Strain Fitness in Sphingobium sp. HT1-2 around GFF2782

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,817,246	+		GFF2781	0.45	+0.1
2,817,250	-		GFF2781	0.45	+0.2
2,817,251	-		GFF2781	0.45	-1.8
2,817,254	-		GFF2781	0.45	+0.5
2,817,290	+		GFF2781	0.47	-0.1
2,817,291	+		GFF2781	0.47	-0.3
2,817,299	-		GFF2781	0.48	-0.6
2,817,304	+		GFF2781	0.48	-0.4
2,817,334	+		GFF2781	0.50	-1.3
2,817,336	+		GFF2781	0.50	+0.2
2,817,336	+		GFF2781	0.50	-1.6
2,817,336	+		GFF2781	0.50	-2.0
2,817,336	+		GFF2781	0.50	-1.1
2,817,344	-		GFF2781	0.50	+0.1
2,817,344	-		GFF2781	0.50	-2.7
2,817,344	-		GFF2781	0.50	-1.3
2,817,344	-		GFF2781	0.50	-0.8
2,817,344	-		GFF2781	0.50	-1.3
2,817,344	-		GFF2781	0.50	-2.2
2,817,344	-		GFF2781	0.50	+1.0
2,817,344	-		GFF2781	0.50	-1.8
2,817,344	-		GFF2781	0.50	-2.3
2,817,344	-		GFF2781	0.50	-1.1
2,817,344	-		GFF2781	0.50	-1.6
2,817,344	-		GFF2781	0.50	-0.8
2,817,344	-		GFF2781	0.50	+1.9
2,817,345	-		GFF2781	0.51	-0.6
2,817,389	+		GFF2781	0.53	-1.2
2,817,394	+		GFF2781	0.53	-0.9
2,817,397	-		GFF2781	0.54	-2.3
2,817,402	-		GFF2781	0.54	-1.2
2,817,412	-		GFF2781	0.54	-0.8
2,817,429	-		GFF2781	0.55	-1.7
2,817,439	-		GFF2781	0.56	-1.4
2,817,439	-		GFF2781	0.56	-0.5
2,817,440	+		GFF2781	0.56	-0.6
2,817,441	-		GFF2781	0.56	-2.1
2,817,441	-		GFF2781	0.56	-0.1
2,817,448	-		GFF2781	0.56	+0.4
2,817,449	-		GFF2781	0.56	+0.5
2,817,476	+		GFF2781	0.58	-1.1
2,817,507	-		GFF2781	0.60	-0.4
2,817,568	+		GFF2781	0.63	+0.4
2,817,571	-		GFF2781	0.63	-0.8
2,817,575	+		GFF2781	0.64	-0.7
2,817,577	+		GFF2781	0.64	-0.8
2,817,577	+		GFF2781	0.64	+1.0
2,817,577	+		GFF2781	0.64	+0.1
2,817,577	+		GFF2781	0.64	-2.3
2,817,577	+		GFF2781	0.64	-0.1
2,817,579	-		GFF2781	0.64	-0.2
2,817,582	+		GFF2781	0.64	+0.4
2,817,585	-		GFF2781	0.64	-0.4
2,817,590	+		GFF2781	0.65	+1.2
2,817,598	-		GFF2781	0.65	-0.5
2,817,604	+		GFF2781	0.65	-1.0
2,817,613	+		GFF2781	0.66	-1.1
2,817,645	+		GFF2781	0.68	-1.7
2,817,647	+		GFF2781	0.68	+0.0
2,817,655	-		GFF2781	0.68	-0.4
2,817,655	-		GFF2781	0.68	+0.1
2,817,655	-		GFF2781	0.68	-0.9
2,817,660	+		GFF2781	0.68	-0.1
2,817,660	+		GFF2781	0.68	+0.4
2,817,660	+		GFF2781	0.68	-0.2
2,817,660	+		GFF2781	0.68	-0.1
2,817,660	+		GFF2781	0.68	+0.9
2,817,660	+		GFF2781	0.68	-0.6
2,817,663	-		GFF2781	0.69	-0.9
