Strain Fitness in Sphingobium sp. HT1-2 around GFF2855

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,910,384	+		GFF2853	0.62	+1.3
2,910,384	+		GFF2853	0.62	-1.4
2,910,387	-		GFF2853	0.62	-0.5
2,910,387	-		GFF2853	0.62	+0.9
2,910,387	-		GFF2853	0.62	+0.1
2,910,387	-		GFF2853	0.62	-1.1
2,910,387	-		GFF2853	0.62	-0.3
2,910,387	-		GFF2853	0.62	-0.9
2,910,387	-		GFF2853	0.62	-1.0
2,910,387	-		GFF2853	0.62	-2.0
2,910,387	-		GFF2853	0.62	-0.0
2,910,387	-		GFF2853	0.62	+0.0
2,910,387	-		GFF2853	0.62	-0.2
2,910,387	-		GFF2853	0.62	+1.4
2,910,424	-		GFF2853	0.64	-0.7
2,910,442	-		GFF2853	0.65	-0.2
2,910,445	+		GFF2853	0.66	-0.2
2,910,463	-		GFF2853	0.67	-0.1
2,910,464	+		GFF2853	0.67	-0.2
2,910,478	-		GFF2853	0.68	+0.1
2,910,488	+		GFF2853	0.69	-0.5
2,910,489	-		GFF2853	0.69	-1.4
2,910,533	-		GFF2853	0.72	-0.3
2,910,576	-		GFF2853	0.74	-0.2
2,910,585	+		GFF2853	0.75	+0.7
2,910,587	+		GFF2853	0.75	-0.5
2,910,602	+		GFF2853	0.76	-1.0
2,910,602	+		GFF2853	0.76	-1.5
2,910,602	+		GFF2853	0.76	-1.2
2,910,610	-		GFF2853	0.77	-1.5
2,910,613	+		GFF2853	0.77	-0.3
2,910,618	+		GFF2853	0.77	-0.6
2,910,623	+		GFF2853	0.77	+0.2
2,910,626	-		GFF2853	0.78	+1.2
2,910,631	-		GFF2853	0.78	+1.3
2,910,645	+		GFF2853	0.79	+0.5
2,910,672	+		GFF2853	0.81	+0.6
2,910,680	-		GFF2853	0.81	-0.0
2,910,680	-		GFF2853	0.81	+1.2
2,910,680	-		GFF2853	0.81	-0.1
2,910,686	-		GFF2853	0.82	+0.8
2,910,687	-		GFF2853	0.82	+0.3
2,910,713	+		GFF2853	0.83	-1.8
2,910,718	-		GFF2853	0.84	-0.2
2,910,727	+		GFF2853	0.84	-0.4
2,910,732	+		GFF2853	0.85	+0.1
2,910,733	+		GFF2853	0.85	+0.1
2,910,741	+		GFF2853	0.85	-0.2
2,910,759	+		GFF2853	0.86	+0.7
2,910,781	-		GFF2853	0.88	+0.8
2,910,797	+		GFF2853	0.89	-0.3
2,910,803	-		GFF2853	0.89	+0.8
2,910,826	+				-1.1
2,910,826	+				-1.6
2,910,826	+				+0.7
2,910,826	+				-3.0
2,910,852	+				-0.2
2,910,852	+				-2.2
2,910,852	+				-0.2
2,910,852	+				-0.2
2,910,852	+				-1.0
2,910,852	+				+0.4
2,910,852	+				+1.0
2,910,855	-				-0.5
2,910,857	+				+0.5
2,910,860	-				+1.4
2,910,860	-				+0.3
2,910,860	-				-1.8
2,910,860	-				+0.6
2,910,860	-				-0.6
2,910,865	-				+0.3
2,910,870	-				+0.1
2,910,884	-				-0.1
2,910,886	-				-0.2
2,910,886	-				+0.9
