Strain Fitness in Sphingobium sp. HT1-2 around GFF2841

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,892,162	-		GFF2840	0.64	-2.1
2,892,162	-		GFF2840	0.64	+0.1
2,892,167	-		GFF2840	0.64	+0.5
2,892,167	-		GFF2840	0.64	+1.0
2,892,172	-		GFF2840	0.64	-0.2
2,892,204	-		GFF2840	0.65	-0.8
2,892,223	+		GFF2840	0.66	-1.4
2,892,228	+		GFF2840	0.66	-0.9
2,892,231	-		GFF2840	0.66	-1.3
2,892,246	+		GFF2840	0.67	+0.1
2,892,307	+		GFF2840	0.69	-0.2
2,892,308	+		GFF2840	0.69	-1.1
2,892,309	+		GFF2840	0.69	+0.7
2,892,310	-		GFF2840	0.69	-0.0
2,892,316	-		GFF2840	0.69	-0.6
2,892,317	-		GFF2840	0.69	+1.3
2,892,317	-		GFF2840	0.69	+0.4
2,892,347	+		GFF2840	0.70	+0.2
2,892,381	-		GFF2840	0.71	+1.3
2,892,381	-		GFF2840	0.71	-1.0
2,892,388	+		GFF2840	0.72	-0.2
2,892,392	-		GFF2840	0.72	+0.1
2,892,392	-		GFF2840	0.72	+0.4
2,892,398	+		GFF2840	0.72	-0.5
2,892,411	-		GFF2840	0.73	+1.9
2,892,421	+		GFF2840	0.73	-0.7
2,892,479	+		GFF2840	0.75	-2.8
2,892,481	-		GFF2840	0.75	+0.2
2,892,499	+		GFF2840	0.76	+0.9
2,892,499	+		GFF2840	0.76	+0.8
2,892,503	-		GFF2840	0.76	-0.6
2,892,516	-		GFF2840	0.76	+0.4
2,892,538	-		GFF2840	0.77	+1.0
2,892,557	+		GFF2840	0.78	-0.4
2,892,557	+		GFF2840	0.78	+0.1
2,892,560	-		GFF2840	0.78	+0.9
2,892,560	-		GFF2840	0.78	+0.0
2,892,561	-		GFF2840	0.78	-0.4
2,892,565	-		GFF2840	0.78	+0.9
2,892,576	-		GFF2840	0.79	-2.8
2,892,619	+		GFF2840	0.80	-1.0
2,892,627	-		GFF2840	0.80	-0.7
2,892,655	+		GFF2840	0.81	+0.0
2,892,675	+		GFF2840	0.82	+0.3
2,892,681	-		GFF2840	0.82	-1.7
2,892,681	-		GFF2840	0.82	-0.5
2,892,683	-		GFF2840	0.82	+0.6
2,892,683	-		GFF2840	0.82	-0.6
2,892,683	-		GFF2840	0.82	-0.7
2,892,685	+		GFF2840	0.83	+0.1
2,892,688	-		GFF2840	0.83	-2.0
2,892,688	-		GFF2840	0.83	+1.9
2,892,688	-		GFF2840	0.83	+0.6
2,892,697	+		GFF2840	0.83	+1.1
2,892,698	-		GFF2840	0.83	-0.1
2,892,705	+		GFF2840	0.83	+0.4
2,892,705	-		GFF2840	0.83	-0.8
2,892,705	-		GFF2840	0.83	-0.5
2,892,713	-		GFF2840	0.84	-0.6
2,892,742	+		GFF2840	0.85	-2.0
2,892,742	+		GFF2840	0.85	-1.1
2,892,743	+		GFF2840	0.85	-0.3
2,892,744	-		GFF2840	0.85	-2.1
2,892,745	-		GFF2840	0.85	+0.1
2,892,750	-		GFF2840	0.85	+0.5
2,892,787	+		GFF2840	0.86	-0.4
2,892,824	-		GFF2840	0.88	-0.9
2,892,847	+		GFF2840	0.88	-0.3
2,892,855	-		GFF2840	0.89	-1.8
2,892,861	+		GFF2840	0.89	+0.2
2,892,869	-		GFF2840	0.89	-0.2
2,892,869	-		GFF2840	0.89	+0.1
2,892,938	+				+1.2
2,892,987	+				-0.9
2,892,995	-				-0.3
2,892,997	+				-0.3
2,892,997	+				+2.3
2,892,997	+				+1.2
2,893,000	-				+0.8
2,893,005	-				+1.4
2,893,006	+				-1.5
2,893,007	+				+1.2
2,893,009	-				-0.1
2,893,009	-				-0.0
2,893,020	+				+0.5
2,893,020	+				-1.3
