Strain Fitness in Sphingobium sp. HT1-2 around GFF2988

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,042,856	-				-0.2
3,042,857	-				-0.7
3,042,858	+				+0.1
3,042,859	+				-2.5
3,042,870	+				-1.5
3,042,878	-				+0.3
3,042,881	+				-0.0
3,042,884	-				-0.8
3,042,884	-				+0.7
3,042,892	+				+0.8
3,042,892	+				-0.4
3,042,892	+				-2.8
3,042,892	+				-0.1
3,042,893	+				+0.6
3,042,893	+				+0.0
3,042,893	+				-0.4
3,042,898	+				-0.7
3,042,900	-				-1.2
3,042,901	-				-0.6
3,042,905	+				+0.3
3,042,924	+				+0.1
3,042,924	+				-0.1
3,042,926	-				-0.2
3,042,942	+				-1.3
3,042,942	+				+0.5
3,042,950	-				+0.4
3,042,963	+				+0.7
3,042,963	+				-1.1
3,042,963	+				+0.0
3,042,968	+				+0.1
3,042,971	-				-0.7
3,042,971	-				-0.3
3,042,981	-				+0.5
3,042,987	+				-1.3
3,042,987	+				-0.3
3,042,987	+				-0.3
3,042,991	-				-0.3
3,042,995	-				-0.7
3,042,995	-				-0.2
3,043,018	-				-0.5
3,043,018	-				-2.6
3,043,030	-				+0.0
3,043,071	-				-1.5
3,043,076	+				-1.5
3,043,080	+				-1.6
3,043,080	+				-0.1
3,043,088	-				-0.6
3,043,088	-				+0.6
3,043,089	-				+0.3
3,043,090	+				-0.2
3,043,090	+				+0.5
3,043,090	+				+1.2
3,043,098	-		GFF2987	0.11	-0.1
3,043,098	-		GFF2987	0.11	+1.2
3,043,103	-		GFF2987	0.11	-0.2
3,043,141	+		GFF2987	0.17	-0.7
3,043,149	-		GFF2987	0.18	+0.1
3,043,153	-		GFF2987	0.19	+0.9
3,043,160	-		GFF2987	0.20	-0.4
3,043,172	+		GFF2987	0.21	+1.1
3,043,172	+		GFF2987	0.21	-0.6
3,043,180	-		GFF2987	0.22	-1.2
3,043,182	+		GFF2987	0.23	+0.1
3,043,189	-		GFF2987	0.24	-0.3
3,043,189	-		GFF2987	0.24	-0.1
3,043,191	+		GFF2987	0.24	-1.2
3,043,195	-		GFF2987	0.25	+1.3
3,043,195	-		GFF2987	0.25	+0.2
3,043,195	-		GFF2987	0.25	-0.2
3,043,195	-		GFF2987	0.25	+0.3
3,043,211	+		GFF2987	0.27	-0.5
3,043,211	+		GFF2987	0.27	-0.6
3,043,211	+		GFF2987	0.27	-0.5
3,043,217	+		GFF2987	0.28	-1.2
3,043,219	-		GFF2987	0.28	-0.7
3,043,240	-		GFF2987	0.31	-0.2
3,043,248	-		GFF2987	0.32	+0.0
3,043,255	-		GFF2987	0.33	-0.9
3,043,260	-		GFF2987	0.34	-1.0
3,043,300	+		GFF2987	0.40	+1.0
3,043,301	+		GFF2987	0.40	+0.4
3,043,303	+		GFF2987	0.40	-0.4
3,043,309	-		GFF2987	0.41	+0.6
3,043,313	-		GFF2987	0.42	-0.5
3,043,313	-		GFF2987	0.42	+0.5
3,043,324	+		GFF2987	0.43	-0.9
3,043,332	-		GFF2987	0.44	-1.5
3,043,338	+		GFF2987	0.45	-0.5
3,043,338	+		GFF2987	0.45	+0.1
3,043,346	+		GFF2987	0.46	-1.0
3,043,346	+		GFF2987	0.46	+0.9
3,043,351	-		GFF2987	0.47	-2.1
3,043,354	+		GFF2987	0.47	+0.2
3,043,354	+		GFF2987	0.47	+1.3
3,043,375	+		GFF2987	0.50	-0.8
3,043,378	-		GFF2987	0.51	+0.6
3,043,378	-		GFF2987	0.51	+0.5
3,043,393	-		GFF2987	0.53	-0.2
3,043,410	+		GFF2987	0.55	-0.6
3,043,451	+		GFF2987	0.61	+0.4
3,043,467	+		GFF2987	0.64	+1.2
3,043,467	+		GFF2987	0.64	+0.7
3,043,472	+		GFF2987	0.64	-0.1
3,043,472	+		GFF2987	0.64	-1.9