2,910,895	+				-1.3
2,910,903	-				+0.5
2,910,903	-				+0.2
2,910,909	+				-2.2
2,910,942	+				-0.8
2,910,955	+				+0.1
2,910,974	+				-0.0
2,910,977	-				-0.2
2,910,979	+				+0.4
2,910,979	+				-1.9
2,910,981	-				+0.4
2,910,996	+				+0.9
2,911,006	+		GFF2854	0.11	+0.1
2,911,006	+		GFF2854	0.11	-0.3
2,911,012	+		GFF2854	0.12	+0.4
2,911,012	+		GFF2854	0.12	+0.2
2,911,014	-		GFF2854	0.13	+0.1
2,911,018	+		GFF2854	0.14	+0.8
2,911,026	+		GFF2854	0.16	-0.3
2,911,026	+		GFF2854	0.16	-0.1
2,911,039	+		GFF2854	0.19	+0.6
2,911,085	-		GFF2854	0.29	+0.0
2,911,095	+		GFF2854	0.32	-0.9
2,911,100	+		GFF2854	0.33	+0.7
2,911,126	+		GFF2854	0.39	+0.3
2,911,133	+		GFF2854	0.41	+0.0
2,911,133	+		GFF2854	0.41	+0.1
2,911,134	-		GFF2854	0.41	-1.4
2,911,134	-		GFF2854	0.41	+0.4
2,911,141	-		GFF2854	0.42	+0.2
2,911,164	+		GFF2854	0.48	-0.3
2,911,188	+		GFF2854	0.53	+0.5
2,911,189	+		GFF2854	0.54	+1.4
2,911,189	+		GFF2854	0.54	+0.8
2,911,189	+		GFF2854	0.54	-1.5
2,911,195	-		GFF2854	0.55	-0.5
2,911,197	-		GFF2854	0.55	-1.1
2,911,197	-		GFF2854	0.55	-1.3
2,911,197	-		GFF2854	0.55	+0.4
2,911,197	-		GFF2854	0.55	-1.2
2,911,197	-		GFF2854	0.55	+1.1
2,911,197	-		GFF2854	0.55	-1.5
2,911,197	-		GFF2854	0.55	+1.3
2,911,197	-		GFF2854	0.55	-0.6
2,911,202	-		GFF2854	0.57	-1.6
2,911,245	+		GFF2854	0.67	+0.5
2,911,261	+		GFF2854	0.70	-0.6
2,911,261	+		GFF2854	0.70	+0.5
2,911,264	-		GFF2854	0.71	+0.8
2,911,279	-		GFF2854	0.75	+0.4
2,911,280	+		GFF2854	0.75	+0.6
2,911,280	+		GFF2854	0.75	+0.3
2,911,295	+		GFF2854	0.78	+1.4
2,911,295	+		GFF2854	0.78	-0.1
2,911,295	+		GFF2854	0.78	-0.1
2,911,319	-		GFF2854	0.84	+1.4
2,911,325	+		GFF2854	0.85	+0.3
2,911,325	+		GFF2854	0.85	-0.1
2,911,330	+		GFF2854	0.86	-1.6
2,911,330	+		GFF2854	0.86	-1.4
2,911,333	-		GFF2854	0.87	-1.0
2,911,338	-		GFF2854	0.88	+1.1
2,911,338	-		GFF2854	0.88	-1.9
2,911,397	+				-0.1
2,911,397	+				-1.5
2,911,397	+				+0.5
2,911,403	+				-3.0
2,911,405	-				-0.5
2,911,405	-				-0.7
2,911,405	-				-0.4
2,911,408	+				-1.7
2,911,421	-				-0.1
2,911,421	-				+0.6
2,911,423	+				-2.0
2,911,423	+				+0.2
2,911,449	+				-0.4
2,911,464	-				-1.4
2,911,509	+		GFF2855	0.14	-0.1
2,911,514	+		GFF2855	0.14	+1.4
