Strain Fitness in Sphingobium sp. HT1-2 around GFF2953

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,017,615	+				-0.5
3,017,615	+				-0.4
3,017,615	+				+0.7
3,017,615	+				-0.1
3,017,616	+				-0.0
3,017,621	+				-0.4
3,017,621	+				+1.2
3,017,621	+				+0.4
3,017,622	+				+0.4
3,017,623	+				+1.0
3,017,623	+				+0.5
3,017,624	-				+1.7
3,017,624	-				-1.3
3,017,630	-				-2.4
3,017,630	-				-0.5
3,017,630	-				-0.9
3,017,630	-				+0.4
3,017,651	+				-0.2
3,017,656	+				-2.0
3,017,663	+		GFF2951	0.11	-0.6
3,017,669	-		GFF2951	0.13	-1.3
3,017,669	-		GFF2951	0.13	+0.6
3,017,677	+		GFF2951	0.15	-1.2
3,017,692	+		GFF2951	0.19	+1.0
3,017,692	+		GFF2951	0.19	-0.7
3,017,693	+		GFF2951	0.20	-1.8
3,017,693	+		GFF2951	0.20	+0.6
3,017,693	+		GFF2951	0.20	-1.2
3,017,693	+		GFF2951	0.20	+0.0
3,017,693	+		GFF2951	0.20	+1.1
3,017,693	+		GFF2951	0.20	-0.9
3,017,693	+		GFF2951	0.20	+0.4
3,017,693	+		GFF2951	0.20	-1.5
3,017,701	-		GFF2951	0.22	-1.5
3,017,701	-		GFF2951	0.22	-0.2
3,017,701	-		GFF2951	0.22	-0.5
3,017,701	-		GFF2951	0.22	+0.8
3,017,701	-		GFF2951	0.22	-0.6
3,017,701	-		GFF2951	0.22	-0.9
3,017,701	-		GFF2951	0.22	-0.7
3,017,712	+		GFF2951	0.25	-0.5
3,017,712	+		GFF2951	0.25	+0.9
3,017,712	+		GFF2951	0.25	+1.1
3,017,720	-		GFF2951	0.27	-1.4
3,017,720	-		GFF2951	0.27	-0.4
3,017,735	-		GFF2951	0.32	+0.7
3,017,762	+		GFF2951	0.39	-1.6
3,017,762	+		GFF2951	0.39	+0.6
3,017,770	-		GFF2951	0.42	-0.3
3,017,770	-		GFF2951	0.42	+1.2
3,017,770	-		GFF2951	0.42	-1.3
3,017,779	+		GFF2951	0.44	-0.6
3,017,797	-		GFF2951	0.49	-1.5
3,017,836	+		GFF2951	0.60	-0.9
3,017,836	+		GFF2951	0.60	+0.5
3,017,844	-		GFF2951	0.63	+0.4
3,017,844	-		GFF2951	0.63	-0.3
3,017,844	-		GFF2951	0.63	-1.2
3,017,871	+		GFF2951	0.70	+1.5
3,017,879	-		GFF2951	0.73	-0.4
3,017,879	-		GFF2951	0.73	+1.7
3,017,912	-		GFF2951	0.82	-0.7
3,017,914	+		GFF2951	0.83	+0.6
3,017,921	+		GFF2951	0.85	+0.6
3,017,923	+		GFF2951	0.85	+0.5
3,017,923	+		GFF2951	0.85	-1.7
3,017,937	+		GFF2951	0.89	+0.0
3,018,444	+				-0.2
3,018,447	-				-0.1
3,018,447	-				-1.1
3,018,465	+				+0.8
3,018,485	-				+0.4
3,018,485	-				-1.6
3,018,504	+				-0.3
3,018,591	+				+1.0
3,018,622	+				-1.4
3,018,658	-		GFF2953	0.10	+0.8
