Strain Fitness in Sphingobium sp. HT1-2 around GFF3036

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,109,118	+		GFF3033	0.74	-0.7
3,109,118	+		GFF3033	0.74	-0.7
3,109,118	+		GFF3033	0.74	+0.2
3,109,126	-		GFF3033	0.75	-1.1
3,109,178	-		GFF3033	0.84	+1.1
3,109,218	+				+0.1
3,109,254	-				+0.6
3,109,274	+				-3.6
3,109,282	-				-0.4
3,109,282	-				-0.6
3,109,287	-				+0.4
3,109,299	-				+1.2
3,109,309	-		GFF3034	0.10	+0.9
3,109,311	-		GFF3034	0.11	-0.3
3,109,320	+		GFF3034	0.13	+0.1
3,109,320	+		GFF3034	0.13	+0.3
3,109,328	-		GFF3034	0.15	-1.4
3,109,328	-		GFF3034	0.15	+0.7
3,109,333	-		GFF3034	0.16	+1.4
3,109,337	-		GFF3034	0.17	-0.7
3,109,351	+		GFF3034	0.20	+0.8
3,109,354	-		GFF3034	0.21	-1.1
3,109,357	-		GFF3034	0.21	+1.3
3,109,362	-		GFF3034	0.23	+2.0
3,109,364	-		GFF3034	0.23	-0.7
3,109,410	+		GFF3034	0.34	-0.9
3,109,432	+		GFF3034	0.39	-0.9
3,109,433	-		GFF3034	0.39	-0.7
3,109,433	-		GFF3034	0.39	+0.1
3,109,433	-		GFF3034	0.39	-0.9
3,109,433	-		GFF3034	0.39	+0.3
3,109,437	+		GFF3034	0.40	-0.7
3,109,499	+		GFF3034	0.54	+0.2
3,109,499	+		GFF3034	0.54	+0.7
3,109,499	+		GFF3034	0.54	-1.2
3,109,499	+		GFF3034	0.54	-1.3
3,109,499	+		GFF3034	0.54	+0.8
3,109,499	+		GFF3034	0.54	+0.5
3,109,499	+		GFF3034	0.54	-2.3
3,109,507	-		GFF3034	0.56	+1.8
3,109,507	-		GFF3034	0.56	+1.1
3,109,507	-		GFF3034	0.56	-1.3
3,109,507	-		GFF3034	0.56	-0.2
3,109,507	-		GFF3034	0.56	-1.2
3,109,507	-		GFF3034	0.56	-0.0
3,109,507	-		GFF3034	0.56	-0.7
3,109,507	-		GFF3034	0.56	-0.7
3,109,507	-		GFF3034	0.56	-0.1
3,109,507	-		GFF3034	0.56	+0.1
3,109,507	-		GFF3034	0.56	+1.3
3,109,532	+		GFF3034	0.62	-1.1
3,109,542	+		GFF3034	0.64	+0.0
3,109,550	-		GFF3034	0.66	+0.4
3,109,562	-		GFF3034	0.69	-1.2
3,109,571	+		GFF3034	0.71	+0.9
3,109,583	+		GFF3034	0.73	+0.6
3,109,583	+		GFF3034	0.73	+0.1
3,109,584	-		GFF3034	0.74	-0.2
3,109,590	-		GFF3034	0.75	-1.1
3,109,619	+		GFF3034	0.82	+1.7
3,109,706	-				+0.9
3,109,746	-		GFF3035	0.11	-1.2
3,109,759	+		GFF3035	0.14	+0.1
3,109,797	-		GFF3035	0.24	+0.2
3,109,802	+		GFF3035	0.25	-1.2
3,109,817	+		GFF3035	0.29	+1.0
3,109,832	+		GFF3035	0.33	+1.4
3,109,832	+		GFF3035	0.33	+0.1
3,109,832	+		GFF3035	0.33	-1.2
3,109,832	+		GFF3035	0.33	-0.4
3,109,840	-		GFF3035	0.35	-0.2
3,109,840	-		GFF3035	0.35	+0.5
3,109,840	-		GFF3035	0.35	+0.9
3,109,840	-		GFF3035	0.35	-1.9
3,109,840	-		GFF3035	0.35	+0.2
3,109,840	-		GFF3035	0.35	-0.4
3,109,840	-		GFF3035	0.35	+0.4
3,109,840	-		GFF3035	0.35	-0.3
3,109,845	-		GFF3035	0.36	+0.6
3,109,845	-		GFF3035	0.36	-1.3
3,109,871	+		GFF3035	0.42	+0.4
3,109,872	+		GFF3035	0.43	+1.3
3,109,879	+		GFF3035	0.44	-0.4
3,109,880	-		GFF3035	0.45	+0.0
3,109,881	+		GFF3035	0.45	+0.0
3,109,889	-		GFF3035	0.47	+0.2
