Strain Fitness in Sphingobium sp. HT1-2 around GFF2777

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,811,447	+		GFF2776	0.56	-1.9
2,811,447	+		GFF2776	0.56	-0.7
2,811,447	+		GFF2776	0.56	+0.7
2,811,517	-		GFF2776	0.60	+0.1
2,811,547	-		GFF2776	0.61	-1.4
2,811,564	+		GFF2776	0.62	+0.5
2,811,630	-		GFF2776	0.65	+0.6
2,811,640	+		GFF2776	0.66	+0.5
2,811,645	-		GFF2776	0.66	+1.4
2,811,654	+		GFF2776	0.67	+0.9
2,811,660	-		GFF2776	0.67	+1.8
2,811,683	-		GFF2776	0.68	+0.2
2,811,706	-		GFF2776	0.69	+0.6
2,811,709	+		GFF2776	0.69	+0.4
2,811,716	-		GFF2776	0.70	+0.4
2,811,732	+		GFF2776	0.71	+0.3
2,811,738	-		GFF2776	0.71	-0.5
2,811,742	+		GFF2776	0.71	+0.4
2,811,745	-		GFF2776	0.71	+0.1
2,811,750	-		GFF2776	0.71	-0.5
2,811,750	-		GFF2776	0.71	-1.3
2,811,750	-		GFF2776	0.71	+0.9
2,811,750	-		GFF2776	0.71	+0.6
2,811,750	-		GFF2776	0.71	-0.1
2,811,755	-		GFF2776	0.72	-0.1
2,811,761	-		GFF2776	0.72	+1.4
2,811,771	+		GFF2776	0.72	+0.8
2,811,836	+		GFF2776	0.76	-1.6
2,811,836	+		GFF2776	0.76	-1.2
2,811,836	+		GFF2776	0.76	+1.2
2,811,836	+		GFF2776	0.76	-0.2
2,811,836	+		GFF2776	0.76	+1.6
2,811,841	+		GFF2776	0.76	+1.0
2,811,846	+		GFF2776	0.76	+0.1
2,811,905	+		GFF2776	0.79	+0.0
2,811,913	-		GFF2776	0.79	-1.1
2,811,913	-		GFF2776	0.79	-0.6
2,811,913	-		GFF2776	0.79	-1.8
2,811,923	-		GFF2776	0.80	-0.7
2,811,983	+		GFF2776	0.83	-0.1
2,811,983	+		GFF2776	0.83	+0.2
2,811,983	+		GFF2776	0.83	-0.3
2,811,993	+		GFF2776	0.83	-0.4
2,811,993	+		GFF2776	0.83	+0.2
2,811,993	+		GFF2776	0.83	-2.1
2,811,993	+		GFF2776	0.83	-0.1
2,811,993	+		GFF2776	0.83	-0.5
2,811,996	+		GFF2776	0.84	+0.7
2,811,996	+		GFF2776	0.84	+0.5
2,812,011	+		GFF2776	0.84	-0.8
2,812,016	+		GFF2776	0.85	+0.7
2,812,016	+		GFF2776	0.85	+1.0
2,812,024	-		GFF2776	0.85	-0.6
2,812,024	-		GFF2776	0.85	-1.3
2,812,024	-		GFF2776	0.85	-0.5
2,812,064	-		GFF2776	0.87	+0.4
2,812,111	-		GFF2776	0.89	-0.4
2,812,118	+		GFF2776	0.90	+0.0
2,812,120	+		GFF2776	0.90	+1.1
2,812,144	-				+0.0
2,812,150	-				+0.8
2,812,151	-				-0.3
2,812,152	-				+1.1
2,812,174	+				-0.3
2,812,175	-				-0.5
2,812,187	-				+1.4
2,812,200	+				-1.2
2,812,201	+				+0.7
2,812,237	+				-0.3
2,812,243	+				+0.4
2,812,256	-				-0.7
2,812,264	-				+0.4
2,812,273	-				+0.2
2,812,293	-				-1.3
2,812,299	+				-0.9
2,812,314	+				+0.0
2,812,314	+				+0.1
2,812,314	+				+1.2
2,812,322	-				-0.5
2,812,322	-				+1.4
2,812,327	+				-0.5
2,812,327	+				+0.2
2,812,327	+				-0.3
2,812,335	-				-0.2
2,812,335	-				-2.0
2,812,340	-				-0.8
2,812,358	-				-0.3
2,812,380	-				+0.3
2,812,382	+				+0.4
