3059	0.28	-2.4
3,133,558	-		GFF3059	0.28	-3.3
3,133,568	-		GFF3059	0.32	-1.2
3,133,575	-		GFF3059	0.34	-1.3
3,133,647	-		GFF3059	0.59	-0.4
3,133,667	-		GFF3059	0.66	-2.7
3,133,667	-		GFF3059	0.66	-0.9
3,133,667	-		GFF3059	0.66	-1.3
3,133,667	-		GFF3059	0.66	-1.1
3,133,667	-		GFF3059	0.66	-2.2
3,133,697	+		GFF3059	0.76	-1.1
3,133,697	+		GFF3059	0.76	+1.6
3,133,697	+		GFF3059	0.76	-0.5
3,133,697	+		GFF3059	0.76	-1.2
3,133,697	+		GFF3059	0.76	-3.0
3,133,697	+		GFF3059	0.76	-0.9
3,133,705	-		GFF3059	0.79	-1.6
3,133,705	-		GFF3059	0.79	-1.1
3,133,705	-		GFF3059	0.79	-2.1
3,133,705	-		GFF3059	0.79	-1.2
3,133,705	-		GFF3059	0.79	-1.2
3,133,705	-		GFF3059	0.79	-2.4
3,133,715	-		GFF3059	0.83	-0.8
3,133,715	-		GFF3059	0.83	-2.5
3,133,741	+				-0.9
3,133,744	-				-3.2
3,133,758	+				-0.3
3,133,758	+				+0.0
3,133,758	+				+0.9
3,133,758	+				-2.3
3,133,761	-				-1.5
3,133,763	+				+1.0
3,133,765	+				-0.8
3,133,765	+				-2.0
3,133,765	+				-1.7
3,133,765	+				-2.4
3,133,773	-				-2.5
3,133,775	+				-3.6
3,133,793	-				-1.2
3,133,803	-				-3.0
3,133,806	+				-0.9
3,133,806	+				-1.4
3,133,806	+				-2.5
3,133,810	+				-0.4
3,133,810	+				-1.5
3,133,810	+				-0.4
3,133,814	-				-2.9
3,133,814	-				-2.8
3,133,815	+				-1.5
3,133,815	+				-0.1
3,133,815	+				-1.9
3,133,815	+				-3.2
3,133,815	+				-2.6
3,133,815	+				-2.8
3,133,815	+				-1.2
3,133,816	-				-2.1
3,133,818	-				-3.3
3,133,818	-				-3.2
3,133,818	-				-2.8
3,133,818	-				-2.6
3,133,818	-				-1.3
3,133,820	+				-2.8
3,133,820	+				-1.1
3,133,820	+				-1.8
3,133,823	-		GFF3060	0.10	-2.1
3,133,823	-		GFF3060	0.10	-0.5
3,133,823	-		GFF3060	0.10	-0.1
3,133,823	-		GFF3060	0.10	-2.9
3,133,828	-		GFF3060	0.11	-2.7
3,133,828	-		GFF3060	0.11	-2.1
3,133,838	-		GFF3060	0.13	-2.7
3,133,885	+		GFF3060	0.20	-1.8
3,133,888	-		GFF3060	0.21	-1.7
3,133,890	+		GFF3060	0.21	-1.7
3,133,890	+		GFF3060	0.21	-1.6
3,133,890	+		GFF3060	0.21	-0.7
3,133,898	-		GFF3060	0.22	-1.9
3,133,935	+		GFF3060	0.28	-2.9
3,133,972	-		GFF3060	0.34	-1.7
3,133,974	+		GFF3060	0.35	-2.1
3,134,016	-		GFF3060	0.41	-3.1
3,134,022	-		GFF3060	0.42	-1.7
3,134,029	-		GFF3060	0.44	-1.7
3,134,054	+		GFF3060	0.48	-1.8
3,134,061	+		GFF3060	0.49	-2.8
3,134,061	+		GFF3060	0.49	-1.8
3,134,061	+		GFF3060	0.49	-2.6
3,134,066	+		GFF3060	0.50	-0.7
3,134,069	-		GFF3060	0.50	-1.3
3,134,087	+		GFF3060	0.53	-2.8
3,134,104	+		GFF3060	0.56	-2.9
3,134,117	-		GFF3060	0.58	-2.0
3,134,143	+		GFF3060	0.62	-1.5
3,134,143	+		GFF3060	0.62	-2.4
3,134,148	+		GFF3060	0.63	-2.3
3,134,148	+		GFF3060	0.63	-1.6
3,134,151	-		GFF3060	0.63	-2.9
3,134,156	-		GFF3060	0.64	-2.0
3,134,166	+		GFF3060	0.66	-1.3
3,134,186	+		GFF3060	0.69	+0.1
3,134,186	+		GFF3060	0.69	-2.4
3,134,194	-		GFF3060	0.70	-3.4
3,134,194	-		GFF3060	0.70	-2.7
3,134,201	-		GFF3060	0.72	-1.7
3,134,203	+		GFF3060	0.72	-2.1
3,134,218	-		GFF3060	0.74	-2.3
3,134,229	+		GFF3060	0.76	-1.3
3,134,275	-		GFF3060	0.84	-1.8
3,134,300	-		GFF3060	0.88	-2.0
3,134,334	+				-1.2
3,134,345	-				-2.7
3,134,347	-				-1.2
3,134,347	-				-1.2
3,134,360	+				-3.2
3,134,383	-				-0.8
3,134,383	-				-2.3
3,134,397	+				+0.5
3,134,405	-				-2.0
3,134,407	+				+0.7
3,134,407	+				+0.2
3,134,407	+				+0.4
3,134,407	+				-0.3
3,134,415	-				-0.8
3,134,415	-				+0.4
3,134,436	-				-0.5
3,134,436	-				-0.1
3,134,438	+				-0.5
3,134,438	+				-0.4