2,893,028	-				-0.3
2,893,028	-				+0.3
2,893,028	-				+0.6
2,893,037	+				+1.4
2,893,055	+				+0.3
2,893,068	-				-0.9
2,893,077	+				-0.6
2,893,077	+				+0.7
2,893,153	-				-1.5
2,893,157	-				+0.2
2,893,163	-				-0.6
2,893,168	-				+0.1
2,893,170	-				+0.1
2,893,170	-				-1.3
2,893,181	+				-0.4
2,893,189	-				-0.8
2,893,189	-				-1.3
2,893,206	-				-0.9
2,893,232	-				-1.4
2,893,234	+				-0.8
2,893,234	+				-1.4
2,893,234	+				+0.4
2,893,240	+				+0.6
2,893,248	-				+0.7
2,893,258	-				+0.6
2,893,258	-				-0.4
2,893,258	-				-1.3
2,893,265	+				-0.7
2,893,265	+				+0.5
2,893,265	+				+1.0
2,893,265	+				+1.3
2,893,265	+				-0.4
2,893,265	+				+0.6
2,893,265	+				-0.8
2,893,265	+				-1.3
2,893,265	+				+1.0
2,893,265	+				-0.3
2,893,265	+				-0.8
2,893,265	+				-2.1
2,893,265	+				-2.0
2,893,265	+				+0.8
2,893,265	+				+0.1
2,893,265	+				-0.5
2,893,272	-		GFF2841	0.10	-0.2
2,893,273	-		GFF2841	0.10	-1.0
2,893,273	-		GFF2841	0.10	-0.9
2,893,273	-		GFF2841	0.10	+0.6
2,893,273	-		GFF2841	0.10	-0.5
2,893,273	-		GFF2841	0.10	+0.6
2,893,273	-		GFF2841	0.10	-0.4
2,893,273	-		GFF2841	0.10	+0.6
2,893,273	-		GFF2841	0.10	-0.7
2,893,273	-		GFF2841	0.10	-0.6
2,893,273	-		GFF2841	0.10	-0.7
2,893,273	-		GFF2841	0.10	+0.9
2,893,273	-		GFF2841	0.10	+0.0
2,893,273	-		GFF2841	0.10	-2.1
2,893,273	-		GFF2841	0.10	+1.1
2,893,273	-		GFF2841	0.10	+0.2
2,893,273	-		GFF2841	0.10	-0.8
2,893,273	-		GFF2841	0.10	+0.0
2,893,273	-		GFF2841	0.10	+0.9
2,893,273	-		GFF2841	0.10	+1.1
2,893,304	-		GFF2841	0.13	+0.1
2,893,344	+		GFF2841	0.17	+1.5
2,893,360	+		GFF2841	0.18	-0.6
2,893,362	+		GFF2841	0.18	-0.6
2,893,367	+		GFF2841	0.19	-1.6
2,893,367	+		GFF2841	0.19	+0.5
2,893,375	-		GFF2841	0.20	+1.2
2,893,375	-		GFF2841	0.20	-0.4
2,893,385	-		GFF2841	0.20	+1.6
2,893,394	+		GFF2841	0.21	-2.3
2,893,394	+		GFF2841	0.21	-0.6
2,893,394	+		GFF2841	0.21	+0.2
2,893,402	-		GFF2841	0.22	-0.7
2,893,402	-		GFF2841	0.22	-1.1
2,893,418	-		GFF2841	0.23	-0.6
2,893,420	+		GFF2841	0.24	+0.2
2,893,420	+		GFF2841	0.24	+0.4
2,893,420	+		GFF2841	0.24	-0.2
2,893,479	-		GFF2841	0.29	+0.3
2,893,491	+		GFF2841	0.30	-1.5
2,893,509	+		GFF2841	0.32	-0.3
2,893,518	+		GFF2841	0.33	-0.7
2,893,518	+		GFF2841	0.33	-0.8
2,893,521	-		GFF2841	0.33	+0.4
2,893,526	-		GFF2841	0.33	-0.0
2,893,531	-		GFF2841	0.34	-0.5
2,893,531	-		GFF2841	0.34	-2.7
2,893,536	+		GFF2841	0.34	-1.1
2,893,536	-		GFF2841	0.34	+0.9
2,893,541	-		GFF2841	0.35	-1.8
2,893,559	+		GFF2841	0.36	-0.2
2,893,569	+		GFF2841	0.37	-0.8
2,893,569	+		GFF2841	0.37	+0.2
2,893,579	+		GFF2841	0.38	+0.5
2,893,587	-		GFF2841	0.39	-0.0
2,893,611	+		GFF2841	0.41	-0.3
2,893,629	-		GFF2841	0.43	+0.2