2,812,382	+				-0.6
2,812,388	-				-1.2
2,812,390	-				+0.9
2,812,421	+				-1.1
2,812,426	+				+0.0
2,812,434	-				+1.2
2,812,436	+				+0.3
2,812,436	-				-1.4
2,812,438	+				-1.8
2,812,444	-				-2.4
2,812,446	-				-0.9
2,812,449	-				-1.2
2,812,466	+				-0.1
2,812,497	+				-0.7
2,812,505	-				+0.3
2,812,505	-				-0.1
2,812,505	-				-1.1
2,812,505	-				-0.1
2,812,530	+				-0.2
2,812,530	+				-1.2
2,812,530	+				+0.8
2,812,538	-				-1.3
2,812,543	+				+0.4
2,812,548	+				-0.4
2,812,548	+				-0.0
2,812,548	-				-1.6
2,812,553	+				+0.6
2,812,556	-				-1.6
2,812,556	-				-2.1
2,812,556	-				+0.4
2,812,556	-				+0.5
2,812,558	+				-1.3
2,812,558	+				-0.7
2,812,558	+				+0.6
2,812,558	+				+0.2
2,812,560	-				+0.3
2,812,563	+				+0.4
2,812,563	+				+0.1
2,812,563	+				+0.5
2,812,563	+				+0.3
2,812,563	+				+0.1
2,812,563	+				-1.1
2,812,563	+				+0.1
2,812,563	+				-0.4
2,812,563	+				-0.9
2,812,563	+				-0.1
2,812,563	+				-0.4
2,812,563	+				-0.9
2,812,566	-				-1.3
2,812,571	-				-1.0
2,812,571	-				-1.8
2,812,571	-				+0.4
2,812,571	-				-0.5
2,812,571	-				+0.7
2,812,571	-				-0.1
2,812,571	-				+0.1
2,812,571	-				+0.8
2,812,571	-				+1.2
2,812,571	-				-1.2
2,812,571	-				-2.1
2,812,571	-				-2.9
2,812,571	-				+0.4
2,812,598	+		GFF2777	0.12	-2.1
2,812,598	+		GFF2777	0.12	-1.8
2,812,611	+		GFF2777	0.13	+0.0
2,812,625	+		GFF2777	0.14	-0.3
2,812,633	-		GFF2777	0.14	+1.4
2,812,637	-		GFF2777	0.15	-1.5
2,812,639	+		GFF2777	0.15	-0.7
2,812,644	+		GFF2777	0.15	-2.6
2,812,644	+		GFF2777	0.15	-2.0
2,812,652	-		GFF2777	0.16	-0.5
2,812,689	+		GFF2777	0.18	+0.0
2,812,695	-		GFF2777	0.19	+0.4
2,812,695	-		GFF2777	0.19	+0.3
2,812,695	-		GFF2777	0.19	-1.8
2,812,695	-		GFF2777	0.19	-0.6
2,812,736	+		GFF2777	0.22	+1.1
2,812,736	+		GFF2777	0.22	+1.5
2,812,744	-		GFF2777	0.22	-1.4
2,812,744	-		GFF2777	0.22	+0.2
2,812,747	+		GFF2777	0.23	-1.1
2,812,752	+		GFF2777	0.23	+0.1
2,812,765	-		GFF2777	0.24	-0.3
2,812,767	+		GFF2777	0.24	-1.3
2,812,801	+		GFF2777	0.27	-0.6
2,812,814	-		GFF2777	0.27	-0.7
2,812,889	-		GFF2777	0.33	-1.4
2,812,889	-		GFF2777	0.33	+0.5
2,812,894	-		GFF2777	0.33	-2.3
2,812,894	-		GFF2777	0.33	+0.9
2,812,896	+		GFF2777	0.33	-1.5
2,812,900	+		GFF2777	0.34	+0.4
2,812,904	-		GFF2777	0.34	+0.0
2,812,940	+		GFF2777	0.37	-1.6
2,812,940	+		GFF2777	0.37	-0.6
2,812,948	-		GFF2777	0.37	-0.6
2,813,023	-		GFF2777	0.43	+0.5
2,813,037	+		GFF2777	0.44	-1.1
2,813,054	-		GFF2777	0.45	-1.0
2,813,055	-		GFF2777	0.45	-0.5
2,813,070	+		GFF2777	0.46	+0.0
2,813,080	+		GFF2777	0.47	-1.1
2,813,080	+		GFF2777	0.47	+0.7
