Strain Fitness in Sphingobium sp. HT1-2 around GFF3030

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,104,695	+		GFF3029	0.54	-2.3
3,104,700	+		GFF3029	0.54	-2.1
3,104,729	+		GFF3029	0.56	-1.6
3,104,744	+		GFF3029	0.56	-1.6
3,104,752	-		GFF3029	0.57	+1.0
3,104,781	+		GFF3029	0.58	+0.3
3,104,786	+		GFF3029	0.59	-1.2
3,104,786	+		GFF3029	0.59	-1.1
3,104,794	-		GFF3029	0.59	-0.2
3,104,794	-		GFF3029	0.59	+0.0
3,104,795	+		GFF3029	0.59	-1.8
3,104,799	-		GFF3029	0.59	-0.4
3,104,799	-		GFF3029	0.59	+0.7
3,104,826	+		GFF3029	0.60	-2.3
3,104,826	+		GFF3029	0.60	+0.2
3,104,831	+		GFF3029	0.61	+1.3
3,104,834	-		GFF3029	0.61	+0.2
3,104,860	+		GFF3029	0.62	+0.3
3,104,868	-		GFF3029	0.63	-1.3
3,104,891	-		GFF3029	0.64	+0.4
3,104,913	-		GFF3029	0.65	-0.2
3,104,931	+		GFF3029	0.66	-2.3
3,104,934	-		GFF3029	0.66	-0.4
3,104,936	+		GFF3029	0.66	+1.3
3,104,936	+		GFF3029	0.66	-2.6
3,104,936	+		GFF3029	0.66	-0.1
3,104,939	-		GFF3029	0.66	+0.8
3,104,944	-		GFF3029	0.66	+0.8
3,104,944	-		GFF3029	0.66	+0.0
3,104,944	-		GFF3029	0.66	+1.1
3,104,944	-		GFF3029	0.66	+0.9
3,104,944	-		GFF3029	0.66	-0.3
3,104,944	-		GFF3029	0.66	-2.4
3,104,944	-		GFF3029	0.66	+1.2
3,104,946	+		GFF3029	0.66	-0.4
3,104,956	+		GFF3029	0.67	+0.9
3,104,965	+		GFF3029	0.67	-1.0
3,104,984	+		GFF3029	0.68	-1.3
3,104,985	+		GFF3029	0.68	-0.2
3,104,988	-		GFF3029	0.68	+0.7
3,104,992	-		GFF3029	0.69	-0.6
3,104,993	-		GFF3029	0.69	-1.7
3,104,993	-		GFF3029	0.69	+0.1
3,104,997	+		GFF3029	0.69	-1.8
3,104,997	+		GFF3029	0.69	+0.0
3,105,009	-		GFF3029	0.69	-1.7
3,105,037	+		GFF3029	0.71	+0.3
3,105,039	-		GFF3029	0.71	-0.4
3,105,054	-		GFF3029	0.72	+1.4
3,105,056	+		GFF3029	0.72	-1.6
3,105,064	-		GFF3029	0.72	-0.6
3,105,066	+		GFF3029	0.72	-0.3
3,105,066	+		GFF3029	0.72	-0.2
3,105,066	+		GFF3029	0.72	-1.1
3,105,069	-		GFF3029	0.72	+0.3
3,105,074	-		GFF3029	0.73	-0.2
3,105,074	-		GFF3029	0.73	-0.0
3,105,074	-		GFF3029	0.73	-1.3
3,105,079	-		GFF3029	0.73	-0.1
3,105,080	+		GFF3029	0.73	-1.0
3,105,154	-		GFF3029	0.76	-0.4
3,105,170	-		GFF3029	0.77	-0.6
3,105,179	-		GFF3029	0.78	+1.0
3,105,192	-		GFF3029	0.78	-3.0
3,105,214	-		GFF3029	0.79	-1.2
3,105,225	+		GFF3029	0.80	+1.7
3,105,225	+		GFF3029	0.80	+0.0
3,105,232	+		GFF3029	0.80	-1.2
3,105,233	-		GFF3029	0.80	+0.1
3,105,256	+		GFF3029	0.81	-2.4
3,105,269	-		GFF3029	0.82	-0.9
3,105,275	-		GFF3029	0.82	+1.4
3,105,279	-		GFF3029	0.83	-2.1
3,105,304	+		GFF3029	0.84	-0.2