2,817,668	-		GFF2781	0.69	+1.0
2,817,668	-		GFF2781	0.69	+0.8
2,817,668	-		GFF2781	0.69	-2.7
2,817,731	+		GFF2781	0.73	+0.6
2,817,741	+		GFF2781	0.73	-0.0
2,817,741	+		GFF2781	0.73	+1.0
2,817,741	+		GFF2781	0.73	+0.2
2,817,741	+		GFF2781	0.73	-0.3
2,817,741	+		GFF2781	0.73	-1.2
2,817,741	+		GFF2781	0.73	-0.3
2,817,741	+		GFF2781	0.73	+0.7
2,817,741	+		GFF2781	0.73	-1.1
2,817,741	+		GFF2781	0.73	-0.4
2,817,741	+		GFF2781	0.73	+0.1
2,817,741	+		GFF2781	0.73	-0.9
2,817,741	+		GFF2781	0.73	+0.9
2,817,741	+		GFF2781	0.73	-2.0
2,817,744	-		GFF2781	0.73	-2.5
2,817,749	-		GFF2781	0.74	+0.1
2,817,749	-		GFF2781	0.74	-1.4
2,817,749	-		GFF2781	0.74	-0.4
2,817,749	-		GFF2781	0.74	+0.8
2,817,749	-		GFF2781	0.74	-0.0
2,817,749	-		GFF2781	0.74	-0.8
2,817,749	-		GFF2781	0.74	+0.7
2,817,749	-		GFF2781	0.74	-0.5
2,817,767	-		GFF2781	0.75	+0.9
2,817,774	+		GFF2781	0.75	+0.4
2,817,775	-		GFF2781	0.75	+0.4
2,817,784	+		GFF2781	0.76	+0.3
2,817,826	+		GFF2781	0.78	-0.3
2,817,828	+		GFF2781	0.78	-1.0
2,817,833	+		GFF2781	0.78	+0.5
2,817,834	-		GFF2781	0.78	+0.3
2,817,841	-		GFF2781	0.79	-1.6
2,817,842	-		GFF2781	0.79	-1.0
2,817,853	+		GFF2781	0.79	-0.7
2,817,853	+		GFF2781	0.79	+1.1
2,817,870	+		GFF2781	0.80	-0.9
2,817,882	+		GFF2781	0.81	+0.4
2,817,882	+		GFF2781	0.81	+1.2
2,817,882	+		GFF2781	0.81	+0.6
2,817,882	+		GFF2781	0.81	-1.4
2,817,882	+		GFF2781	0.81	-0.1
2,817,882	+		GFF2781	0.81	+0.2
2,817,882	+		GFF2781	0.81	-0.6
2,817,882	+		GFF2781	0.81	+0.1
2,817,890	-		GFF2781	0.82	-0.3
2,817,890	-		GFF2781	0.82	-1.2
2,817,890	-		GFF2781	0.82	-1.2
2,817,927	+		GFF2781	0.84	+0.7
2,817,928	+		GFF2781	0.84	-0.9
2,817,928	+		GFF2781	0.84	-0.3
2,817,930	+		GFF2781	0.84	+0.8
2,817,930	+		GFF2781	0.84	+0.4
2,817,935	-		GFF2781	0.84	-1.1
2,817,938	-		GFF2781	0.84	-1.7
2,817,940	+		GFF2781	0.84	+0.6
2,817,945	+		GFF2781	0.85	-0.4
2,817,950	-		GFF2781	0.85	+0.1
2,817,979	+		GFF2781	0.87	-1.1
2,817,979	+		GFF2781	0.87	-0.5
2,817,979	+		GFF2781	0.87	+0.6
2,817,985	+		GFF2781	0.87	-0.7
2,817,985	-		GFF2781	0.87	+0.1
2,817,985	-		GFF2781	0.87	-0.1
2,817,987	-		GFF2781	0.87	-1.8
2,817,987	-		GFF2781	0.87	+0.2
2,817,987	-		GFF2781	0.87	-2.1
2,817,989	+		GFF2781	0.87	-1.7
2,818,021	+		GFF2781	0.89	-1.1
2,818,032	+		GFF2781	0.90	-1.2
2,818,032	+		GFF2781	0.90	+1.3