2,813,087	-		GFF2777	0.47	+0.7
2,813,111	+		GFF2777	0.49	+0.7
2,813,111	+		GFF2777	0.49	+0.3
2,813,111	+		GFF2777	0.49	+0.5
2,813,111	+		GFF2777	0.49	+0.4
2,813,111	+		GFF2777	0.49	+0.6
2,813,119	-		GFF2777	0.50	+0.7
2,813,119	-		GFF2777	0.50	-1.7
2,813,119	-		GFF2777	0.50	-1.8
2,813,119	-		GFF2777	0.50	-0.1
2,813,119	-		GFF2777	0.50	-1.9
2,813,119	-		GFF2777	0.50	+0.8
2,813,119	-		GFF2777	0.50	-2.5
2,813,119	-		GFF2777	0.50	+0.5
2,813,121	+		GFF2777	0.50	-0.3
2,813,129	-		GFF2777	0.50	-1.4
2,813,188	+		GFF2777	0.55	+0.6
2,813,191	-		GFF2777	0.55	-1.1
2,813,193	+		GFF2777	0.55	-0.8
2,813,193	+		GFF2777	0.55	+0.0
2,813,196	-		GFF2777	0.55	-0.7
2,813,210	+		GFF2777	0.56	+0.6
2,813,211	+		GFF2777	0.56	-0.5
2,813,211	+		GFF2777	0.56	-0.4
2,813,218	-		GFF2777	0.57	-1.1
2,813,221	+		GFF2777	0.57	-0.6
2,813,226	+		GFF2777	0.57	+0.2
2,813,226	+		GFF2777	0.57	-1.5
2,813,226	+		GFF2777	0.57	-1.4
2,813,229	-		GFF2777	0.58	+0.0
2,813,236	+		GFF2777	0.58	+1.1
2,813,247	+		GFF2777	0.59	-0.3
2,813,251	+		GFF2777	0.59	+0.2
2,813,252	+		GFF2777	0.59	+1.2
2,813,259	-		GFF2777	0.60	-1.0
2,813,268	+		GFF2777	0.60	-0.2
2,813,338	+		GFF2777	0.65	-1.3
2,813,366	+		GFF2777	0.67	-1.6
2,813,373	+		GFF2777	0.68	-1.8
2,813,373	+		GFF2777	0.68	+1.0
2,813,385	+		GFF2777	0.69	-0.4
2,813,391	-		GFF2777	0.69	+0.3
2,813,452	+		GFF2777	0.74	+0.3
2,813,458	+		GFF2777	0.74	-1.5
2,813,471	-		GFF2777	0.75	+1.1
2,813,486	+		GFF2777	0.76	-0.2
2,813,500	+		GFF2777	0.77	+1.2
2,813,528	+		GFF2777	0.79	+0.2
2,813,536	-		GFF2777	0.80	-1.1
2,813,536	-		GFF2777	0.80	-0.3
2,813,568	+		GFF2777	0.82	-0.9
2,813,576	-		GFF2777	0.83	+0.1
2,813,576	-		GFF2777	0.83	-0.4
2,813,576	-		GFF2777	0.83	-0.6
2,813,576	-		GFF2777	0.83	+0.3
2,813,576	-		GFF2777	0.83	-2.4
2,813,576	-		GFF2777	0.83	+1.7
2,813,592	-		GFF2777	0.84	+0.0
2,813,599	+		GFF2777	0.84	-1.3
2,813,607	-		GFF2777	0.85	+0.5
2,813,607	-		GFF2777	0.85	+1.0
2,813,607	-		GFF2777	0.85	-1.0
2,813,668	-		GFF2777	0.89	-0.3
2,813,714	+				-1.3
2,813,714	+				-0.4
2,813,714	+				-1.0
2,813,722	-				-0.3
2,813,722	-				-2.3
2,813,722	-				-0.3
2,813,722	-				-0.1
2,813,765	-				+0.0
2,813,770	+				-3.4
2,813,778	-				+0.5
2,813,778	-				-0.7
2,813,784	-				-0.1
2,813,791	+				+0.7
2,813,813	+				-1.9
2,813,821	-				+0.4
2,813,822	+				-0.4
2,813,827	+				-0.0
2,813,827	+				-2.1
2,813,827	+				-2.3
2,813,827	+				-0.6
2,813,827	+				-1.2
2,813,830	-				-0.1
2,813,835	-				-1.7
2,813,835	-				-1.8
2,813,835	-				-1.4
2,813,835	-				-0.6
2,813,837	+				+0.8
2,813,848	-				-0.7
2,813,850	+				-0.3