3,043,472	+		GFF2987	0.64	-0.3
3,043,474	+		GFF2987	0.65	+0.9
3,043,475	-		GFF2987	0.65	-1.4
3,043,482	+		GFF2987	0.66	+0.3
3,043,482	-		GFF2987	0.66	-0.4
3,043,483	+		GFF2987	0.66	+0.3
3,043,497	+		GFF2987	0.68	+0.4
3,043,517	+		GFF2987	0.71	+0.6
3,043,539	+		GFF2987	0.74	+0.2
3,043,555	-		GFF2987	0.76	+0.1
3,043,555	-		GFF2987	0.76	+0.8
3,043,564	+		GFF2987	0.78	-1.3
3,043,569	+		GFF2987	0.78	+0.1
3,043,644	+		GFF2987	0.89	-0.3
3,043,646	-		GFF2987	0.89	-0.1
3,043,668	-				-1.8
3,043,673	+				-0.5
3,043,683	+				-0.1
3,043,686	-				+0.9
3,043,689	+				-0.3
3,043,689	-				-0.3
3,043,697	+				-1.1
3,043,697	+				+0.7
3,043,705	-				-0.6
3,043,705	-				+0.8
3,043,705	-				+0.2
3,043,705	-				-1.1
3,043,705	-				+0.5
3,043,725	+				+0.4
3,043,736	+				+0.2
3,043,740	-				-0.9
3,043,740	-				+0.4
3,043,744	+				-1.3
3,043,744	+				-0.5
3,043,744	+				-0.2
3,043,745	-				+0.6
3,043,752	-				+0.4
3,043,752	-				+1.3
3,043,755	+				+0.6
3,043,755	+				-0.1
3,043,755	+				-1.3
3,043,755	+				+1.1
3,043,755	+				-1.3
3,043,755	+				-0.6
3,043,755	+				+0.9
3,043,755	+				-0.5
3,043,755	+				-0.4
3,043,755	+				+0.2
3,043,755	+				-0.8
3,043,760	+				-1.2
3,043,760	+				-0.2
3,043,760	+				+0.6
3,043,760	+				+0.6
3,043,763	-				+1.1
3,043,763	-				+1.2
3,043,763	-				+0.4
3,043,763	-				-1.4
3,043,763	-				-0.8
3,043,763	-				-1.2
3,043,763	-				-0.5
3,043,763	-				-1.3
3,043,763	-				-1.1
3,043,763	-				+1.0
3,043,765	+				+0.2
3,043,765	+				-0.5
3,043,765	+				-1.9
3,043,765	+				-1.4
3,043,768	-				-0.1
3,043,768	-				-0.5
3,043,768	-				-2.2
3,043,768	-				-1.4
3,043,773	-				-1.5
3,043,773	-				+0.6
3,043,773	-				-1.5
3,043,773	-				-0.1
3,043,777	+				-0.1
3,043,782	+				+0.2
3,043,798	+				-0.6
3,043,798	+				-0.8
3,043,801	+				-0.7
3,043,903	+				+0.4
3,043,921	-				+0.0
3,043,974	-				-0.6
3,043,989	+				+0.1
3,043,989	+				+0.3
3,044,029	+				-0.3
3,044,029	+				-1.1
3,044,029	+				-1.7
3,044,029	+				+0.5
3,044,029	+				+1.3
3,044,035	-				-1.7
3,044,037	-				+1.8
3,044,042	-				-1.4
3,044,047	-		GFF2988	0.10	+0.6
3,044,047	-		GFF2988	0.10	+0.2
3,044,049	+		GFF2988	0.10	-0.3
3,044,052	-		GFF2988	0.10	+0.8
3,044,054	+		GFF2988	0.10	-2.0
3,044,054	+		GFF2988	0.10	+1.5
3,044,062	-		GFF2988	0.11	-0.9
3,044,062	-		GFF2988	0.11	-1.4
3,044,074	+		GFF2988	0.11	-0.1
3,044,085	+		GFF2988	0.12	-1.2
3,044,091	+		GFF2988	0.12	-0.9
3,044,095	+		GFF2988	0.13	-1.1
3,044,103	-		GFF2988	0.13	-1.5
3,044,113	+		GFF2988	0.14	+0.3
3,044,113	+		GFF2988	0.14	-0.6
3,044,113	+		GFF2988	0.14	+1.0
3,044,113	+		GFF2988	0.14	+0.9
3,044,121	-		GFF2988	0.14	-0.6
3,044,121	-		GFF2988	0.14	-1.1
3,044,121	-		GFF2988	0.14	-0.1
3,044,121	-		GFF2988	0.14	-2.0
3,044,121	-		GFF2988	0.14	-0.6
3,044,121	-		GFF2988	0.14	-1.3
3,044,121	-		GFF2988	0.14	+0.4