3,018,660	+		GFF2953	0.11	-1.2
3,018,670	+		GFF2953	0.13	+0.5
3,018,678	-		GFF2953	0.15	-0.3
3,018,678	-		GFF2953	0.15	-0.4
3,018,683	+		GFF2953	0.16	-1.8
3,018,683	+		GFF2953	0.16	-0.1
3,018,691	-		GFF2953	0.17	+0.9
3,018,691	-		GFF2953	0.17	+0.1
3,018,693	+		GFF2953	0.18	-1.6
3,018,701	-		GFF2953	0.20	+0.5
3,018,722	-		GFF2953	0.24	-0.6
3,018,729	+		GFF2953	0.26	+1.3
3,018,729	+		GFF2953	0.26	-0.1
3,018,729	+		GFF2953	0.26	+1.0
3,018,736	-		GFF2953	0.27	-0.7
3,018,737	-		GFF2953	0.27	-1.9
3,018,737	-		GFF2953	0.27	+0.1
3,018,755	+		GFF2953	0.31	+0.3
3,018,763	-		GFF2953	0.33	+0.2
3,018,784	-		GFF2953	0.38	-1.2
3,018,788	+		GFF2953	0.39	-0.8
3,018,789	-		GFF2953	0.39	-0.7
3,018,800	+		GFF2953	0.41	-1.1
3,018,817	+		GFF2953	0.45	-1.2
3,018,817	+		GFF2953	0.45	+0.1
3,018,817	+		GFF2953	0.45	+0.4
3,018,817	+		GFF2953	0.45	-2.1
3,018,825	-		GFF2953	0.47	+0.9
3,018,825	-		GFF2953	0.47	-0.3
3,018,825	-		GFF2953	0.47	-0.1
3,018,826	-		GFF2953	0.47	-0.1
3,018,828	+		GFF2953	0.47	-0.5
3,018,828	+		GFF2953	0.47	-0.8
3,018,828	+		GFF2953	0.47	-0.1
3,018,828	+		GFF2953	0.47	-0.4
3,018,828	+		GFF2953	0.47	+1.7
3,018,828	+		GFF2953	0.47	+0.7
3,018,836	-		GFF2953	0.49	-0.7
3,018,836	-		GFF2953	0.49	-0.3
3,018,836	-		GFF2953	0.49	+0.3
3,018,850	+		GFF2953	0.52	-1.0
3,018,852	+		GFF2953	0.53	+1.2
3,018,852	+		GFF2953	0.53	-0.8
3,018,860	-		GFF2953	0.54	+1.9
3,018,860	-		GFF2953	0.54	-2.0
3,018,871	+		GFF2953	0.57	+0.0
3,018,876	+		GFF2953	0.58	-0.0
3,018,897	+		GFF2953	0.62	-0.1
3,018,897	+		GFF2953	0.62	-0.5
3,018,914	+		GFF2953	0.66	-2.3
3,018,914	+		GFF2953	0.66	-1.5
3,018,922	-		GFF2953	0.68	+0.3
3,018,922	-		GFF2953	0.68	+0.1
3,018,924	+		GFF2953	0.68	-0.3
3,018,935	+		GFF2953	0.71	+0.4
3,018,935	+		GFF2953	0.71	-0.3
3,018,939	-		GFF2953	0.71	+0.5
3,018,973	+		GFF2953	0.79	-0.9
3,018,978	+		GFF2953	0.80	-1.6
3,018,981	-		GFF2953	0.81	+0.2
3,018,981	-		GFF2953	0.81	+0.3
3,018,981	-		GFF2953	0.81	-2.1
3,019,036	-				-1.1
3,019,049	-				+0.8
3,019,085	+				+0.1
3,019,107	+				-1.7
3,019,115	-				+0.1
3,019,117	-				+0.6
3,019,145	-				-0.3
3,019,154	+				+0.6
3,019,154	+				-0.2
3,019,154	+				+0.3
3,019,162	-				-0.1
3,019,162	-				+0.6