3,105,309	+		GFF3029	0.84	-0.1
3,105,309	+		GFF3029	0.84	-0.6
3,105,309	+		GFF3029	0.84	-0.3
3,105,312	-		GFF3029	0.84	-0.3
3,105,312	-		GFF3029	0.84	-1.3
3,105,318	+		GFF3029	0.85	-1.3
3,105,318	+		GFF3029	0.85	+0.7
3,105,319	+		GFF3029	0.85	-0.6
3,105,319	-		GFF3029	0.85	-0.6
3,105,326	-		GFF3029	0.85	-0.7
3,105,333	+		GFF3029	0.85	-0.9
3,105,333	+		GFF3029	0.85	+0.1
3,105,333	+		GFF3029	0.85	-0.7
3,105,338	+		GFF3029	0.85	+1.1
3,105,344	+		GFF3029	0.86	-1.5
3,105,352	-		GFF3029	0.86	+0.7
3,105,372	+		GFF3029	0.87	-0.6
3,105,375	-		GFF3029	0.87	-1.3
3,105,390	+		GFF3029	0.88	-0.0
3,105,390	+		GFF3029	0.88	-0.0
3,105,413	+		GFF3029	0.89	+0.6
3,105,424	+		GFF3029	0.90	+0.2
3,105,460	+				+0.1
3,105,466	+				+0.9
3,105,468	-				+0.4
3,105,470	+				+1.3
3,105,481	+				+0.2
3,105,502	-				-0.2
3,105,541	+				-1.3
3,105,541	+				-1.4
3,105,549	-				-0.3
3,105,550	-				+0.4
3,105,550	-				+1.0
3,105,564	+				-0.6
3,105,564	+				+0.3
3,105,570	-				+0.3
3,105,572	-				-0.8
3,105,572	-				+0.8
3,105,608	+				-0.9
3,105,612	+				-0.2
3,105,644	+				+0.7
3,105,644	+				+0.6
3,105,655	+				+1.8
3,105,663	-				-0.6
3,105,665	-				-0.2
3,105,677	-				+1.3
3,105,678	-				-0.3
3,105,737	-		GFF3030	0.28	-1.7
3,105,741	+		GFF3030	0.31	-0.1
3,105,744	-		GFF3030	0.33	+0.5
3,105,755	+		GFF3030	0.40	+0.3
3,105,759	+		GFF3030	0.42	-1.7
3,105,773	-		GFF3030	0.51	-0.2
3,105,788	-		GFF3030	0.60	-2.1
3,105,818	+		GFF3030	0.79	-0.7
3,105,836	-				-2.2
3,105,843	+				+0.4
3,105,857	+				-1.9
3,105,895	+				-0.9
3,105,895	+				+0.6
3,105,895	+				+0.5
3,105,895	+				-0.2
3,105,895	+				+0.3
3,105,897	+				+0.8
3,105,903	-				+0.3
3,105,903	-				-1.0
3,105,903	-				+0.0
3,105,903	-				-1.9
3,105,903	-				-0.2
3,105,922	-				+0.7
3,105,929	-				-0.7
3,105,947	-				-0.3
3,105,947	-				-0.9
3,105,961	-				+0.7
3,105,971	-				+0.3
3,105,972	+				+0.3
3,105,982	-				-0.2
3,105,982	-				-0.1
3,105,982	-				-1.9
3,105,990	-				-0.4
3,106,004	+				+0.1
3,106,004	+				-1.2
3,106,010	-				-1.4
3,106,010	-				-0.3
3,106,016	-				-0.4
3,106,016	-				-2.6
3,106,074	+				-1.6
3,106,082	-				-0.2
3,106,121	+				-0.9
3,106,161	+				-1.1
3,106,169	-		GFF3031	0.11	-0.3
3,106,171	+		GFF3031	0.11	-0.6
3,106,190	-		GFF3031	0.13	-0.7
3,106,234	+		GFF3031	0.18	-0.2
3,106,237	-		GFF3031	0.18	-1.3
3,106,239	+		GFF3031	0.19	+0.6
3,106,257	-		GFF3031	0.21	+0.4
3,106,257	-		GFF3031	0.21	+1.0
3,106,262	-		GFF3031	0.21	-2.4