2,813,850	+				-0.3
2,813,860	-				-2.3
2,813,904	-				-1.4
2,813,911	-				+0.5
2,813,911	-				-0.4
2,813,918	+				-1.4
2,813,918	-				+1.4
2,813,920	+				-0.3
2,813,921	+				-0.8
2,813,928	-				+0.8
2,813,936	-				+0.0
2,813,940	+				+0.3
2,813,961	+				-0.6
2,813,969	-				+0.7
2,813,969	-				-1.1
2,813,971	+				+0.3
2,813,979	-				-0.8
2,814,015	+				+1.3
2,814,027	+				-0.8
2,814,060	+		GFF2778	0.13	+0.0
2,814,078	-		GFF2778	0.15	+1.1
2,814,109	+		GFF2778	0.18	-0.5
2,814,109	+		GFF2778	0.18	+1.1
2,814,109	+		GFF2778	0.18	+1.1
2,814,109	+		GFF2778	0.18	-0.1
2,814,109	+		GFF2778	0.18	+0.6
2,814,109	+		GFF2778	0.18	-0.5
2,814,109	+		GFF2778	0.18	+0.7
2,814,110	+		GFF2778	0.18	-0.3
2,814,110	+		GFF2778	0.18	-1.4
2,814,110	+		GFF2778	0.18	+0.8
2,814,110	-		GFF2778	0.18	+1.0
2,814,117	-		GFF2778	0.19	-1.8
2,814,117	-		GFF2778	0.19	-0.6
2,814,117	-		GFF2778	0.19	-0.5
2,814,117	-		GFF2778	0.19	-0.1
2,814,117	-		GFF2778	0.19	-1.2
2,814,117	-		GFF2778	0.19	+0.9
2,814,117	-		GFF2778	0.19	-0.2
2,814,117	-		GFF2778	0.19	+0.9
2,814,117	-		GFF2778	0.19	-1.1
2,814,117	-		GFF2778	0.19	+0.3
2,814,117	-		GFF2778	0.19	-1.4
2,814,117	-		GFF2778	0.19	-0.2
2,814,117	-		GFF2778	0.19	-0.2
2,814,117	-		GFF2778	0.19	-1.4
2,814,117	-		GFF2778	0.19	+0.7
2,814,117	-		GFF2778	0.19	-1.7
2,814,118	-		GFF2778	0.19	-1.2
2,814,131	+		GFF2778	0.20	+0.2
2,814,131	+		GFF2778	0.20	-0.2
2,814,131	+		GFF2778	0.20	-0.1
2,814,155	+		GFF2778	0.23	-0.5
2,814,158	-		GFF2778	0.23	+0.2
2,814,160	+		GFF2778	0.23	-2.6
2,814,163	-		GFF2778	0.24	+0.6
2,814,167	+		GFF2778	0.24	-0.1
2,814,168	-		GFF2778	0.24	-0.5
2,814,168	-		GFF2778	0.24	-1.3
2,814,199	+		GFF2778	0.27	-0.2
2,814,199	+		GFF2778	0.27	-1.5
2,814,206	+		GFF2778	0.28	-2.1
2,814,207	-		GFF2778	0.28	-2.1
2,814,211	+		GFF2778	0.29	-1.3
2,814,211	+		GFF2778	0.29	-1.2
2,814,214	-		GFF2778	0.29	-0.1
2,814,219	-		GFF2778	0.29	-1.1
2,814,229	-		GFF2778	0.31	+0.9
2,814,253	-		GFF2778	0.33	-1.0
2,814,258	-		GFF2778	0.34	-0.7
2,814,289	+		GFF2778	0.37	-0.1
2,814,297	-		GFF2778	0.38	-1.0
2,814,299	+		GFF2778	0.38	-0.9
2,814,302	-		GFF2778	0.38	+1.1
2,814,307	-		GFF2778	0.39	+0.6
2,814,320	+		GFF2778	0.40	-1.3
2,814,322	+		GFF2778	0.40	+0.4
2,814,322	+		GFF2778	0.40	-2.1
2,814,328	-		GFF2778	0.41	-0.4
2,814,356	+		GFF2778	0.44	+0.7
2,814,364	+		GFF2778	0.45	-1.5
2,814,369	+		GFF2778	0.45	-2.5
2,814,369	+		GFF2778	0.45	+0.2
2,814,369	+		GFF2778	0.45	-0.9
2,814,369	+		GFF2778	0.45	+0.8
2,814,369	+		GFF2778	0.45	-1.7
2,814,374	+		GFF2778	0.46	-0.3
2,814,374	+		GFF2778	0.46	-0.2
2,814,377	-		GFF2778	0.46	-0.1