3,019,162	-				+0.5
3,019,162	-				-0.1
3,019,173	-				+2.1
3,019,177	+				-2.3
3,019,177	+				-1.5
3,019,182	+		GFF2954	0.13	-0.2
3,019,182	+		GFF2954	0.13	-1.5
3,019,182	+		GFF2954	0.13	+1.8
3,019,182	+		GFF2954	0.13	+0.3
3,019,182	+		GFF2954	0.13	-1.4
3,019,182	+		GFF2954	0.13	+0.3
3,019,182	+		GFF2954	0.13	-0.1
3,019,182	+		GFF2954	0.13	-1.4
3,019,185	-		GFF2954	0.16	+0.3
3,019,185	-		GFF2954	0.16	+0.3
3,019,190	-		GFF2954	0.20	+0.3
3,019,190	-		GFF2954	0.20	+0.7
3,019,190	-		GFF2954	0.20	+0.4
3,019,190	-		GFF2954	0.20	+0.0
3,019,190	-		GFF2954	0.20	-0.7
3,019,204	+		GFF2954	0.32	-0.6
3,019,204	+		GFF2954	0.32	-0.7
3,019,212	-		GFF2954	0.38	-1.7
3,019,212	-		GFF2954	0.38	-0.6
3,019,212	-		GFF2954	0.38	+0.1
3,019,212	-		GFF2954	0.38	-0.3
3,019,212	-		GFF2954	0.38	-0.2
3,019,212	-		GFF2954	0.38	-1.6
3,019,215	-		GFF2954	0.41	-1.6
3,019,229	+		GFF2954	0.53	-0.3
3,019,229	+		GFF2954	0.53	-0.9
3,019,232	-		GFF2954	0.55	-0.5
3,019,234	+		GFF2954	0.57	+1.4
3,019,234	+		GFF2954	0.57	-1.2
3,019,234	+		GFF2954	0.57	+0.0
3,019,242	+		GFF2954	0.63	-0.3
3,019,242	-		GFF2954	0.63	-2.4
3,019,247	-		GFF2954	0.68	-1.2
3,019,257	+		GFF2954	0.76	-3.3
3,019,257	+		GFF2954	0.76	-0.1
3,019,257	+		GFF2954	0.76	-0.9
3,019,257	+		GFF2954	0.76	-1.5
3,019,265	-		GFF2954	0.82	+1.0
3,019,265	-		GFF2954	0.82	+0.4
3,019,265	-		GFF2954	0.82	-0.3
3,019,265	-		GFF2954	0.82	-0.7
3,019,265	-		GFF2954	0.82	+0.2
3,019,270	-		GFF2954	0.87	-0.8
3,019,270	-		GFF2954	0.87	+0.4
3,019,270	-		GFF2954	0.87	-2.0
3,019,272	+		GFF2954	0.88	-0.5
3,019,272	+		GFF2954	0.88	+0.9
3,019,275	-				+0.6
3,019,275	-				-1.8
3,019,275	-				-0.7
3,019,275	-				+0.8
3,019,280	-				-2.2
3,019,280	-				-0.8
3,019,295	+				-0.6
3,019,295	+				-2.0
3,019,303	-				+0.0
3,019,310	+		GFF2955	0.11	-1.9
3,019,310	+		GFF2955	0.11	-0.9
3,019,310	+		GFF2955	0.11	-0.8
3,019,314	+		GFF2955	0.13	+0.1
3,019,314	+		GFF2955	0.13	-1.7
3,019,314	+		GFF2955	0.13	-1.3
3,019,314	+		GFF2955	0.13	-0.3
3,019,314	+		GFF2955	0.13	+0.1
3,019,314	+		GFF2955	0.13	+0.1
3,019,314	+		GFF2955	0.13	-0.1
3,019,318	-		GFF2955	0.14	-0.5
3,019,318	-		GFF2955	0.14	-2.0
3,019,318	-		GFF2955	0.14	+0.2
3,019,329	+		GFF2955	0.18	+1.0