2,911,514	+		GFF2855	0.14	+1.8
2,911,514	+		GFF2855	0.14	-1.3
2,911,514	+		GFF2855	0.14	-1.6
2,911,520	+		GFF2855	0.15	-2.4
2,911,522	-		GFF2855	0.15	+0.5
2,911,543	+		GFF2855	0.17	-2.2
2,911,550	+		GFF2855	0.18	+1.4
2,911,550	+		GFF2855	0.18	-0.6
2,911,550	+		GFF2855	0.18	-1.6
2,911,550	+		GFF2855	0.18	-1.8
2,911,558	-		GFF2855	0.19	-1.0
2,911,558	-		GFF2855	0.19	+0.3
2,911,560	+		GFF2855	0.19	-0.5
2,911,562	+		GFF2855	0.20	-1.6
2,911,567	+		GFF2855	0.20	-0.2
2,911,567	+		GFF2855	0.20	+0.5
2,911,568	-		GFF2855	0.20	-2.7
2,911,570	-		GFF2855	0.20	+0.2
2,911,570	-		GFF2855	0.20	+2.1
2,911,580	-		GFF2855	0.22	+0.2
2,911,618	-		GFF2855	0.26	-0.0
2,911,626	-		GFF2855	0.27	+0.8
2,911,627	-		GFF2855	0.27	-1.3
2,911,662	-		GFF2855	0.31	-0.7
2,911,704	-		GFF2855	0.35	-1.0
2,911,721	+		GFF2855	0.37	-0.3
2,911,721	+		GFF2855	0.37	-0.1
2,911,721	+		GFF2855	0.37	-0.7
2,911,729	-		GFF2855	0.38	+0.2
2,911,766	+		GFF2855	0.42	-0.4
2,911,774	+		GFF2855	0.43	-0.1
2,911,779	-		GFF2855	0.43	-0.3
2,911,780	+		GFF2855	0.44	+0.5
2,911,780	+		GFF2855	0.44	-1.5
2,911,780	+		GFF2855	0.44	+0.4
2,911,780	+		GFF2855	0.44	-0.0
2,911,780	+		GFF2855	0.44	-0.2
2,911,780	+		GFF2855	0.44	-0.4
2,911,780	-		GFF2855	0.44	-0.6
2,911,788	-		GFF2855	0.44	+0.1
2,911,788	-		GFF2855	0.44	-2.2
2,911,788	-		GFF2855	0.44	-1.9
2,911,788	-		GFF2855	0.44	-0.3
2,911,788	-		GFF2855	0.44	-0.2
2,911,788	-		GFF2855	0.44	-0.5
2,911,833	+		GFF2855	0.49	+1.7
2,911,835	+		GFF2855	0.50	+0.3
2,911,841	-		GFF2855	0.50	+0.2
2,911,844	+		GFF2855	0.51	-0.4
2,911,849	+		GFF2855	0.51	-0.6
2,911,849	+		GFF2855	0.51	-1.6
2,911,854	+		GFF2855	0.52	+0.3
2,911,854	+		GFF2855	0.52	-1.2
2,911,857	-		GFF2855	0.52	+0.2
2,911,859	+		GFF2855	0.52	+0.2
2,911,861	-		GFF2855	0.52	-2.0
2,911,888	-		GFF2855	0.55	+1.0
2,911,903	+		GFF2855	0.57	-2.4
2,911,903	+		GFF2855	0.57	-0.8
2,911,911	-		GFF2855	0.58	+1.5
2,911,911	-		GFF2855	0.58	+0.3
2,911,926	-		GFF2855	0.60	+0.5
2,911,934	+		GFF2855	0.61	+0.9
2,911,969	+		GFF2855	0.64	-1.6
2,911,969	+		GFF2855	0.64	-1.1
2,912,010	-		GFF2855	0.69	+0.4
2,912,015	+		GFF2855	0.69	-0.8
2,912,016	-		GFF2855	0.70	+0.0
2,912,016	-		GFF2855	0.70	-1.0
2,912,033	-		GFF2855	0.71	-0.1
2,912,038	-		GFF2855	0.72	+0.5