2,893,652	-		GFF2841	0.45	+0.4
2,893,682	+		GFF2841	0.48	+1.2
2,893,700	-		GFF2841	0.49	-1.4
2,893,706	+		GFF2841	0.50	+0.4
2,893,719	+		GFF2841	0.51	-0.2
2,893,719	+		GFF2841	0.51	-1.8
2,893,746	+		GFF2841	0.53	-0.3
2,893,766	+		GFF2841	0.55	-1.8
2,893,788	+		GFF2841	0.57	+0.3
2,893,795	+		GFF2841	0.58	-0.1
2,893,795	+		GFF2841	0.58	-1.0
2,893,803	-		GFF2841	0.59	-0.7
2,893,815	-		GFF2841	0.60	-0.8
2,893,829	+		GFF2841	0.61	-0.0
2,893,830	-		GFF2841	0.61	-0.3
2,893,837	-		GFF2841	0.62	-0.9
2,893,847	-		GFF2841	0.63	+0.7
2,893,858	+		GFF2841	0.64	+0.7
2,893,861	+		GFF2841	0.64	-0.8
2,893,866	+		GFF2841	0.64	+0.0
2,893,867	-		GFF2841	0.65	-2.4
2,893,871	+		GFF2841	0.65	+0.2
2,893,871	+		GFF2841	0.65	+0.6
2,893,884	-		GFF2841	0.66	+0.3
2,893,886	+		GFF2841	0.66	+0.1
2,893,886	+		GFF2841	0.66	+0.4
2,893,891	+		GFF2841	0.67	-0.2
2,893,895	-		GFF2841	0.67	-0.3
2,893,913	+		GFF2841	0.69	-0.4
2,893,913	+		GFF2841	0.69	+0.0
2,893,923	+		GFF2841	0.70	+1.8
2,893,923	+		GFF2841	0.70	-1.0
2,893,928	+		GFF2841	0.70	-1.3
2,893,928	+		GFF2841	0.70	-1.7
2,893,928	+		GFF2841	0.70	-0.0
2,893,928	+		GFF2841	0.70	+0.1
2,893,928	+		GFF2841	0.70	+1.2
2,893,928	+		GFF2841	0.70	-1.8
2,893,928	+		GFF2841	0.70	-2.0
2,893,928	+		GFF2841	0.70	+0.9
2,893,936	-		GFF2841	0.71	-0.5
2,893,936	-		GFF2841	0.71	-0.0
2,893,987	+		GFF2841	0.76	-0.4
2,893,990	-		GFF2841	0.76	+1.4
2,893,995	-		GFF2841	0.76	-1.0
2,893,995	-		GFF2841	0.76	+0.5
2,894,039	+		GFF2841	0.80	+0.3
2,894,047	-		GFF2841	0.81	+0.2
2,894,061	-		GFF2841	0.82	-1.0
2,894,072	+		GFF2841	0.83	-0.0
2,894,072	+		GFF2841	0.83	+0.2
2,894,072	+		GFF2841	0.83	+0.0
2,894,072	+		GFF2841	0.83	+0.0
2,894,080	-		GFF2841	0.84	-0.1
2,894,100	-		GFF2841	0.86	-1.7
2,894,147	+				-0.9
2,894,148	-				-0.9
2,894,155	-				-0.7
2,894,155	-				+1.0
2,894,177	+				-1.3
2,894,177	+				-0.7
2,894,185	-				-2.6
2,894,185	-				-0.2
2,894,185	-				+0.3
2,894,185	-				-1.3
2,894,190	+				-0.5
2,894,195	+				+0.1
2,894,198	-				-0.5
2,894,221	-				-0.4
2,894,254	+				-0.6
2,894,308	-				+0.5
2,894,318	+				+0.4
2,894,318	+				-0.2
2,894,321	-				-1.8
2,894,321	-				-1.2
2,894,323	+				+0.6
2,894,323	+				+0.3
2,894,331	-				-0.3
2,894,337	-				-0.4
2,894,340	+				-1.4
2,894,362	+				-0.5
2,894,362	+				-0.7
2,894,362	+				+0.8
2,894,368	+				+0.4
2,894,370	-				+1.2
2,894,386	-				+1.4
2,894,414	+		GFF2842	0.11	-0.2
2,894,414	+		GFF2842	0.11	+0.0
2,894,414	+		GFF2842	0.11	-1.5
2,894,414	+		GFF2842	0.11	-0.5
2,894,422	-		GFF2842	0.11	+0.6
2,894,422	-		GFF2842	0.11	+0.0
2,894,422	-		GFF2842	0.11	+1.0
2,894,422	-		GFF2842	0.11	-0.1
2,894,451	-		GFF2842	0.13	-1.5
