Strain Fitness in Sphingobium sp. HT1-2 around GFF3029

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,102,590	+		GFF3028	0.34	+0.7
3,102,600	+		GFF3028	0.34	+0.0
3,102,613	+		GFF3028	0.35	-0.4
3,102,614	-		GFF3028	0.35	+0.8
3,102,614	-		GFF3028	0.35	-0.4
3,102,670	+		GFF3028	0.39	-0.2
3,102,675	+		GFF3028	0.39	-0.9
3,102,699	-		GFF3028	0.41	+0.2
3,102,729	+		GFF3028	0.43	-0.7
3,102,729	+		GFF3028	0.43	-0.9
3,102,729	+		GFF3028	0.43	-1.7
3,102,735	-		GFF3028	0.43	-0.4
3,102,735	-		GFF3028	0.43	+1.1
3,102,737	+		GFF3028	0.43	+0.3
3,102,737	-		GFF3028	0.43	+0.4
3,102,737	-		GFF3028	0.43	+0.4
3,102,737	-		GFF3028	0.43	-0.1
3,102,737	-		GFF3028	0.43	-0.6
3,102,737	-		GFF3028	0.43	-0.5
3,102,739	+		GFF3028	0.43	-0.4
3,102,745	-		GFF3028	0.44	-2.6
3,102,747	-		GFF3028	0.44	+0.4
3,102,747	-		GFF3028	0.44	-0.8
3,102,747	-		GFF3028	0.44	-0.1
3,102,747	-		GFF3028	0.44	+0.9
3,102,747	-		GFF3028	0.44	+0.1
3,102,747	-		GFF3028	0.44	+0.9
3,102,747	-		GFF3028	0.44	+0.4
3,102,748	-		GFF3028	0.44	+0.8
3,102,755	+		GFF3028	0.45	-0.1
3,102,772	+		GFF3028	0.46	+0.9
3,102,777	+		GFF3028	0.46	-0.6
3,102,777	+		GFF3028	0.46	-0.5
3,102,777	+		GFF3028	0.46	+0.4
3,102,777	+		GFF3028	0.46	-0.3
3,102,777	+		GFF3028	0.46	-0.3
3,102,777	+		GFF3028	0.46	-0.4
3,102,777	+		GFF3028	0.46	-0.2
3,102,780	-		GFF3028	0.46	+1.1
3,102,793	+		GFF3028	0.47	-0.1
3,102,801	-		GFF3028	0.48	-1.0
3,102,801	-		GFF3028	0.48	-1.2
3,102,806	-		GFF3028	0.48	-0.2
3,102,825	-		GFF3028	0.49	-2.1
3,102,878	-		GFF3028	0.53	-0.1
3,102,926	+		GFF3028	0.56	+0.3
3,102,931	+		GFF3028	0.56	+1.2
3,102,931	+		GFF3028	0.56	+0.8
3,102,939	-		GFF3028	0.57	+0.0
3,102,944	-		GFF3028	0.57	-0.8
3,102,948	+		GFF3028	0.57	-1.2
3,102,958	+		GFF3028	0.58	-2.7
3,102,966	-		GFF3028	0.59	-2.7
3,102,983	+		GFF3028	0.60	-0.3
3,102,993	+		GFF3028	0.60	-1.4
3,102,993	+		GFF3028	0.60	-1.9
3,102,993	+		GFF3028	0.60	-1.1
3,102,993	+		GFF3028	0.60	-0.1
3,102,993	+		GFF3028	0.60	+0.1
3,102,993	+		GFF3028	0.60	-1.6
3,102,993	+		GFF3028	0.60	+0.4
3,102,993	+		GFF3028	0.60	-0.6
3,102,998	+		GFF3028	0.61	-1.8
3,102,998	+		GFF3028	0.61	-0.6
3,103,001	-		GFF3028	0.61	-2.7
3,103,001	-		GFF3028	0.61	+0.2
3,103,001	-		GFF3028	0.61	-0.6
3,103,001	-		GFF3028	0.61	+0.1
3,103,011	-		GFF3028	0.62	+0.3
3,103,023	-		GFF3028	0.62	-1.1
3,103,060	-		GFF3028	0.65	-0.9
3,103,111	+		GFF3028	0.68	-0.1
3,103,111	+		GFF3028	0.68	-1.1
3,103,111	+		GFF3028	0.68	+1.3
3,103,111	+		GFF3028	0.68	-0.7