3,044,121	-		GFF2988	0.14	-1.4
3,044,136	-		GFF2988	0.15	-1.9
3,044,144	-		GFF2988	0.15	-0.7
3,044,149	+		GFF2988	0.15	-1.1
3,044,149	-		GFF2988	0.15	-0.2
3,044,152	-		GFF2988	0.16	-1.5
3,044,159	-		GFF2988	0.16	-0.2
3,044,159	-		GFF2988	0.16	+0.7
3,044,167	-		GFF2988	0.16	-1.3
3,044,182	+		GFF2988	0.17	-0.5
3,044,182	+		GFF2988	0.17	+1.0
3,044,184	+		GFF2988	0.17	+1.4
3,044,192	-		GFF2988	0.18	-1.0
3,044,192	-		GFF2988	0.18	+0.3
3,044,197	+		GFF2988	0.18	-2.1
3,044,205	-		GFF2988	0.18	-0.9
3,044,207	-		GFF2988	0.18	-0.4
3,044,227	-		GFF2988	0.20	-0.2
3,044,234	-		GFF2988	0.20	-0.7
3,044,234	-		GFF2988	0.20	+0.4
3,044,237	-		GFF2988	0.20	+0.2
3,044,241	+		GFF2988	0.20	-0.1
3,044,244	-		GFF2988	0.20	-2.0
3,044,244	-		GFF2988	0.20	+1.2
3,044,246	+		GFF2988	0.21	+0.3
3,044,246	+		GFF2988	0.21	+0.9
3,044,249	+		GFF2988	0.21	-0.2
3,044,271	-		GFF2988	0.22	-0.2
3,044,285	-		GFF2988	0.23	-1.5
3,044,293	-		GFF2988	0.23	-0.1
3,044,310	+		GFF2988	0.24	-0.2
3,044,316	+		GFF2988	0.24	-0.8
3,044,318	-		GFF2988	0.24	-0.7
3,044,318	-		GFF2988	0.24	+0.0
3,044,318	-		GFF2988	0.24	-1.2
3,044,318	-		GFF2988	0.24	-0.3
3,044,329	-		GFF2988	0.25	-0.5
3,044,344	+		GFF2988	0.26	-0.1
3,044,344	+		GFF2988	0.26	-0.6
3,044,344	+		GFF2988	0.26	-0.8
3,044,344	+		GFF2988	0.26	-0.1
3,044,352	-		GFF2988	0.26	-0.4
3,044,352	-		GFF2988	0.26	+1.0
3,044,352	-		GFF2988	0.26	-0.3
3,044,353	+		GFF2988	0.26	+0.1
3,044,353	+		GFF2988	0.26	-1.3
3,044,353	-		GFF2988	0.26	-0.9
3,044,353	-		GFF2988	0.26	-0.2
3,044,361	-		GFF2988	0.27	+0.1
3,044,379	-		GFF2988	0.28	-1.1
3,044,399	+		GFF2988	0.29	+0.2
3,044,408	+		GFF2988	0.29	+1.4
3,044,408	+		GFF2988	0.29	-1.4
3,044,408	+		GFF2988	0.29	+2.2
3,044,416	-		GFF2988	0.29	+0.7
3,044,416	-		GFF2988	0.29	+0.0
3,044,416	-		GFF2988	0.29	+0.6
3,044,417	+		GFF2988	0.30	-2.4
3,044,418	+		GFF2988	0.30	+0.7
3,044,418	+		GFF2988	0.30	+1.1
3,044,418	+		GFF2988	0.30	+0.7
3,044,418	+		GFF2988	0.30	-1.6
3,044,418	+		GFF2988	0.30	+0.2
3,044,418	+		GFF2988	0.30	-2.3
3,044,426	-		GFF2988	0.30	+0.3
3,044,426	-		GFF2988	0.30	-1.7
3,044,426	-		GFF2988	0.30	+1.2
3,044,426	-		GFF2988	0.30	-1.4
3,044,426	-		GFF2988	0.30	-2.1
3,044,430	+		GFF2988	0.30	+2.0
3,044,438	-		GFF2988	0.31	+0.4
3,044,438	-		GFF2988	0.31	+0.7
3,044,468	-		GFF2988	0.32	-0.4
3,044,513	-		GFF2988	0.35	+0.2
3,044,513	-		GFF2988	0.35	-0.4
3,044,513	-		GFF2988	0.35	+1.1
3,044,523	-		GFF2988	0.35	+0.7
3,044,527	-		GFF2988	0.35	+1.4
3,044,544	+		GFF2988	0.36	-0.5
3,044,544	+		GFF2988	0.36	-1.6
3,044,544	+		GFF2988	0.36	-1.1
3,044,549	+		GFF2988	0.36	-0.4
3,044,552	-		GFF2988	0.37	-1.2
3,044,556	+		GFF2988	0.37	+0.5
3,044,564	+		GFF2988	0.37	+1.0
3,044,564	+		GFF2988	0.37	-1.9
3,044,573	+		GFF2988	0.38	-0.7
3,044,589	+		GFF2988	0.39	+0.3
3,044,589	+		GFF2988	0.39	-0.4