2,912,058	-		GFF2855	0.74	-0.2
2,912,072	+		GFF2855	0.76	+1.3
2,912,072	+		GFF2855	0.76	+1.4
2,912,116	+		GFF2855	0.81	+1.2
2,912,145	+		GFF2855	0.84	+0.1
2,912,145	+		GFF2855	0.84	+0.8
2,912,153	-		GFF2855	0.85	-2.4
2,912,153	-		GFF2855	0.85	+0.4
2,912,154	-		GFF2855	0.85	-0.7
2,912,154	-		GFF2855	0.85	-0.9
2,912,154	-		GFF2855	0.85	+0.1
2,912,154	-		GFF2855	0.85	+0.8
2,912,156	+		GFF2855	0.85	+0.3
2,912,156	+		GFF2855	0.85	-0.6
2,912,164	-		GFF2855	0.86	-0.9
2,912,172	-		GFF2855	0.87	-1.5
2,912,176	-		GFF2855	0.87	-0.6
2,912,201	+		GFF2855	0.90	+1.0
2,912,201	+		GFF2855	0.90	-0.6
2,912,206	+				+1.2
2,912,206	+				+0.8
2,912,206	+				-0.0
2,912,206	+				+0.3
2,912,206	+				+0.2
2,912,209	-				-1.4
2,912,209	-				-0.5
2,912,214	-				-0.9
2,912,214	-				-1.0
2,912,256	-				+0.1
2,912,261	+				-1.2
2,912,269	-				-1.4
2,912,269	-				-1.6
2,912,269	-				+1.9
2,912,269	-				-0.3
2,912,274	-				+0.3
2,912,279	-				-0.0
2,912,281	+				-2.5
2,912,281	+				+0.7
2,912,289	-				-0.4
2,912,289	-				-1.6
2,912,316	+				+0.5
2,912,325	+				-1.2
2,912,326	-				-1.7
2,912,349	+				-0.9
2,912,350	-				+0.6
2,912,357	-				-1.6
2,912,389	+		GFF2856	0.12	-1.0
2,912,390	+		GFF2856	0.12	+0.6
2,912,390	+		GFF2856	0.12	-0.1
2,912,390	+		GFF2856	0.12	-0.3
2,912,398	-		GFF2856	0.13	-1.4
2,912,398	-		GFF2856	0.13	+0.8
2,912,398	-		GFF2856	0.13	+0.7
2,912,400	+		GFF2856	0.13	+0.4
2,912,409	+		GFF2856	0.14	-0.2
2,912,424	+		GFF2856	0.16	+0.3
2,912,427	-		GFF2856	0.16	-1.6
2,912,427	-		GFF2856	0.16	+0.1
2,912,432	-		GFF2856	0.17	-0.1
2,912,432	-		GFF2856	0.17	-0.6
2,912,434	+		GFF2856	0.17	-0.1
2,912,468	-		GFF2856	0.21	-2.5
2,912,479	+		GFF2856	0.23	+0.8
2,912,479	+		GFF2856	0.23	-2.6
2,912,508	+		GFF2856	0.26	+1.1
2,912,508	+		GFF2856	0.26	-2.6
2,912,516	-		GFF2856	0.27	-0.6
2,912,516	-		GFF2856	0.27	+1.2
2,912,521	-		GFF2856	0.28	+0.4
2,912,559	+		GFF2856	0.32	-0.9
2,912,584	+		GFF2856	0.35	+1.5
2,912,584	+		GFF2856	0.35	-1.0
2,912,631	+		GFF2856	0.41	-1.2
2,912,651	+		GFF2856	0.43	-0.2
2,912,666	+		GFF2856	0.45	-0.1
2,912,675	-		GFF2856	0.46	-0.4
2,912,680	-		GFF2856	0.47	-1.0
2,912,700	+		GFF2856	0.49	-2.8
2,912,715	-		GFF2856	0.51	-0.6
2,912,747	-		GFF2856	0.55	-0.4