3,103,111	+		GFF3028	0.68	+0.8
3,103,111	+		GFF3028	0.68	-2.1
3,103,111	-		GFF3028	0.68	-0.3
3,103,113	+		GFF3028	0.68	-1.4
3,103,116	-		GFF3028	0.69	-0.7
3,103,119	-		GFF3028	0.69	-0.7
3,103,119	-		GFF3028	0.69	-0.7
3,103,129	-		GFF3028	0.69	-1.0
3,103,137	+		GFF3028	0.70	-1.6
3,103,137	+		GFF3028	0.70	-0.1
3,103,137	+		GFF3028	0.70	-0.7
3,103,137	+		GFF3028	0.70	+0.5
3,103,137	+		GFF3028	0.70	-1.0
3,103,137	+		GFF3028	0.70	-1.6
3,103,137	+		GFF3028	0.70	-0.9
3,103,137	+		GFF3028	0.70	-2.2
3,103,137	+		GFF3028	0.70	+0.0
3,103,137	+		GFF3028	0.70	+0.3
3,103,137	+		GFF3028	0.70	+0.4
3,103,137	+		GFF3028	0.70	-0.2
3,103,145	-		GFF3028	0.71	-0.9
3,103,145	-		GFF3028	0.71	-0.8
3,103,145	-		GFF3028	0.71	+0.4
3,103,145	-		GFF3028	0.71	-0.6
3,103,145	-		GFF3028	0.71	-1.6
3,103,145	-		GFF3028	0.71	+0.3
3,103,145	-		GFF3028	0.71	+1.3
3,103,145	-		GFF3028	0.71	-0.3
3,103,145	-		GFF3028	0.71	-0.2
3,103,145	-		GFF3028	0.71	+1.3
3,103,145	-		GFF3028	0.71	+1.3
3,103,145	-		GFF3028	0.71	+0.2
3,103,145	-		GFF3028	0.71	+0.3
3,103,145	-		GFF3028	0.71	-2.1
3,103,145	-		GFF3028	0.71	+0.6
3,103,145	-		GFF3028	0.71	-0.7
3,103,145	-		GFF3028	0.71	-1.1
3,103,155	-		GFF3028	0.71	+0.6
3,103,159	+		GFF3028	0.71	-1.0
3,103,159	+		GFF3028	0.71	-0.1
3,103,162	-		GFF3028	0.72	-0.1
3,103,163	-		GFF3028	0.72	-0.5
3,103,163	-		GFF3028	0.72	-0.2
3,103,167	-		GFF3028	0.72	-1.9
3,103,178	+		GFF3028	0.73	-0.3
3,103,185	-		GFF3028	0.73	+0.4
3,103,198	+		GFF3028	0.74	-0.7
3,103,211	-		GFF3028	0.75	+0.3
3,103,261	-		GFF3028	0.78	+0.3
3,103,278	+		GFF3028	0.79	+0.8
3,103,278	+		GFF3028	0.79	-0.5
3,103,278	+		GFF3028	0.79	+0.1
3,103,278	+		GFF3028	0.79	-0.4
3,103,285	+		GFF3028	0.80	+0.4
3,103,286	-		GFF3028	0.80	-1.0
3,103,344	+		GFF3028	0.84	+0.8
3,103,344	+		GFF3028	0.84	+0.6
3,103,349	+		GFF3028	0.84	-1.0
3,103,349	+		GFF3028	0.84	-0.6
3,103,352	-		GFF3028	0.84	-1.3
3,103,352	-		GFF3028	0.84	+0.3
3,103,352	-		GFF3028	0.84	+0.3
3,103,352	-		GFF3028	0.84	-0.4
3,103,357	-		GFF3028	0.85	+0.4
3,103,367	-		GFF3028	0.85	-0.7
3,103,369	+		GFF3028	0.85	+0.4
3,103,391	+		GFF3028	0.87	-0.7
3,103,399	+		GFF3028	0.87	+1.3
3,103,399	-		GFF3028	0.87	+0.7
3,103,399	-		GFF3028	0.87	+0.7
3,103,399	-		GFF3028	0.87	-0.7
3,103,399	-		GFF3028	0.87	+0.9
3,103,407	-		GFF3028	0.88	-1.2
3,103,407	-		GFF3028	0.88	-1.2
3,103,407	-		GFF3028	0.88	-0.7
3,103,424	-		GFF3028	0.89	-0.6
3,103,433	+		GFF3028	0.90	+1.0
3,103,434	+		GFF3028	0.90	-1.1
3,103,434	+		GFF3028	0.90	-0.7
