Strain Fitness in Sphingobium sp. HT1-2 around GFF3044

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,120,352	+		GFF3043	0.34	+0.3
3,120,352	+		GFF3043	0.34	-1.1
3,120,360	-		GFF3043	0.35	+0.3
3,120,360	-		GFF3043	0.35	-0.1
3,120,360	-		GFF3043	0.35	-0.3
3,120,362	+		GFF3043	0.35	-1.3
3,120,371	+		GFF3043	0.35	+0.4
3,120,379	-		GFF3043	0.36	+0.5
3,120,386	+		GFF3043	0.37	-0.8
3,120,386	+		GFF3043	0.37	+0.7
3,120,407	+		GFF3043	0.38	-1.1
3,120,421	+		GFF3043	0.39	-0.3
3,120,429	-		GFF3043	0.40	-0.5
3,120,441	+		GFF3043	0.41	+0.1
3,120,443	+		GFF3043	0.41	-1.7
3,120,443	+		GFF3043	0.41	+0.6
3,120,456	-		GFF3043	0.42	+0.1
3,120,500	+		GFF3043	0.45	+0.1
3,120,511	+		GFF3043	0.46	+0.1
3,120,511	+		GFF3043	0.46	+0.2
3,120,519	-		GFF3043	0.47	-0.7
3,120,519	-		GFF3043	0.47	+1.0
3,120,519	-		GFF3043	0.47	+0.2
3,120,519	-		GFF3043	0.47	-0.1
3,120,534	-		GFF3043	0.48	+0.2
3,120,542	+		GFF3043	0.49	+0.6
3,120,542	+		GFF3043	0.49	-0.3
3,120,543	-		GFF3043	0.49	+1.4
3,120,543	-		GFF3043	0.49	+0.5
3,120,552	+		GFF3043	0.49	-0.6
3,120,554	+		GFF3043	0.49	-1.4
3,120,554	+		GFF3043	0.49	-0.6
3,120,554	+		GFF3043	0.49	+0.2
3,120,554	+		GFF3043	0.49	-2.7
3,120,561	+		GFF3043	0.50	-0.4
3,120,562	-		GFF3043	0.50	+0.4
3,120,562	-		GFF3043	0.50	-0.6
3,120,562	-		GFF3043	0.50	-1.0
3,120,562	-		GFF3043	0.50	-0.4
3,120,562	-		GFF3043	0.50	+1.5
3,120,562	-		GFF3043	0.50	-1.4
3,120,562	-		GFF3043	0.50	-0.8
3,120,570	-		GFF3043	0.51	+0.7
3,120,572	+		GFF3043	0.51	+0.1
3,120,577	+		GFF3043	0.51	-0.2
3,120,580	-		GFF3043	0.51	+0.4
3,120,582	+		GFF3043	0.52	-0.6
3,120,582	+		GFF3043	0.52	-0.6
3,120,582	+		GFF3043	0.52	+0.4
3,120,590	-		GFF3043	0.52	+0.6
3,120,595	-		GFF3043	0.53	-1.7
3,120,598	+		GFF3043	0.53	+0.9
3,120,598	+		GFF3043	0.53	-1.7
3,120,603	+		GFF3043	0.53	+0.7
3,120,606	-		GFF3043	0.53	-0.7
3,120,613	+		GFF3043	0.54	+0.1
3,120,616	-		GFF3043	0.54	-0.5
3,120,639	-		GFF3043	0.56	-2.7
3,120,646	+		GFF3043	0.56	-0.1
3,120,677	+		GFF3043	0.59	+0.4
3,120,688	+		GFF3043	0.60	-0.5
3,120,698	+		GFF3043	0.60	+0.5
3,120,701	-		GFF3043	0.61	+0.0
3,120,707	+		GFF3043	0.61	-0.7
3,120,714	+		GFF3043	0.62	-0.4
3,120,722	+		GFF3043	0.62	-0.7
3,120,722	-		GFF3043	0.62	-1.8
3,120,722	-		GFF3043	0.62	-1.3
3,120,722	-		GFF3043	0.62	-0.9
3,120,722	-		GFF3043	0.62	+1.0
3,120,722	-		GFF3043	0.62	+0.8
3,120,722	-		GFF3043	0.62	+0.8
3,120,742	+		GFF3043	0.64	+0.0
3,120,748	+		GFF3043	0.64	-1.0
3,120,750	-		GFF3043	0.64	-1.3
3,120,750	-		GFF3043	0.64	-0.2
3,120,751	-		GFF3043	0.65	-0.4
3,120,755	-		GFF3043	0.65	+0.3