3,109,903	-		GFF3035	0.50	+0.9
3,109,903	-		GFF3035	0.50	+0.3
3,109,927	+		GFF3035	0.56	-1.9
3,109,950	+		GFF3035	0.62	-0.7
3,109,950	+		GFF3035	0.62	-0.3
3,109,961	+		GFF3035	0.65	-2.3
3,109,977	-		GFF3035	0.69	-0.7
3,109,977	-		GFF3035	0.69	+0.4
3,109,986	-		GFF3035	0.71	+0.7
3,110,011	+		GFF3035	0.77	-0.2
3,110,019	-		GFF3035	0.79	+0.9
3,110,040	+		GFF3035	0.84	-1.1
3,110,047	-		GFF3035	0.86	-0.6
3,110,051	+		GFF3035	0.87	+1.5
3,110,051	+		GFF3035	0.87	-0.7
3,110,059	-		GFF3035	0.89	-1.9
3,110,100	+				+0.6
3,110,100	+				-1.3
3,110,102	+				-0.3
3,110,102	+				+0.1
3,110,105	+				+0.5
3,110,108	-				-1.1
3,110,108	-				+0.2
3,110,110	-				+0.4
3,110,116	+				+1.0
3,110,117	+				-1.3
3,110,125	-				-1.7
3,110,127	+				-2.6
3,110,127	+				-0.8
3,110,133	+				-0.3
3,110,135	+				-0.2
3,110,141	-				-2.2
3,110,141	-				-1.9
3,110,141	-				-1.4
3,110,141	-				-1.2
3,110,143	-		GFF3036	0.10	-0.2
3,110,152	+		GFF3036	0.12	-1.2
3,110,155	-		GFF3036	0.13	-0.2
3,110,155	-		GFF3036	0.13	-1.4
3,110,174	-		GFF3036	0.18	+0.3
3,110,187	-		GFF3036	0.22	-1.4
3,110,188	+		GFF3036	0.22	-0.7
3,110,229	+		GFF3036	0.33	-1.4
3,110,229	+		GFF3036	0.33	+1.6
3,110,229	+		GFF3036	0.33	-0.3
3,110,234	+		GFF3036	0.34	-1.3
3,110,234	+		GFF3036	0.34	-1.7
3,110,237	-		GFF3036	0.35	+0.4
3,110,242	-		GFF3036	0.36	-0.4
3,110,242	-		GFF3036	0.36	-0.5
3,110,252	-		GFF3036	0.39	-1.3
3,110,254	+		GFF3036	0.39	+0.7
3,110,255	+		GFF3036	0.39	+1.1
3,110,264	+		GFF3036	0.42	-0.7
3,110,264	+		GFF3036	0.42	+0.4
3,110,266	+		GFF3036	0.42	-1.0
3,110,272	-		GFF3036	0.44	+0.5
3,110,272	-		GFF3036	0.44	-0.3
3,110,272	-		GFF3036	0.44	+0.1
3,110,274	+		GFF3036	0.44	-0.8
3,110,274	+		GFF3036	0.44	+0.1
3,110,282	-		GFF3036	0.46	+0.3
3,110,282	-		GFF3036	0.46	+0.1
3,110,284	+		GFF3036	0.47	-0.1
3,110,284	+		GFF3036	0.47	-1.9
3,110,286	+		GFF3036	0.48	+0.6
3,110,327	-		GFF3036	0.58	-1.3
3,110,337	-		GFF3036	0.61	+0.4
3,110,364	+		GFF3036	0.68	-0.0
3,110,369	+		GFF3036	0.69	+0.4
3,110,374	+		GFF3036	0.71	+0.6
3,110,374	+		GFF3036	0.71	+0.1
3,110,374	+		GFF3036	0.71	+0.3
3,110,374	+		GFF3036	0.71	-1.7
3,110,377	-		GFF3036	0.71	-0.5
3,110,377	-		GFF3036	0.71	-0.5
3,110,377	-		GFF3036	0.71	-1.4
3,110,381	+		GFF3036	0.72	+0.4
3,110,381	+		GFF3036	0.72	-0.3
3,110,382	-		GFF3036	0.73	+1.0
3,110,382	-		GFF3036	0.73	+0.1
3,110,382	-		GFF3036	0.73	-0.8
3,110,383	-		GFF3036	0.73	-0.9
3,110,386	+		GFF3036	0.74	-1.7
3,110,386	+		GFF3036	0.74	-0.4
3,110,386	+		GFF3036	0.74	-1.0
3,110,386	+		GFF3036	0.74	+1.3
3,110,389	-		GFF3036	0.75	-0.1
3,110,389	-		GFF3036	0.75	+0.6
3,110,389	-		GFF3036	0.75	+0.1
3,110,389	-		GFF3036	0.75	+1.3
3,110,394	-		GFF3036	0.76	+1.5
3,110,394	-		GFF3036	0.76	-0.3