3,103,441	-				-1.6
3,103,441	-				-0.6
3,103,442	-				+1.2
3,103,450	+				-1.1
3,103,450	+				-1.6
3,103,450	+				+0.8
3,103,450	+				+0.8
3,103,450	+				-0.6
3,103,450	+				-0.4
3,103,450	+				+0.6
3,103,458	-				-0.5
3,103,458	-				+0.2
3,103,497	-				-0.2
3,103,497	-				+1.2
3,103,497	-				-0.7
3,103,506	+				-1.7
3,103,506	+				-1.4
3,103,506	+				-0.6
3,103,514	-				-1.1
3,103,566	+				-1.2
3,103,579	-				-0.6
3,103,587	+				-1.6
3,103,600	+				+0.0
3,103,600	+				+1.0
3,103,600	+				-2.4
3,103,600	+				-0.7
3,103,600	+				-2.2
3,103,600	+				-1.7
3,103,600	+				-0.6
3,103,602	-				+1.0
3,103,603	-				+0.2
3,103,608	-				-1.0
3,103,608	-				+1.0
3,103,608	-				-0.0
3,103,608	-				-0.4
3,103,608	-				+1.2
3,103,608	-				-0.2
3,103,608	-				+0.3
3,103,608	-				-1.7
3,103,608	-				-1.1
3,103,608	-				-1.0
3,103,608	-				+1.0
3,103,608	-				-1.3
3,103,608	-				+0.2
3,103,610	+				-0.2
3,103,612	+				-0.7
3,103,618	+				+0.3
3,103,630	-				-1.0
3,103,636	+				-0.1
3,103,643	-				+1.4
3,103,649	-				+1.6
3,103,675	-				-1.0
3,103,702	+				-2.1
3,103,705	-				-0.6
3,103,710	-				-0.6
3,103,712	+				+1.2
3,103,713	+				-0.3
3,103,713	+				-1.6
3,103,721	-				-0.7
3,103,721	-				-1.6
3,103,721	-				-0.6
3,103,779	-				-0.1
3,103,853	-		GFF3029	0.13	+0.1
3,103,866	-		GFF3029	0.14	+1.9
3,103,892	-		GFF3029	0.15	-0.3
3,103,898	+		GFF3029	0.15	-0.3
3,103,906	-		GFF3029	0.15	-0.6
3,103,907	-		GFF3029	0.16	-2.6
3,103,908	+		GFF3029	0.16	-2.0
3,103,957	+		GFF3029	0.18	-1.7
3,103,957	+		GFF3029	0.18	-0.5
3,103,957	+		GFF3029	0.18	-0.9
3,103,960	-		GFF3029	0.18	-1.3
3,103,962	+		GFF3029	0.18	+0.3
3,103,962	+		GFF3029	0.18	-0.5
3,103,965	-		GFF3029	0.18	-1.7
3,103,967	+		GFF3029	0.18	-0.3
3,103,967	+		GFF3029	0.18	-0.6
3,103,975	-		GFF3029	0.19	+0.8
3,103,975	-		GFF3029	0.19	+0.6
3,103,980	-		GFF3029	0.19	+1.5
3,103,980	-		GFF3029	0.19	-0.2
3,103,980	-		GFF3029	0.19	+0.2
3,103,984	+		GFF3029	0.19	+1.6
3,103,989	-		GFF3029	0.20	+0.9
3,103,990	+		GFF3029	0.20	-1.1
3,104,000	+		GFF3029	0.20	+0.2
3,104,000	-		GFF3029	0.20	+0.4
3,104,016	-		GFF3029	0.21	-0.6
3,104,016	-		GFF3029	0.21	+0.8
3,104,021	+		GFF3029	0.21	-2.2
3,104,026	+		GFF3029	0.21	-0.2
3,104,027	-		GFF3029	0.21	+0.8
3,104,034	-		GFF3029	0.22	-1.3
3,104,052	+		GFF3029	0.23	-1.9
3,104,052	+		GFF3029	0.23	+0.0
3,104,052	+		GFF3029	0.23	-1.7
3,104,057	+		GFF3029	0.23	+0.4
3,104,060	-		GFF3029	0.23	+0.0
3,104,065	-		GFF3029	0.23	-0.8