3,120,756	-		GFF3043	0.65	-0.1
3,120,766	+		GFF3043	0.66	+0.7
3,120,774	-		GFF3043	0.66	+1.1
3,120,774	-		GFF3043	0.66	-1.2
3,120,774	-		GFF3043	0.66	+1.4
3,120,791	+		GFF3043	0.68	+0.9
3,120,832	-		GFF3043	0.71	+0.2
3,120,834	+		GFF3043	0.71	-0.1
3,120,899	-		GFF3043	0.76	-2.4
3,120,936	-		GFF3043	0.79	+0.3
3,120,947	-		GFF3043	0.80	-0.9
3,120,948	-		GFF3043	0.80	-1.3
3,120,948	-		GFF3043	0.80	+1.3
3,121,004	+		GFF3043	0.84	+1.0
3,121,015	+		GFF3043	0.85	-0.3
3,121,015	+		GFF3043	0.85	-0.3
3,121,015	+		GFF3043	0.85	-1.7
3,121,023	-		GFF3043	0.85	-1.0
3,121,023	-		GFF3043	0.85	-0.7
3,121,045	+		GFF3043	0.87	-0.0
3,121,056	+		GFF3043	0.88	+0.0
3,121,056	-		GFF3043	0.88	-1.4
3,121,109	+				+1.0
3,121,117	-				-1.4
3,121,140	+				-0.6
3,121,143	+				-1.7
3,121,159	-				-0.1
3,121,168	-				-0.3
3,121,178	-				+1.7
3,121,201	-				+0.1
3,121,201	-				-0.1
3,121,201	-				+0.0
3,121,248	-				-1.0
3,121,265	-				+0.6
3,121,414	+				+0.6
3,121,422	-		GFF3044	0.11	+0.8
3,121,432	-		GFF3044	0.12	-1.1
3,121,447	-		GFF3044	0.14	-0.4
3,121,449	-		GFF3044	0.15	-1.2
3,121,528	+		GFF3044	0.26	-1.2
3,121,528	+		GFF3044	0.26	-1.4
3,121,529	-		GFF3044	0.26	-0.8
3,121,529	-		GFF3044	0.26	-0.5
3,121,530	+		GFF3044	0.27	+1.4
3,121,538	-		GFF3044	0.28	+0.2
3,121,586	+		GFF3044	0.35	-0.4
3,121,607	+		GFF3044	0.38	-1.1
3,121,704	-		GFF3044	0.53	+0.5
3,121,754	+		GFF3044	0.60	+0.7
3,121,754	+		GFF3044	0.60	+0.3
3,121,754	+		GFF3044	0.60	-0.4
3,121,764	+		GFF3044	0.61	-2.2
3,121,772	-		GFF3044	0.63	-0.6
3,121,772	-		GFF3044	0.63	+0.6
3,121,772	-		GFF3044	0.63	-2.0
3,121,772	-		GFF3044	0.63	-1.7
3,121,772	-		GFF3044	0.63	+1.3
3,121,790	+		GFF3044	0.65	-1.7
3,121,818	+		GFF3044	0.69	-1.7
3,121,828	+		GFF3044	0.71	-1.7
3,121,835	+		GFF3044	0.72	+0.1
3,121,844	+		GFF3044	0.73	+0.4
3,121,862	-		GFF3044	0.76	+1.2
3,121,864	+		GFF3044	0.76	-0.7
3,121,930	-		GFF3044	0.86	-0.3
3,121,973	-				-0.1
3,122,016	+				-0.2
3,122,016	-				-0.1
3,122,034	-				-1.2
3,122,039	+				-1.8
3,122,050	-				-0.4
3,122,056	+				+0.3
3,122,059	-				-1.7
3,122,059	-				+0.1
3,122,059	-				-0.1
3,122,068	+				-1.8
3,122,099	-				-0.0
3,122,155	-		GFF3045	0.10	-0.3
3,122,156	+		GFF3045	0.11	+0.4
3,122,158	+		GFF3045	0.11	-1.2
3,122,158	+		GFF3045	0.11	-1.5
3,122,158	+		GFF3045	0.11	-1.6
3,122,158	+		GFF3045	0.11	+0.1
3,122,158	+		GFF3045	0.11	-0.8
3,122,163	+		GFF3045	0.12	+0.4
3,122,166	-		GFF3045	0.12	+0.8
3,122,166	-		GFF3045	0.12	-1.6
3,122,166	-		GFF3045	0.12	-1.3
3,122,205	+		GFF3045	0.20	-1.1
3,122,213	-		GFF3045	0.22	-0.3