3,110,394	-		GFF3036	0.76	-0.3
3,110,406	-		GFF3036	0.79	-0.5
3,110,417	+		GFF3036	0.82	-0.6
3,110,417	-		GFF3036	0.82	-1.1
3,110,417	-		GFF3036	0.82	-0.6
3,110,417	-		GFF3036	0.82	+2.0
3,110,417	-		GFF3036	0.82	+0.4
3,110,429	+		GFF3036	0.85	+0.9
3,110,429	+		GFF3036	0.85	+0.2
3,110,429	+		GFF3036	0.85	+0.1
3,110,429	+		GFF3036	0.85	+1.0
3,110,437	-		GFF3036	0.87	+0.9
3,110,439	-		GFF3036	0.88	-1.9
3,110,442	-		GFF3036	0.88	-0.2
3,110,469	+				+1.6
3,110,477	-				-0.8
3,110,501	-				-0.4
3,110,501	-				+0.8
3,110,506	+				+0.3
3,110,563	-				-1.7
3,110,565	-				+0.1
3,110,653	+				-0.7
3,110,653	+				-0.7
3,110,655	+				+0.4
3,110,694	+				-0.1
3,110,694	+				-1.2
3,110,720	+				-0.5
3,110,720	+				-1.1
3,110,720	+				-0.4
3,110,720	+				+0.6
3,110,720	+				+1.2
3,110,720	+				+0.4
3,110,721	-				-0.1
3,110,728	-				-2.0
3,110,730	+				+0.3
3,110,730	+				-0.9
3,110,730	+				+0.7
3,110,730	+				+0.2
3,110,730	+				+1.0
3,110,730	+				-1.4
3,110,730	+				+0.0
3,110,730	+				-1.6
3,110,730	+				+0.5
3,110,730	+				+0.0
3,110,733	-				-2.3
3,110,733	-				-1.1
3,110,735	+				-0.8
3,110,738	-				-0.4
3,110,738	-				+0.7
3,110,738	-				-0.4
3,110,738	-				-0.6
3,110,738	-				+0.1
3,110,738	-				+0.8
3,110,738	-				-1.2
3,110,738	-				-0.9
3,110,738	-				-0.6
3,110,744	-				+1.6
3,110,748	+				-1.4
3,110,748	+				-0.3
3,110,748	+				-0.6
3,110,748	+				-1.3
3,110,748	+				-0.3
3,110,748	+				+0.2
3,110,756	+				-2.4
3,110,756	-				+0.7
3,110,756	-				-0.4
3,110,756	-				+1.4
3,110,756	-				+1.8
3,110,756	-				+0.8
3,110,756	-				-1.2
3,110,756	-				+0.3
3,110,762	-				+0.1
3,110,763	+				+0.6
3,110,763	+				+0.8
3,110,763	-				-2.1
3,110,764	-				-1.3
3,110,764	-				+0.4
3,110,788	+				+0.3
3,110,819	-				+0.3
3,110,835	+				+0.4
3,110,835	+				-1.1
3,110,851	+				-1.7
3,110,867	+				+0.9
3,110,874	-				+0.7
3,110,891	+				-1.0
3,110,938	+				+0.1
3,110,938	+				+0.3
3,110,938	+				+1.1
3,111,000	-				+0.0
3,111,013	+				+0.4
3,111,073	+				-1.0
3,111,117	-				+0.1
3,111,129	+				-2.4
3,111,145	-				-2.0
3,111,148	+				-0.3
3,111,148	+				+0.3
3,111,155	-				-0.7
3,111,173	-				+0.5
3,111,176	+				+0.9
3,111,180	+				+1.0
3,111,180	+				-1.7
3,111,189	-				-0.2
3,111,190	+				-1.8
3,111,197	+				-2.1
3,111,197	+				-0.2
3,111,197	+				-0.9
3,111,198	-				+0.8
3,111,205	-				-0.3
3,111,232	+				-0.3
3,111,240	-				-0.2
3,111,242	+				-1.4
3,111,264	-				+0.7
3,111,274	-				+0.3
3,111,290	+				+0.4
3,111,295	+				-0.7
3,111,303	-				+0.2
3,111,303	-				-1.5
3,111,314	-				-0.2
3,111,410	-		GFF3037	0.13	-0.6
3,111,410	-		GFF3037	0.13	+1.4
3,111,424	+		GFF3037	0.14	+1.0
3,111,424	+		GFF3037	0.14	-1.3
3,111,447	+		GFF3037	0.15	+0.9
3,111,457	+		GFF3037	0.15	-0.9