Strain Fitness in Sphingobium sp. HT1-2 around GFF2898

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,957,690	-		GFF2896	0.76	-1.2
2,957,724	+		GFF2896	0.84	+0.0
2,957,732	-		GFF2896	0.86	-0.1
2,957,732	-		GFF2896	0.86	-0.3
2,957,732	-		GFF2896	0.86	+0.6
2,957,732	-		GFF2896	0.86	-1.1
2,957,734	+		GFF2896	0.86	+0.4
2,957,749	-		GFF2896	0.89	-0.3
2,957,766	+				-3.1
2,957,766	+				-1.4
2,957,766	+				+0.7
2,957,766	+				-0.6
2,957,774	-				-1.6
2,957,774	-				+0.3
2,957,774	-				-1.4
2,957,774	-				+0.4
2,957,774	-				-0.0
2,957,791	+				+1.0
2,957,791	-				-0.0
2,957,802	+				+1.1
2,957,807	+				-1.1
2,957,807	+				+0.5
2,957,807	+				-0.0
2,957,807	+				-1.0
2,957,810	-				-0.9
2,957,810	-				-0.2
2,957,818	+				-1.5
2,957,826	-				+0.5
2,957,826	-				-2.0
2,957,826	-				-1.1
2,957,828	+				-1.2
2,957,836	-				-2.1
2,957,836	-				-1.7
2,957,836	-				-0.5
2,957,836	-				+0.0
2,957,841	+				-0.2
2,957,848	+				+1.1
2,957,864	+				-0.4
2,957,875	+				-0.8
2,957,875	+				+0.6
2,957,877	+				-1.8
2,957,883	-				+0.4
2,957,883	-				-1.2
2,957,895	+				-1.7
2,957,947	-				+0.3
2,957,949	-				+1.1
2,957,961	+				-1.1
2,957,962	-				-1.3
2,957,964	-				-0.6
2,957,964	-				-1.4
2,957,994	-				+0.0
2,958,000	-				-0.8
2,958,010	-				-2.6
2,958,010	-				+0.3
2,958,012	+				+0.0
2,958,049	-		GFF2897	0.14	-0.4
2,958,053	+		GFF2897	0.14	+0.0
2,958,053	+		GFF2897	0.14	-1.2
2,958,061	-		GFF2897	0.15	+0.6
2,958,061	-		GFF2897	0.15	-0.6
2,958,061	-		GFF2897	0.15	+1.6
2,958,090	-		GFF2897	0.20	-2.4
2,958,090	-		GFF2897	0.20	-0.2
2,958,093	+		GFF2897	0.20	+0.3
2,958,101	-		GFF2897	0.21	-1.4
2,958,101	-		GFF2897	0.21	-0.5
2,958,140	-		GFF2897	0.27	+0.3
2,958,151	-		GFF2897	0.29	-0.8
2,958,157	-		GFF2897	0.29	+1.0
2,958,160	+		GFF2897	0.30	-0.0
2,958,190	-		GFF2897	0.34	-2.5
2,958,208	+		GFF2897	0.37	-2.5
2,958,219	-		GFF2897	0.39	+0.3
2,958,235	-		GFF2897	0.41	-0.0
2,958,235	-		GFF2897	0.41	-1.8
2,958,294	+		GFF2897	0.50	-0.1
2,958,294	+		GFF2897	0.50	-0.4
2,958,294	+		GFF2897	0.50	-0.9
2,958,294	+		GFF2897	0.50	+0.0
2,958,294	+		GFF2897	0.50	-0.3
2,958,294	+		GFF2897	0.50	-0.1
2,958,302	-		GFF2897	0.51	+1.0
2,958,302	-		GFF2897	0.51	+0.9
2,958,302	-		GFF2897	0.51	-0.5
2,958,302	-		GFF2897	0.51	+0.2
2,958,302	-		GFF2897	0.51	+1.1
2,958,302	-		GFF2897	0.51	-2.1
2,958,302	-		GFF2897	0.51	+1.7