2,818,033	+		GFF2781	0.90	-1.5
2,818,040	-				-0.1
2,818,040	-				-1.0
2,818,040	-				-0.7
2,818,043	+				-1.3
2,818,043	+				+2.1
2,818,043	+				-0.2
2,818,043	+				-0.7
2,818,043	+				+0.1
2,818,043	+				+1.0
2,818,043	+				+0.0
2,818,043	+				+0.6
2,818,043	+				+0.6
2,818,043	+				+1.6
2,818,043	+				-0.5
2,818,043	+				-0.5
2,818,043	+				+0.3
2,818,043	+				+0.3
2,818,043	+				-2.0
2,818,047	+				-0.7
2,818,051	-				-0.1
2,818,051	-				+0.1
2,818,051	-				-1.9
2,818,051	-				-0.1
2,818,051	-				-2.8
2,818,051	-				-1.3
2,818,051	-				+0.5
2,818,053	+				-0.6
2,818,056	-				-0.3
2,818,056	-				-0.6
2,818,070	+				-0.2
2,818,070	+				-0.6
2,818,078	-				+1.6
2,818,078	-				-2.9
2,818,078	-				-0.1
2,818,090	+				+0.3
2,818,113	-				+0.4
2,818,114	-				+0.3
2,818,126	+				-1.2
2,818,137	-				-1.4
2,818,150	+				+0.2
2,818,157	+				-0.6
2,818,157	-				-1.5
2,818,179	-				+0.3
2,818,180	+				+1.3
2,818,239	+				-2.1
2,818,239	+				-1.3
2,818,247	-				+0.6
2,818,250	+				-1.7
2,818,258	-				+1.3
2,818,258	-				-1.5
2,818,285	+				-1.5
2,818,292	+				-0.9
2,818,292	+				+0.4
2,818,305	+		GFF2782	0.10	-2.0
2,818,331	+		GFF2782	0.14	-0.5
2,818,331	+		GFF2782	0.14	+0.2
2,818,331	+		GFF2782	0.14	-1.1
2,818,339	-		GFF2782	0.15	-0.1
2,818,339	-		GFF2782	0.15	-0.7
2,818,341	+		GFF2782	0.15	+1.4
2,818,349	-		GFF2782	0.16	-2.4
2,818,359	-		GFF2782	0.17	-0.2
2,818,380	+		GFF2782	0.20	-0.9
2,818,397	+		GFF2782	0.22	-2.0
2,818,400	-		GFF2782	0.23	-1.1
2,818,405	-		GFF2782	0.23	-2.4
2,818,405	-		GFF2782	0.23	-1.5
2,818,410	-		GFF2782	0.24	-0.9
2,818,415	-		GFF2782	0.25	-1.0
2,818,415	-		GFF2782	0.25	-1.6
2,818,422	+		GFF2782	0.26	-0.2
2,818,422	+		GFF2782	0.26	-1.6
2,818,456	+		GFF2782	0.30	-1.0
2,818,494	+		GFF2782	0.35	+0.8
2,818,524	-		GFF2782	0.39	-1.4
2,818,524	-		GFF2782	0.39	-0.2
2,818,548	+		GFF2782	0.42	-0.8
2,818,556	-		GFF2782	0.43	-0.8
2,818,564	-		GFF2782	0.44	-2.1
2,818,572	+		GFF2782	0.45	+0.5
2,818,594	-		GFF2782	0.48	-1.8
2,818,602	-		GFF2782	0.49	-1.9
2,818,631	+		GFF2782	0.53	-1.1
2,818,654	+		GFF2782	0.56	-0.5
2,818,662	-		GFF2782	0.57	-0.3
2,818,670	+		GFF2782	0.58	+1.3
2,818,675	+		GFF2782	0.58	-0.1
2,818,678	-		GFF2782	0.59	-1.5
2,818,694	+		GFF2782	0.61	-0.1
2,818,694	+		GFF2782	0.61	-0.2
2,818,699	+		GFF2782	0.62	-0.9