2,912,773	+		GFF2856	0.58	+0.2
2,912,775	+		GFF2856	0.58	-0.1
2,912,783	-		GFF2856	0.59	+0.3
2,912,789	+		GFF2856	0.60	+0.6
2,912,790	+		GFF2856	0.60	-1.4
2,912,790	+		GFF2856	0.60	-0.2
2,912,790	+		GFF2856	0.60	-0.9
2,912,797	-		GFF2856	0.61	-0.7
2,912,826	+		GFF2856	0.64	-1.0
2,912,826	+		GFF2856	0.64	+0.3
2,912,839	-		GFF2856	0.66	-0.3
2,912,844	-		GFF2856	0.66	-0.6
2,912,855	+		GFF2856	0.68	-2.8
2,912,855	+		GFF2856	0.68	-1.5
2,912,870	+		GFF2856	0.70	-0.4
2,912,871	+		GFF2856	0.70	-0.7
2,912,871	+		GFF2856	0.70	+0.8
2,912,871	+		GFF2856	0.70	-1.7
2,912,871	+		GFF2856	0.70	-0.2
2,912,878	-		GFF2856	0.71	-1.4
2,912,879	-		GFF2856	0.71	-0.7
2,912,879	-		GFF2856	0.71	+1.0
2,912,880	+		GFF2856	0.71	+0.0
2,912,882	+		GFF2856	0.71	-1.4
2,912,890	-		GFF2856	0.72	+0.6
2,912,898	+		GFF2856	0.73	+0.2
2,912,903	-		GFF2856	0.74	-1.9
2,912,943	-		GFF2856	0.78	-0.1
2,912,953	-		GFF2856	0.80	-1.9
2,912,955	+		GFF2856	0.80	-2.6
2,912,970	+		GFF2856	0.82	-2.0
2,912,970	+		GFF2856	0.82	-1.5
2,912,970	+		GFF2856	0.82	-0.8
2,912,970	+		GFF2856	0.82	+0.3
2,912,970	+		GFF2856	0.82	-1.1
2,912,978	-		GFF2856	0.83	+1.2
2,912,978	-		GFF2856	0.83	-0.2
2,912,978	-		GFF2856	0.83	+1.4
2,912,978	-		GFF2856	0.83	+0.2
2,912,978	-		GFF2856	0.83	-0.5
2,912,978	-		GFF2856	0.83	+0.8
2,912,978	-		GFF2856	0.83	+0.1
2,912,978	-		GFF2856	0.83	-0.8
2,913,026	+		GFF2856	0.88	-0.6
2,913,051	-				+0.8
2,913,062	+				-0.7
2,913,062	+				+1.6
2,913,093	+				+0.1
2,913,117	+				+0.6
2,913,139	+				-0.1
2,913,139	+				-1.0
2,913,144	+				-1.2
2,913,149	+				-0.0
2,913,149	+				-0.2
2,913,149	+				-0.0
2,913,152	-				-1.2
2,913,152	-				-0.2
2,913,152	-				+0.7
2,913,152	-				-1.3
2,913,152	-				+0.5
2,913,152	-				+1.2
2,913,157	-				-0.1
2,913,157	-				-0.1
2,913,157	-				-0.1
2,913,177	+				+0.2
2,913,180	-				+1.7
2,913,185	+				+0.5
2,913,185	+				+0.8
2,913,193	-				-1.8
2,913,193	-				+0.7
2,913,193	-				+0.6
2,913,193	-				-0.0
2,913,193	-				-0.2
2,913,193	-				-1.8
2,913,193	-				+0.9
2,913,195	+				-0.3
2,913,204	+				+0.5
2,913,218	+				-0.7
2,913,233	-				-0.8
2,913,246	+				+1.0
2,913,250	+				+1.2
2,913,276	+				-1.4
2,913,284	-				-1.3
2,913,291	+				-1.2