2,958,335	-		GFF2897	0.56	-0.2
2,958,347	+		GFF2897	0.58	+0.2
2,958,352	+		GFF2897	0.58	-0.2
2,958,352	+		GFF2897	0.58	+0.2
2,958,352	+		GFF2897	0.58	-1.9
2,958,352	+		GFF2897	0.58	+0.9
2,958,355	-		GFF2897	0.59	-0.7
2,958,355	-		GFF2897	0.59	-1.1
2,958,360	-		GFF2897	0.59	-1.0
2,958,360	-		GFF2897	0.59	+0.8
2,958,360	-		GFF2897	0.59	+1.1
2,958,360	-		GFF2897	0.59	-0.8
2,958,360	-		GFF2897	0.59	+1.0
2,958,360	-		GFF2897	0.59	-1.9
2,958,360	-		GFF2897	0.59	-0.4
2,958,360	-		GFF2897	0.59	-0.8
2,958,389	+		GFF2897	0.64	-1.0
2,958,404	+		GFF2897	0.66	-0.9
2,958,412	-		GFF2897	0.67	+0.7
2,958,412	-		GFF2897	0.67	-0.2
2,958,415	+		GFF2897	0.68	+2.0
2,958,441	+		GFF2897	0.71	-1.3
2,958,449	+		GFF2897	0.73	+1.0
2,958,449	+		GFF2897	0.73	-0.3
2,958,449	-		GFF2897	0.73	+0.7
2,958,456	+		GFF2897	0.74	-0.7
2,958,456	+		GFF2897	0.74	-0.6
2,958,457	-		GFF2897	0.74	-0.3
2,958,457	-		GFF2897	0.74	-0.2
2,958,457	-		GFF2897	0.74	+0.4
2,958,457	-		GFF2897	0.74	+0.0
2,958,457	-		GFF2897	0.74	+0.6
2,958,457	-		GFF2897	0.74	+1.0
2,958,462	-		GFF2897	0.74	-1.1
2,958,464	-		GFF2897	0.75	-1.8
2,958,474	-		GFF2897	0.76	-0.4
2,958,474	-		GFF2897	0.76	-0.4
2,958,474	-		GFF2897	0.76	+0.7
2,958,474	-		GFF2897	0.76	-3.5
2,958,474	-		GFF2897	0.76	+0.3
2,958,485	+		GFF2897	0.78	+0.4
2,958,490	+		GFF2897	0.79	-0.5
2,958,498	-		GFF2897	0.80	-0.0
2,958,506	+		GFF2897	0.81	-0.8
2,958,511	+		GFF2897	0.82	+0.2
2,958,519	-		GFF2897	0.83	-2.5
2,958,521	+		GFF2897	0.83	+0.8
2,958,537	+		GFF2897	0.86	-1.5
2,958,538	+		GFF2897	0.86	+0.3
2,958,538	+		GFF2897	0.86	-2.6
2,958,538	+		GFF2897	0.86	+0.3
2,958,543	+		GFF2897	0.86	+0.7
2,958,545	-		GFF2897	0.87	-1.9
2,958,546	-		GFF2897	0.87	-1.0
2,958,565	+		GFF2897	0.90	+1.4
2,958,568	-				-0.0
2,958,576	-				-0.3
2,958,584	+				-1.7
2,958,587	-				+0.2
2,958,587	-				-0.1
2,958,587	-				-0.9
2,958,587	-				-1.3
2,958,587	-				+0.8
2,958,587	-				+0.5
2,958,603	-				-0.3
2,958,603	-				+1.2
2,958,609	-				-1.4
2,958,647	-				+1.0
2,958,656	-				+0.6
2,958,668	+				-0.3
2,958,669	+				-1.1
2,958,670	+				+0.0
2,958,670	+				-0.2
2,958,670	+				+1.2
2,958,670	+				-1.4
2,958,670	+				-0.4
2,958,670	+				-0.2
2,958,670	+				+1.2
2,958,670	+				+0.0
2,958,670	+				-1.2
2,958,675	+				+0.4
2,958,676	-				-1.1
2,958,676	-				+0.4
2,958,677	-				+0.3
2,958,677	-				+1.3
2,958,677	-				-1.5