2,818,699	+		GFF2782	0.62	-2.3
2,818,699	+		GFF2782	0.62	-2.2
2,818,699	+		GFF2782	0.62	+0.4
2,818,701	+		GFF2782	0.62	-0.9
2,818,701	+		GFF2782	0.62	-0.7
2,818,702	-		GFF2782	0.62	-3.2
2,818,702	-		GFF2782	0.62	-0.9
2,818,723	+		GFF2782	0.65	-0.1
2,818,759	-		GFF2782	0.69	-0.7
2,818,761	+		GFF2782	0.70	-1.5
2,818,786	-		GFF2782	0.73	-2.9
2,818,805	-		GFF2782	0.75	-1.8
2,818,810	+		GFF2782	0.76	-2.3
2,818,810	+		GFF2782	0.76	-1.8
2,818,810	+		GFF2782	0.76	-0.9
2,818,810	+		GFF2782	0.76	-0.6
2,818,818	-		GFF2782	0.77	+0.1
2,818,818	-		GFF2782	0.77	-0.8
2,818,818	-		GFF2782	0.77	-0.5
2,818,820	+		GFF2782	0.77	-1.1
2,818,820	+		GFF2782	0.77	-0.6
2,818,820	+		GFF2782	0.77	-0.2
2,818,820	+		GFF2782	0.77	-0.2
2,818,820	+		GFF2782	0.77	-0.5
2,818,827	-		GFF2782	0.78	-1.5
2,818,828	-		GFF2782	0.78	-1.5
2,818,828	-		GFF2782	0.78	-0.6
2,818,828	-		GFF2782	0.78	-1.9
2,818,828	-		GFF2782	0.78	-0.9
2,818,830	+		GFF2782	0.79	-0.6
2,818,833	-		GFF2782	0.79	-0.1
2,818,835	+		GFF2782	0.79	-2.1
2,818,858	+		GFF2782	0.82	-2.3
2,818,862	+		GFF2782	0.83	+0.2
2,818,863	+		GFF2782	0.83	-1.1
2,818,863	+		GFF2782	0.83	-1.6
2,818,871	-		GFF2782	0.84	-1.4
2,818,871	-		GFF2782	0.84	-2.7
2,818,898	-		GFF2782	0.88	-0.9
2,818,912	-		GFF2782	0.89	-0.3
2,818,924	+				-0.4
2,818,924	+				-1.3
2,818,931	+				-2.0
2,818,932	-				-1.3
2,818,973	+				-1.5
2,818,990	-				-0.7
2,819,092	+				-0.3
2,819,092	-				+0.4
2,819,092	-				+0.8
2,819,094	+				-0.5
2,819,096	+				-0.5
2,819,104	+				-0.9
2,819,104	+				-0.3
2,819,112	-				+0.1
2,819,112	-				-1.3
2,819,115	+				+0.2
2,819,115	+				-0.4
2,819,123	-				-0.8
2,819,129	+				+0.3
2,819,129	+				+0.1
2,819,137	-				+0.8
2,819,137	-				-0.1
2,819,137	-				-0.2
2,819,139	+				+1.3
2,819,139	+				+0.2
2,819,139	+				-0.6
2,819,139	+				+0.2
2,819,139	+				-1.8
2,819,139	+				-0.4
2,819,139	+				+0.5
2,819,139	+				-0.6
2,819,139	+				+0.1
2,819,147	-				-0.3
2,819,147	-				+0.0
2,819,147	-				-0.6
2,819,147	-				+1.1
2,819,147	-				+1.0
2,819,147	-				+0.1
2,819,147	-				+0.3
2,819,147	-				-0.4
2,819,147	-				-0.4
2,819,147	-				+1.3
2,819,147	-				+0.7
2,819,147	-				-1.9
2,819,149	+				-0.7
2,819,149	+				+2.3
2,819,149	+				+0.4
2,819,149	+				-0.5
2,819,149	+				+1.0
2,819,149	+				+0.9
2,819,149	+				+0.9