3,122,213	-		GFF3045	0.22	-0.9
3,122,213	-		GFF3045	0.22	-0.2
3,122,213	-		GFF3045	0.22	-0.3
3,122,215	+		GFF3045	0.22	-1.9
3,122,215	+		GFF3045	0.22	+0.5
3,122,220	+		GFF3045	0.23	-1.2
3,122,223	-		GFF3045	0.24	-3.1
3,122,223	-		GFF3045	0.24	-0.2
3,122,223	-		GFF3045	0.24	-2.5
3,122,233	-		GFF3045	0.26	-1.2
3,122,262	+		GFF3045	0.32	-0.3
3,122,267	+		GFF3045	0.33	-0.6
3,122,270	-		GFF3045	0.33	+0.2
3,122,272	+		GFF3045	0.34	+1.2
3,122,272	+		GFF3045	0.34	+0.4
3,122,277	+		GFF3045	0.35	-0.5
3,122,277	+		GFF3045	0.35	-2.7
3,122,277	+		GFF3045	0.35	+0.6
3,122,279	-		GFF3045	0.35	+0.0
3,122,284	+		GFF3045	0.36	+0.5
3,122,285	-		GFF3045	0.36	+1.5
3,122,354	+		GFF3045	0.50	-1.8
3,122,354	+		GFF3045	0.50	-1.6
3,122,369	+		GFF3045	0.53	-1.3
3,122,369	+		GFF3045	0.53	+0.6
3,122,377	-		GFF3045	0.54	-0.1
3,122,397	-		GFF3045	0.58	+1.7
3,122,400	+		GFF3045	0.59	-1.7
3,122,449	+		GFF3045	0.69	+0.8
3,122,495	+		GFF3045	0.78	-1.1
3,122,536	+		GFF3045	0.86	-0.3
3,122,536	+		GFF3045	0.86	+0.3
3,122,536	+		GFF3045	0.86	-1.6
3,122,536	+		GFF3045	0.86	-2.0
3,122,544	-		GFF3045	0.88	-0.7
3,122,544	-		GFF3045	0.88	-1.5
3,122,551	+		GFF3045	0.89	-0.2
3,122,551	+		GFF3045	0.89	-0.2
3,122,573	+				+1.0
3,122,602	+				+1.5
3,122,631	-				+0.3
3,122,638	+				+0.2
3,122,688	+				-0.8
3,122,696	-				-1.2
3,122,696	-				-0.1
3,122,705	+				+0.3
3,122,710	+				-0.4
3,122,718	-				-0.3
3,122,739	-				-0.8
3,122,749	+				+0.2
3,122,752	+				+0.3
3,122,765	-				+0.9
3,122,771	+				+0.4
3,122,782	+				-1.8
3,122,782	+				-0.1
3,122,787	+				+0.1
3,122,817	+				-2.3
3,122,833	+				-1.0
3,122,836	-				-1.6
3,122,836	-				+0.3
3,122,855	+		GFF3046	0.11	-1.4
3,122,872	-		GFF3046	0.13	-0.4
3,122,885	+		GFF3046	0.14	-1.3
3,122,894	-		GFF3046	0.16	-0.1
3,122,895	+		GFF3046	0.16	+0.2
3,122,908	-		GFF3046	0.17	-0.3
3,122,908	-		GFF3046	0.17	-1.4
3,122,921	+		GFF3046	0.19	-1.1
3,122,980	+		GFF3046	0.26	+0.2
3,122,981	+		GFF3046	0.26	-0.4
3,122,981	+		GFF3046	0.26	-1.3
3,122,981	+		GFF3046	0.26	-0.2
3,122,981	+		GFF3046	0.26	-1.2
3,122,989	-		GFF3046	0.27	+0.1
3,122,989	-		GFF3046	0.27	-1.6
3,122,989	-		GFF3046	0.27	-0.2
3,122,989	-		GFF3046	0.27	-1.3
3,122,989	-		GFF3046	0.27	-0.0
3,122,989	-		GFF3046	0.27	-0.2
3,122,989	-		GFF3046	0.27	-2.0
3,123,006	+		GFF3046	0.29	-3.0
3,123,013	+		GFF3046	0.30	+0.4
3,123,013	+		GFF3046	0.30	+0.2
3,123,013	+		GFF3046	0.30	+0.2
3,123,013	+		GFF3046	0.30	-1.1
3,123,013	+		GFF3046	0.30	+0.3
3,123,013	+		GFF3046	0.30	-0.3
3,123,021	-		GFF3046	0.31	-0.6
3,123,021	-		GFF3046	0.31	-1.2