2,958,677	-				+0.2
2,958,678	+				+0.5
2,958,678	-				+0.7
2,958,678	-				-0.0
2,958,678	-				+0.3
2,958,678	-				-1.3
2,958,678	-				-0.0
2,958,678	-				-0.7
2,958,678	-				-2.4
2,958,678	-				+0.6
2,958,683	-				-0.1
2,958,686	-				-2.0
2,958,700	+				-1.9
2,958,710	+				-0.7
2,958,713	-				+0.1
2,958,717	+				-0.8
2,958,717	+				-0.2
2,958,717	+				-0.0
2,958,725	-				-0.8
2,958,725	-				+0.7
2,958,725	-				+1.7
2,958,725	-				-0.7
2,958,725	-				-1.1
2,958,732	+		GFF2898	0.10	-2.9
2,958,732	+		GFF2898	0.10	-1.2
2,958,732	+		GFF2898	0.10	-0.4
2,958,739	+		GFF2898	0.12	-0.5
2,958,749	+		GFF2898	0.14	+0.6
2,958,749	+		GFF2898	0.14	-1.2
2,958,749	+		GFF2898	0.14	-0.5
2,958,790	+		GFF2898	0.23	+0.0
2,958,794	+		GFF2898	0.24	-0.5
2,958,798	-		GFF2898	0.25	+0.6
2,958,799	+		GFF2898	0.25	+0.2
2,958,827	+		GFF2898	0.31	-0.8
2,958,827	+		GFF2898	0.31	-2.1
2,958,835	-		GFF2898	0.33	-0.3
2,958,835	-		GFF2898	0.33	-2.0
2,958,835	-		GFF2898	0.33	-0.9
2,958,837	+		GFF2898	0.33	-2.0
2,958,854	-		GFF2898	0.37	-0.2
2,958,873	-		GFF2898	0.41	+0.9
2,958,873	-		GFF2898	0.41	-0.5
2,958,883	-		GFF2898	0.43	+0.9
2,958,884	+		GFF2898	0.44	-1.7
2,958,891	+		GFF2898	0.45	+0.6
2,958,899	-		GFF2898	0.47	-0.1
2,958,899	-		GFF2898	0.47	-2.2
2,958,899	-		GFF2898	0.47	+0.3
2,958,921	+		GFF2898	0.52	-1.3
2,958,930	+		GFF2898	0.54	+0.8
2,958,935	+		GFF2898	0.55	-0.6
2,958,938	-		GFF2898	0.55	+0.4
2,958,941	+		GFF2898	0.56	+1.8
2,958,943	-		GFF2898	0.56	-1.4
2,958,957	+		GFF2898	0.59	-1.0
2,958,957	+		GFF2898	0.59	-0.7
2,958,992	-		GFF2898	0.67	-0.3
2,958,992	-		GFF2898	0.67	-1.3
2,959,007	-		GFF2898	0.70	-0.5
2,959,046	+		GFF2898	0.79	-0.5
2,959,055	+		GFF2898	0.81	+0.8
2,959,068	+		GFF2898	0.84	-0.9
2,959,068	+		GFF2898	0.84	+0.1
2,959,076	-		GFF2898	0.85	+0.3
2,959,080	+		GFF2898	0.86	-0.1
2,959,088	-		GFF2898	0.88	-1.1
2,959,088	-		GFF2898	0.88	+0.6
2,959,088	-		GFF2898	0.88	-1.2
2,959,111	+				-1.2
2,959,111	+				+1.3
2,959,111	+				-0.4
2,959,111	+				+0.4
2,959,119	-				-3.1
2,959,119	-				-1.0
2,959,136	+				+0.2
2,959,137	-				-1.6
2,959,141	+				-1.1
2,959,144	-				+1.1
2,959,149	-				-2.8
2,959,150	+				-0.5
2,959,158	-				+0.1
2,959,158	-				-0.3
2,959,913	-		GFF2899	0.80	-0.2
2,960,040	-				+0.4
2,960,064	-				-1.4
2,960,076	-				+0.5
2,960,108	+				-0.7
2,960,111	-				-0.6
2,960,111	-				-0.4