3,019,348	+		GFF2955	0.26	+0.3
3,019,355	-		GFF2955	0.29	-1.2
3,019,355	-		GFF2955	0.29	+1.4
3,019,366	+		GFF2955	0.33	+0.6
3,019,375	+		GFF2955	0.36	-0.2
3,019,375	+		GFF2955	0.36	-0.5
3,019,375	+		GFF2955	0.36	-1.8
3,019,380	+		GFF2955	0.38	-1.5
3,019,388	-		GFF2955	0.42	-0.8
3,019,388	-		GFF2955	0.42	-2.1
3,019,426	+		GFF2955	0.56	-0.1
3,019,434	-		GFF2955	0.60	-0.7
3,019,436	+		GFF2955	0.60	-2.3
3,019,438	+		GFF2955	0.61	-1.2
3,019,458	-		GFF2955	0.69	-0.8
3,019,458	-		GFF2955	0.69	-1.1
3,019,482	-		GFF2955	0.78	-0.4
3,019,487	-		GFF2955	0.80	-0.4
3,019,516	-				+1.1
3,019,519	-				-0.8
3,019,521	-				-0.7
3,019,527	+				-2.8
3,019,527	+				+0.2
3,019,527	+				-1.7
3,019,527	+				+1.6
3,019,535	-				-0.7
3,019,535	-				+1.3
3,019,535	-				-0.2
3,019,551	+		GFF2956	0.11	-1.0
3,019,561	+		GFF2956	0.17	+0.7
3,019,577	-		GFF2956	0.27	+0.7
3,019,611	-		GFF2956	0.47	-1.5
3,019,628	-		GFF2956	0.58	+0.6
3,019,628	-		GFF2956	0.58	+0.1
3,019,639	+		GFF2956	0.64	-0.1
3,019,639	+		GFF2956	0.64	-2.6
3,019,644	+		GFF2956	0.67	-1.5
3,019,644	+		GFF2956	0.67	-2.1
3,019,644	+		GFF2956	0.67	+0.3
3,019,647	-		GFF2956	0.69	-0.3
3,019,647	-		GFF2956	0.69	-0.6
3,019,647	-		GFF2956	0.69	-1.5
3,019,647	-		GFF2956	0.69	-0.3
3,019,647	-		GFF2956	0.69	-0.2
3,019,652	-		GFF2956	0.72	-0.8
3,019,652	-		GFF2956	0.72	-1.6
3,019,661	+		GFF2956	0.78	-0.1
3,019,672	+		GFF2956	0.84	+0.8
3,019,672	+		GFF2956	0.84	-0.6
3,019,680	-		GFF2956	0.89	-0.3
3,019,681	+				+0.9
3,019,685	-				-1.1
3,019,691	+				-0.3
3,019,692	+				-0.5
3,019,714	+				-0.4
3,019,714	+				+0.6
3,019,714	+				-2.5
3,019,714	+				-0.2
3,019,722	+				-1.1
3,019,722	-				+0.3
3,019,722	-				-1.9
3,019,722	-				+0.2
3,019,722	-				-0.3
3,019,732	-				-0.8
3,019,740	-		GFF2957	0.10	-0.6
3,019,765	+		GFF2957	0.16	-0.7
3,019,765	+		GFF2957	0.16	-0.5
3,019,765	+		GFF2957	0.16	+0.9
3,019,765	+		GFF2957	0.16	-1.0
3,019,773	-		GFF2957	0.17	+1.3
3,019,773	-		GFF2957	0.17	-0.2
3,019,773	-		GFF2957	0.17	+0.2
3,019,773	-		GFF2957	0.17	-0.0
3,019,773	-		GFF2957	0.17	-0.7
3,019,773	-		GFF2957	0.17	+0.0
3,019,784	+		GFF2957	0.20	-0.4
3,019,792	-		GFF2957	0.21	-0.1
3,019,792	-		GFF2957	0.21	-1.8
3,019,792	-		GFF2957	0.21	-1.2