2,894,453	-		GFF2842	0.13	-0.4
2,894,474	+		GFF2842	0.15	+0.7
2,894,487	-		GFF2842	0.16	+0.1
2,894,508	-		GFF2842	0.17	+0.1
2,894,508	-		GFF2842	0.17	+0.7
2,894,516	-		GFF2842	0.18	-0.9
2,894,518	+		GFF2842	0.18	+0.2
2,894,527	+		GFF2842	0.18	+1.9
2,894,535	-		GFF2842	0.19	+0.9
2,894,535	-		GFF2842	0.19	-1.9
2,894,535	-		GFF2842	0.19	+0.3
2,894,535	-		GFF2842	0.19	-0.9
2,894,540	+		GFF2842	0.19	-0.9
2,894,553	+		GFF2842	0.20	-1.0
2,894,593	+		GFF2842	0.23	+1.6
2,894,597	+		GFF2842	0.23	-2.2
2,894,607	+		GFF2842	0.24	+0.1
2,894,644	+		GFF2842	0.26	+0.1
2,894,644	+		GFF2842	0.26	-1.1
2,894,644	+		GFF2842	0.26	+0.3
2,894,644	+		GFF2842	0.26	+0.4
2,894,644	+		GFF2842	0.26	+0.0
2,894,644	+		GFF2842	0.26	-2.2
2,894,644	+		GFF2842	0.26	-1.4
2,894,644	+		GFF2842	0.26	+0.8
2,894,644	+		GFF2842	0.26	-0.1
2,894,644	+		GFF2842	0.26	-1.0
2,894,644	+		GFF2842	0.26	+0.3
2,894,644	+		GFF2842	0.26	-0.3
2,894,644	+		GFF2842	0.26	-2.0
2,894,652	-		GFF2842	0.27	-0.4
2,894,652	-		GFF2842	0.27	+0.6
2,894,652	-		GFF2842	0.27	-0.9
2,894,652	-		GFF2842	0.27	+0.6
2,894,652	-		GFF2842	0.27	-0.5
2,894,652	-		GFF2842	0.27	+0.5
2,894,652	-		GFF2842	0.27	+0.6
2,894,652	-		GFF2842	0.27	-0.4
2,894,652	-		GFF2842	0.27	+0.4
2,894,652	-		GFF2842	0.27	+2.2
2,894,652	-		GFF2842	0.27	+0.8
2,894,652	-		GFF2842	0.27	-1.7
2,894,652	-		GFF2842	0.27	-0.5
2,894,652	-		GFF2842	0.27	-0.4
2,894,652	-		GFF2842	0.27	+0.5
2,894,652	-		GFF2842	0.27	+0.4
2,894,652	-		GFF2842	0.27	-0.8
2,894,652	-		GFF2842	0.27	-0.8
2,894,652	-		GFF2842	0.27	+0.2
2,894,654	+		GFF2842	0.27	-0.9
2,894,668	-		GFF2842	0.28	-0.2
2,894,679	+		GFF2842	0.28	-0.6
2,894,679	+		GFF2842	0.28	+0.4
2,894,679	+		GFF2842	0.28	-2.3
2,894,679	+		GFF2842	0.28	-0.1
2,894,718	+		GFF2842	0.31	+0.4
2,894,725	-		GFF2842	0.32	+0.5
2,894,725	-		GFF2842	0.32	+1.0
2,894,735	-		GFF2842	0.32	+0.1
2,894,747	-		GFF2842	0.33	+1.3
2,894,750	+		GFF2842	0.33	+1.0
2,894,753	-		GFF2842	0.33	-0.9
2,894,758	-		GFF2842	0.34	+0.0
2,894,780	-		GFF2842	0.35	-1.4
2,894,780	-		GFF2842	0.35	-1.2
2,894,790	-		GFF2842	0.36	+0.2
2,894,824	-		GFF2842	0.38	+0.9
2,894,830	+		GFF2842	0.39	+0.2
2,894,836	+		GFF2842	0.39	-1.7
2,894,839	-		GFF2842	0.39	-0.5
2,894,850	-		GFF2842	0.40	+0.7
2,894,852	-		GFF2842	0.40	-1.3
2,894,860	-		GFF2842	0.41	-1.0
2,894,860	-		GFF2842	0.41	-0.9
2,894,884	-		GFF2842	0.42	+0.6
2,894,930	-		GFF2842	0.45	+0.6
2,894,943	-		GFF2842	0.46	+0.0
2,894,982	+		GFF2842	0.49	-1.3
2,894,982	+		GFF2842	0.49	+0.2
2,894,984	-		GFF2842	0.49	+0.0
2,894,988	-		GFF2842	0.49	-0.2
2,894,990	-		GFF2842	0.49	-1.2
2,894,990	-		GFF2842	0.49	-1.1
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