3,044,591	+		GFF2988	0.39	-0.8
3,044,596	+		GFF2988	0.39	-0.8
3,044,611	+		GFF2988	0.40	-1.4
3,044,614	-		GFF2988	0.40	+0.7
3,044,626	-		GFF2988	0.41	+1.0
3,044,645	-		GFF2988	0.42	+0.6
3,044,654	+		GFF2988	0.42	-0.7
3,044,654	+		GFF2988	0.42	-1.2
3,044,654	+		GFF2988	0.42	-2.4
3,044,659	+		GFF2988	0.42	-1.6
3,044,662	-		GFF2988	0.42	-2.4
3,044,689	+		GFF2988	0.44	-0.8
3,044,699	-		GFF2988	0.44	-0.5
3,044,711	+		GFF2988	0.45	+0.6
3,044,730	+		GFF2988	0.46	-1.3
3,044,735	+		GFF2988	0.46	-0.1
3,044,735	+		GFF2988	0.46	-1.1
3,044,735	+		GFF2988	0.46	-0.6
3,044,743	-		GFF2988	0.47	+1.2
3,044,773	-		GFF2988	0.48	+0.6
3,044,798	-		GFF2988	0.50	-0.3
3,044,857	-		GFF2988	0.53	+0.1
3,044,863	+		GFF2988	0.53	+0.5
3,044,871	-		GFF2988	0.53	+1.0
3,044,871	-		GFF2988	0.53	+1.0
3,044,873	+		GFF2988	0.54	-2.1
3,044,873	+		GFF2988	0.54	+1.0
3,044,876	-		GFF2988	0.54	-1.1
3,044,881	-		GFF2988	0.54	-0.1
3,044,938	+		GFF2988	0.57	+0.6
3,044,938	+		GFF2988	0.57	-0.6
3,044,938	+		GFF2988	0.57	-0.5
3,044,938	+		GFF2988	0.57	+0.2
3,044,942	-		GFF2988	0.57	-0.0
3,044,946	-		GFF2988	0.57	-0.1
3,044,951	-		GFF2988	0.58	-0.5
3,044,961	-		GFF2988	0.58	+1.3
3,044,963	+		GFF2988	0.58	-0.4
3,044,966	-		GFF2988	0.58	+1.3
3,044,967	-		GFF2988	0.59	+0.3
3,044,971	-		GFF2988	0.59	+1.4
3,044,971	-		GFF2988	0.59	+0.7
3,044,971	-		GFF2988	0.59	+1.0
3,044,973	+		GFF2988	0.59	+0.5
3,044,981	-		GFF2988	0.59	+0.6
3,044,981	-		GFF2988	0.59	-1.2
3,044,981	-		GFF2988	0.59	+0.5
3,045,006	-		GFF2988	0.61	+0.2
3,045,019	+		GFF2988	0.61	-1.8
3,045,034	+		GFF2988	0.62	-0.4
3,045,037	-		GFF2988	0.62	-0.3
3,045,042	-		GFF2988	0.62	-0.6
3,045,042	-		GFF2988	0.62	+0.4
3,045,050	-		GFF2988	0.63	+0.1
3,045,058	+		GFF2988	0.63	+1.2
3,045,058	+		GFF2988	0.63	-1.8
3,045,058	+		GFF2988	0.63	-0.7
3,045,058	+		GFF2988	0.63	-0.7
3,045,058	+		GFF2988	0.63	-2.3
3,045,059	-		GFF2988	0.63	+1.5
3,045,060	+		GFF2988	0.63	-0.7
3,045,066	-		GFF2988	0.64	-1.0
3,045,066	-		GFF2988	0.64	-0.2
3,045,079	+		GFF2988	0.64	-1.8
3,045,080	+		GFF2988	0.64	-0.3
3,045,081	-		GFF2988	0.65	-0.0
3,045,085	+		GFF2988	0.65	-0.8
3,045,085	+		GFF2988	0.65	-1.1
3,045,085	+		GFF2988	0.65	-0.3
3,045,087	-		GFF2988	0.65	-0.3
3,045,089	+		GFF2988	0.65	+0.3
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3,045,612	-				+0.4
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3,045,632	-				+0.7
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3,045,719	+				+1.3
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3,045,746	-				-2.1
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3,045,764	+				+0.9
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3,045,821	-				+0.9
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3,045,821	-				-0.9
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