3,019,797	-		GFF2957	0.22	-0.5
3,019,797	-		GFF2957	0.22	-2.1
3,019,797	-		GFF2957	0.22	-1.1
3,019,802	-		GFF2957	0.23	-1.5
3,019,822	-		GFF2957	0.28	-0.5
3,019,831	+		GFF2957	0.29	-0.4
3,019,832	-		GFF2957	0.30	-1.8
3,019,839	-		GFF2957	0.31	+1.0
3,019,850	+		GFF2957	0.33	-0.6
3,019,855	+		GFF2957	0.34	-0.7
3,019,862	+		GFF2957	0.36	-0.4
3,019,863	-		GFF2957	0.36	-1.4
3,019,865	-		GFF2957	0.36	-0.6
3,019,866	+		GFF2957	0.37	-0.5
3,019,879	-		GFF2957	0.39	+0.8
3,019,919	+		GFF2957	0.48	-1.4
3,019,919	+		GFF2957	0.48	+1.0
3,019,927	-		GFF2957	0.49	+0.6
3,019,927	-		GFF2957	0.49	-0.4
3,019,927	-		GFF2957	0.49	-1.3
3,019,982	-		GFF2957	0.61	-0.8
3,019,987	-		GFF2957	0.62	-0.6
3,019,989	+		GFF2957	0.62	-0.7
3,019,992	-		GFF2957	0.63	-1.1
3,019,997	-		GFF2957	0.64	+1.8
3,019,997	-		GFF2957	0.64	-1.2
3,019,997	-		GFF2957	0.64	-1.3
3,020,014	-		GFF2957	0.68	+0.3
3,020,014	-		GFF2957	0.68	+0.1
3,020,016	-		GFF2957	0.68	-1.3
3,020,018	+		GFF2957	0.68	-1.0
3,020,031	+		GFF2957	0.71	+1.6
3,020,031	+		GFF2957	0.71	-0.9
3,020,031	+		GFF2957	0.71	-1.9
3,020,031	+		GFF2957	0.71	-0.3
3,020,031	+		GFF2957	0.71	-1.0
3,020,031	+		GFF2957	0.71	+0.4
3,020,031	+		GFF2957	0.71	-1.8
3,020,031	+		GFF2957	0.71	-0.5
3,020,031	+		GFF2957	0.71	+0.0
3,020,031	+		GFF2957	0.71	-1.3
3,020,032	+		GFF2957	0.71	-1.6
3,020,032	+		GFF2957	0.71	-0.1
3,020,038	+		GFF2957	0.72	+0.0
3,020,039	-		GFF2957	0.73	+0.3
3,020,039	-		GFF2957	0.73	-0.4
3,020,039	-		GFF2957	0.73	-0.4
3,020,039	-		GFF2957	0.73	+0.9
3,020,039	-		GFF2957	0.73	-2.2
3,020,039	-		GFF2957	0.73	-1.5
3,020,039	-		GFF2957	0.73	-0.7
3,020,039	-		GFF2957	0.73	+1.3
3,020,039	-		GFF2957	0.73	-2.3
3,020,039	-		GFF2957	0.73	+0.2
3,020,039	-		GFF2957	0.73	-0.9
3,020,039	-		GFF2957	0.73	-0.1
3,020,039	-		GFF2957	0.73	-0.3
3,020,039	-		GFF2957	0.73	-0.6
3,020,039	-		GFF2957	0.73	-0.4
3,020,039	-		GFF2957	0.73	-0.4
3,020,039	-		GFF2957	0.73	+0.0
3,020,039	-		GFF2957	0.73	+0.2
3,020,039	-		GFF2957	0.73	+0.2
3,020,039	-		GFF2957	0.73	-1.0
3,020,039	-		GFF2957	0.73	-1.3
3,020,044	+		GFF2957	0.74	-1.3
3,020,051	-		GFF2957	0.75	-2.3
3,020,052	-		GFF2957	0.75	+0.2
3,020,064	+		GFF2957	0.78	-2.3
3,020,067	-		GFF2957	0.79	+0.1