3,104,065	-		GFF3029	0.23	-0.3
3,104,065	-		GFF3029	0.23	-0.2
3,104,065	-		GFF3029	0.23	-0.3
3,104,077	+		GFF3029	0.24	-1.2
3,104,081	+		GFF3029	0.24	-1.7
3,104,081	+		GFF3029	0.24	+1.5
3,104,083	+		GFF3029	0.24	+0.8
3,104,085	-		GFF3029	0.24	-0.5
3,104,085	-		GFF3029	0.24	+0.3
3,104,085	-		GFF3029	0.24	-1.6
3,104,103	+		GFF3029	0.25	-2.1
3,104,111	+		GFF3029	0.26	-0.6
3,104,111	+		GFF3029	0.26	-0.9
3,104,111	+		GFF3029	0.26	+1.2
3,104,116	+		GFF3029	0.26	+0.0
3,104,119	-		GFF3029	0.26	-0.2
3,104,129	-		GFF3029	0.26	+0.3
3,104,131	+		GFF3029	0.26	-1.3
3,104,131	+		GFF3029	0.26	-0.9
3,104,139	-		GFF3029	0.27	-0.7
3,104,139	-		GFF3029	0.27	+0.1
3,104,193	+		GFF3029	0.30	+0.3
3,104,196	-		GFF3029	0.30	-1.2
3,104,205	+		GFF3029	0.30	+0.0
3,104,205	+		GFF3029	0.30	-0.6
3,104,212	+		GFF3029	0.30	+0.9
3,104,213	-		GFF3029	0.30	-0.3
3,104,213	-		GFF3029	0.30	+0.3
3,104,213	-		GFF3029	0.30	-0.2
3,104,220	-		GFF3029	0.31	-1.6
3,104,220	-		GFF3029	0.31	+0.7
3,104,259	-		GFF3029	0.33	-0.4
3,104,259	-		GFF3029	0.33	-0.6
3,104,263	+		GFF3029	0.33	-2.0
3,104,271	+		GFF3029	0.33	-2.1
3,104,271	+		GFF3029	0.33	+0.9
3,104,286	+		GFF3029	0.34	+1.6
3,104,286	+		GFF3029	0.34	-1.4
3,104,286	-		GFF3029	0.34	+1.3
3,104,286	-		GFF3029	0.34	-2.0
3,104,304	-		GFF3029	0.35	-0.9
3,104,320	+		GFF3029	0.36	-1.0
3,104,322	+		GFF3029	0.36	-1.6
3,104,322	+		GFF3029	0.36	+0.0
3,104,330	-		GFF3029	0.36	-0.5
3,104,344	+		GFF3029	0.37	+0.1
3,104,344	+		GFF3029	0.37	+0.3
3,104,352	-		GFF3029	0.37	+1.7
3,104,352	-		GFF3029	0.37	-1.1
3,104,393	-		GFF3029	0.39	+0.6
3,104,396	+		GFF3029	0.39	-0.0
3,104,396	+		GFF3029	0.39	+0.3
3,104,410	-		GFF3029	0.40	-0.7
3,104,410	-		GFF3029	0.40	+0.4
3,104,415	-		GFF3029	0.40	-0.1
3,104,417	+		GFF3029	0.40	-0.5
3,104,417	+		GFF3029	0.40	-0.5
3,104,425	-		GFF3029	0.41	+0.3
3,104,453	-		GFF3029	0.42	+0.0
3,104,462	-		GFF3029	0.43	+0.2
3,104,463	-		GFF3029	0.43	+0.3
3,104,469	+		GFF3029	0.43	+0.6
3,104,469	+		GFF3029	0.43	-1.3
3,104,469	+		GFF3029	0.43	+0.2
3,104,477	-		GFF3029	0.43	-1.7
3,104,477	-		GFF3029	0.43	+1.0
3,104,477	-		GFF3029	0.43	+1.0
3,104,518	-		GFF3029	0.45	+0.9
3,104,533	-		GFF3029	0.46	-1.2
3,104,551	+		GFF3029	0.47	-0.6
3,104,556	-		GFF3029	0.47	-1.9
3,104,559	-		GFF3029	0.47	-2.0
3,104,568	+		GFF3029	0.48	+1.0
3,104,568	+		GFF3029	0.48	-0.8
3,104,568	+		GFF3029	0.48	-0.3
3,104,568	+		GFF3029	0.48	-2.6
3,104,573	+		GFF3029	0.48	-2.4
3,104,576	-		GFF3029	0.48	+0.9
3,104,576	-		GFF3029	0.48	+0.6