3,106,267	-		GFF3031	0.22	+0.1
3,106,267	-		GFF3031	0.22	+0.5
3,106,272	+		GFF3031	0.22	+0.5
3,106,275	-		GFF3031	0.23	+0.5
3,106,303	-		GFF3031	0.26	-0.9
3,106,329	+		GFF3031	0.29	-1.8
3,106,329	+		GFF3031	0.29	-1.4
3,106,329	+		GFF3031	0.29	-0.2
3,106,337	-		GFF3031	0.30	-0.1
3,106,339	+		GFF3031	0.30	-0.7
3,106,339	+		GFF3031	0.30	-0.1
3,106,339	+		GFF3031	0.30	-1.6
3,106,339	+		GFF3031	0.30	-0.9
3,106,339	+		GFF3031	0.30	-1.9
3,106,347	-		GFF3031	0.31	-1.6
3,106,347	-		GFF3031	0.31	-0.1
3,106,347	-		GFF3031	0.31	-2.2
3,106,347	-		GFF3031	0.31	-1.7
3,106,347	-		GFF3031	0.31	-0.1
3,106,382	-		GFF3031	0.35	-0.2
3,106,413	+		GFF3031	0.39	-3.0
3,106,418	-		GFF3031	0.39	-1.6
3,106,444	+		GFF3031	0.42	+0.8
3,106,444	+		GFF3031	0.42	+0.7
3,106,444	+		GFF3031	0.42	+1.3
3,106,449	+		GFF3031	0.43	-1.4
3,106,451	+		GFF3031	0.43	-0.2
3,106,451	+		GFF3031	0.43	-2.6
3,106,452	-		GFF3031	0.43	-2.3
3,106,457	+		GFF3031	0.44	-1.3
3,106,457	+		GFF3031	0.44	-0.6
3,106,457	+		GFF3031	0.44	-1.7
3,106,457	+		GFF3031	0.44	+1.0
3,106,465	-		GFF3031	0.45	-1.8
3,106,465	-		GFF3031	0.45	+1.0
3,106,465	-		GFF3031	0.45	-0.6
3,106,465	-		GFF3031	0.45	-0.2
3,106,498	+		GFF3031	0.48	-1.6
3,106,498	+		GFF3031	0.48	-1.7
3,106,521	+		GFF3031	0.51	-0.3
3,106,523	+		GFF3031	0.51	+0.9
3,106,523	+		GFF3031	0.51	+0.3
3,106,531	-		GFF3031	0.52	+1.3
3,106,531	-		GFF3031	0.52	-1.8
3,106,531	-		GFF3031	0.52	-0.2
3,106,531	-		GFF3031	0.52	-2.3
3,106,540	-		GFF3031	0.53	-0.6
3,106,571	+		GFF3031	0.57	-0.8
3,106,576	+		GFF3031	0.57	-0.1
3,106,578	+		GFF3031	0.58	-0.4
3,106,580	-		GFF3031	0.58	-0.2
3,106,586	-		GFF3031	0.58	+0.3
3,106,622	+		GFF3031	0.63	+1.1
3,106,622	+		GFF3031	0.63	+0.5
3,106,630	-		GFF3031	0.63	+1.6
3,106,695	+		GFF3031	0.71	+0.6
3,106,709	+		GFF3031	0.73	-1.2
3,106,712	-		GFF3031	0.73	-1.7
3,106,713	-		GFF3031	0.73	-0.7
3,106,742	+		GFF3031	0.76	+0.4
3,106,750	-		GFF3031	0.77	+0.1
3,106,755	+		GFF3031	0.78	+0.9
3,106,755	+		GFF3031	0.78	+0.3
3,106,755	+		GFF3031	0.78	-0.8
3,106,757	+		GFF3031	0.78	-0.7
3,106,757	+		GFF3031	0.78	+0.2
3,106,757	+		GFF3031	0.78	-1.1
3,106,757	+		GFF3031	0.78	+0.5
3,106,757	+		GFF3031	0.78	+0.7
3,106,757	+		GFF3031	0.78	-0.3
3,106,757	+		GFF3031	0.78	-2.1
3,106,763	-		GFF3031	0.79	-0.2
3,106,763	-		GFF3031	0.79	-0.6
3,106,765	-		GFF3031	0.79	-1.6
3,106,765	-		GFF3031	0.79	-1.4
3,106,789	+		GFF3031	0.82	-0.8
3,106,808	-		GFF3031	0.84	-1.7