2,814,377	-		GFF2778	0.46	-0.1
2,814,408	+		GFF2778	0.49	-1.5
2,814,411	-		GFF2778	0.49	+0.1
2,814,442	-		GFF2778	0.53	-1.4
2,814,443	-		GFF2778	0.53	+0.4
2,814,453	+		GFF2778	0.54	-1.0
2,814,462	+		GFF2778	0.55	+0.4
2,814,477	-		GFF2778	0.56	-0.3
2,814,484	+		GFF2778	0.57	+0.9
2,814,484	+		GFF2778	0.57	-1.0
2,814,490	-		GFF2778	0.58	-1.1
2,814,490	-		GFF2778	0.58	-0.2
2,814,492	-		GFF2778	0.58	-2.0
2,814,511	+		GFF2778	0.60	-0.2
2,814,513	+		GFF2778	0.60	+1.9
2,814,528	+		GFF2778	0.62	-1.2
2,814,537	-		GFF2778	0.63	-1.8
2,814,547	-		GFF2778	0.64	+0.9
2,814,554	+		GFF2778	0.64	-0.8
2,814,554	+		GFF2778	0.64	-1.2
2,814,554	+		GFF2778	0.64	+1.7
2,814,554	+		GFF2778	0.64	-0.3
2,814,554	+		GFF2778	0.64	+0.6
2,814,554	+		GFF2778	0.64	-0.8
2,814,554	+		GFF2778	0.64	-0.4
2,814,554	+		GFF2778	0.64	+1.1
2,814,562	-		GFF2778	0.65	+0.4
2,814,562	-		GFF2778	0.65	+0.9
2,814,562	-		GFF2778	0.65	+0.4
2,814,562	-		GFF2778	0.65	-0.4
2,814,562	-		GFF2778	0.65	-2.0
2,814,562	-		GFF2778	0.65	-0.3
2,814,562	-		GFF2778	0.65	+1.1
2,814,567	-		GFF2778	0.66	+0.6
2,814,626	+		GFF2778	0.72	-0.1
2,814,634	-		GFF2778	0.73	+0.3
2,814,644	+		GFF2778	0.74	-0.4
2,814,644	+		GFF2778	0.74	-0.5
2,814,652	-		GFF2778	0.74	-0.2
2,814,661	+		GFF2778	0.75	-2.0
2,814,667	+		GFF2778	0.76	-1.3
2,814,667	+		GFF2778	0.76	-1.3
2,814,672	+		GFF2778	0.77	-2.4
2,814,673	-		GFF2778	0.77	+1.0
2,814,675	-		GFF2778	0.77	+0.2
2,814,675	-		GFF2778	0.77	+0.4
2,814,675	-		GFF2778	0.77	+0.3
2,814,681	+		GFF2778	0.77	+0.2
2,814,697	+		GFF2778	0.79	-1.6
2,814,697	+		GFF2778	0.79	+0.2
2,814,697	+		GFF2778	0.79	-1.7
2,814,697	+		GFF2778	0.79	-2.5
2,814,697	+		GFF2778	0.79	-0.8
2,814,697	+		GFF2778	0.79	+0.0
2,814,705	-		GFF2778	0.80	-1.9
2,814,705	-		GFF2778	0.80	+0.7
2,814,705	-		GFF2778	0.80	-0.8
2,814,705	-		GFF2778	0.80	-1.2
2,814,705	-		GFF2778	0.80	-1.2
2,814,705	-		GFF2778	0.80	-1.0
2,814,705	-		GFF2778	0.80	+0.6
2,814,705	-		GFF2778	0.80	-0.5
2,814,725	-		GFF2778	0.82	+0.6
2,814,726	+		GFF2778	0.82	+0.2
2,814,726	+		GFF2778	0.82	-0.4
2,814,726	+		GFF2778	0.82	-0.5
2,814,726	+		GFF2778	0.82	-1.3
2,814,726	+		GFF2778	0.82	+0.3
2,814,729	-		GFF2778	0.82	-0.3
2,814,734	-		GFF2778	0.83	+0.9
2,814,734	-		GFF2778	0.83	-0.5
2,814,734	-		GFF2778	0.83	+0.8
2,814,734	-		GFF2778	0.83	-0.6
2,814,734	-		GFF2778	0.83	-1.4
2,814,734	-		GFF2778	0.83	+0.4
2,814,760	+		GFF2778	0.86	+0.6
2,814,760	+		GFF2778	0.86	+0.3
2,814,767	+		GFF2778	0.86	-1.7
2,814,768	-		GFF2778	0.87	-0.5
2,814,803	+				+0.3
2,814,803	+				-1.3
2,814,803	-				+0.3
2,814,811	-				-1.5