3,104,576	-		GFF3029	0.48	-0.3
3,104,578	+		GFF3029	0.48	+0.4
3,104,595	+		GFF3029	0.49	+0.0
3,104,607	-		GFF3029	0.50	+0.4
3,104,618	-		GFF3029	0.50	+0.9
3,104,652	+		GFF3029	0.52	-0.8
3,104,669	+		GFF3029	0.53	-1.4
3,104,669	+		GFF3029	0.53	+0.4
3,104,677	+		GFF3029	0.53	+1.1
3,104,677	-		GFF3029	0.53	-0.2
3,104,677	-		GFF3029	0.53	-1.7
3,104,685	+		GFF3029	0.54	-1.7
3,104,695	+		GFF3029	0.54	-2.3
3,104,700	+		GFF3029	0.54	-2.1
3,104,729	+		GFF3029	0.56	-1.6
3,104,744	+		GFF3029	0.56	-1.6
3,104,752	-		GFF3029	0.57	+1.0
3,104,781	+		GFF3029	0.58	+0.3
3,104,786	+		GFF3029	0.59	-1.2
3,104,786	+		GFF3029	0.59	-1.1
3,104,794	-		GFF3029	0.59	-0.2
3,104,794	-		GFF3029	0.59	+0.0
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3,104,997	+		GFF3029	0.69	+0.0
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3,105,225	+		GFF3029	0.80	+0.0
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3,105,466	+				+0.9
3,105,468	-				+0.4
3,105,470	+				+1.3
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3,105,541	+				-1.3
3,105,541	+				-1.4
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3,105,550	-				+0.4
3,105,550	-				+1.0
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3,105,564	+				+0.3
3,105,570	-				+0.3
3,105,572	-				-0.8
3,105,572	-				+0.8
3,105,608	+				-0.9
3,105,612	+				-0.2
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3,105,644	+				+0.6
3,105,655	+				+1.8
3,105,663	-				-0.6
3,105,665	-				-0.2
3,105,677	-				+1.3
3,105,678	-				-0.3
3,105,737	-		GFF3030	0.28	-1.7
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3,105,788	-		GFF3030	0.60	-2.1
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3,105,843	+				+0.4
3,105,857	+				-1.9
3,105,895	+				-0.9
3,105,895	+				+0.6
3,105,895	+				+0.5
3,105,895	+				-0.2
3,105,895	+				+0.3
3,105,897	+				+0.8
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3,105,903	-				-1.0
3,105,903	-				+0.0
3,105,903	-				-1.9
3,105,903	-				-0.2
3,105,922	-				+0.7
3,105,929	-				-0.7
3,105,947	-				-0.3
3,105,947	-				-0.9
3,105,961	-				+0.7
3,105,971	-				+0.3
3,105,972	+				+0.3
3,105,982	-				-0.2
3,105,982	-				-0.1
3,105,982	-				-1.9
3,105,990	-				-0.4
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3,106,004	+				-1.2
3,106,010	-				-1.4
3,106,010	-				-0.3
3,106,016	-				-0.4
3,106,016	-				-2.6
3,106,074	+				-1.6
3,106,082	-				-0.2
3,106,121	+				-0.9
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