2,819,149	+				-1.6
2,819,149	+				+0.7
2,819,152	-				-0.7
2,819,157	-				-1.5
2,819,157	-				+1.3
2,819,157	-				-0.6
2,819,157	-				+1.4
2,819,157	-				-3.2
2,819,157	-				+0.5
2,819,157	-				-0.1
2,819,157	-				-0.1
2,819,157	-				-1.6
2,819,162	+				-0.6
2,819,184	-				+0.5
2,819,184	-				-0.1
2,819,184	-				-1.8
2,819,245	+		GFF2783	0.15	-0.9
2,819,252	+		GFF2783	0.16	-1.6
2,819,252	+		GFF2783	0.16	-0.5
2,819,295	-		GFF2783	0.23	-0.1
2,819,297	+		GFF2783	0.24	-0.7
2,819,314	+		GFF2783	0.26	-0.4
2,819,315	-		GFF2783	0.27	-0.3
2,819,322	-		GFF2783	0.28	+1.1
2,819,340	+		GFF2783	0.31	+0.4
2,819,382	+		GFF2783	0.37	-0.1
2,819,432	-		GFF2783	0.45	-0.2
2,819,434	+		GFF2783	0.46	-1.3
2,819,442	-		GFF2783	0.47	-0.1
2,819,442	-		GFF2783	0.47	-2.1
2,819,442	-		GFF2783	0.47	+1.0
2,819,442	-		GFF2783	0.47	+0.9
2,819,460	+		GFF2783	0.50	-2.0
2,819,518	+		GFF2783	0.59	+0.9
2,819,518	+		GFF2783	0.59	-0.4
2,819,526	+		GFF2783	0.61	+0.3
2,819,554	-		GFF2783	0.65	-0.3
2,819,556	+		GFF2783	0.66	-1.7
2,819,564	-		GFF2783	0.67	-0.1
2,819,592	+		GFF2783	0.71	+0.2
2,819,596	-		GFF2783	0.72	+0.4
2,819,602	+		GFF2783	0.73	-0.5
2,819,602	+		GFF2783	0.73	+1.1
2,819,615	-		GFF2783	0.75	-0.8
2,819,656	-		GFF2783	0.82	-1.0
2,819,660	+		GFF2783	0.82	-2.1
2,819,661	-		GFF2783	0.83	+0.7
2,819,671	-		GFF2783	0.84	+0.3
2,819,682	+		GFF2783	0.86	-0.3
2,819,682	+		GFF2783	0.86	+0.4
2,819,682	+		GFF2783	0.86	+0.9
2,819,682	+		GFF2783	0.86	-0.6
2,819,682	+		GFF2783	0.86	+0.4
2,819,690	-		GFF2783	0.87	+0.3
2,819,690	-		GFF2783	0.87	-1.9
2,819,695	-		GFF2783	0.88	-0.2
2,819,717	-				+1.6
2,819,725	+				-1.6
2,819,749	+				-1.4
2,819,749	+				+1.2
2,819,757	-				+0.2
2,819,757	-				-2.6
2,819,775	+				-1.7
2,819,795	+				-0.1
2,819,797	+				-0.6
2,819,800	+				-0.3
2,819,800	+				-0.6
2,819,805	-				+0.1
2,819,808	-				-0.2
2,819,868	+		GFF2784	0.16	-0.5
2,819,868	+		GFF2784	0.16	-1.3
2,819,873	+		GFF2784	0.17	-1.6
2,819,888	-		GFF2784	0.19	-0.3
2,819,912	-		GFF2784	0.23	-1.8
2,819,928	+		GFF2784	0.25	-0.6
2,819,928	+		GFF2784	0.25	-0.2
2,819,928	+		GFF2784	0.25	-0.6
2,819,928	+		GFF2784	0.25	-1.8
2,819,936	-		GFF2784	0.26	+1.2
2,819,936	-		GFF2784	0.26	+0.1
2,819,936	-		GFF2784	0.26	+0.3
2,819,936	-		GFF2784	0.26	+0.3
2,819,963	-		GFF2784	0.31	-2.6