Strain Fitness in Sphingobium sp. HT1-2 around GFF2776

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,809,302	-		GFF2775	0.50	+0.1
2,809,304	+		GFF2775	0.50	+0.9
2,809,304	+		GFF2775	0.50	+0.2
2,809,304	-		GFF2775	0.50	+0.3
2,809,320	+		GFF2775	0.50	-1.2
2,809,325	+		GFF2775	0.51	+1.4
2,809,325	+		GFF2775	0.51	+0.5
2,809,328	-		GFF2775	0.51	+1.0
2,809,328	-		GFF2775	0.51	+0.9
2,809,328	-		GFF2775	0.51	-0.5
2,809,342	+		GFF2775	0.52	-1.4
2,809,349	+		GFF2775	0.52	-0.9
2,809,349	+		GFF2775	0.52	-1.2
2,809,350	-		GFF2775	0.52	-1.5
2,809,350	-		GFF2775	0.52	+0.8
2,809,352	-		GFF2775	0.52	-1.8
2,809,352	-		GFF2775	0.52	-0.1
2,809,357	-		GFF2775	0.52	-0.8
2,809,357	-		GFF2775	0.52	-0.3
2,809,364	-		GFF2775	0.53	-0.1
2,809,385	+		GFF2775	0.54	-0.5
2,809,385	+		GFF2775	0.54	-0.3
2,809,385	+		GFF2775	0.54	-1.2
2,809,385	+		GFF2775	0.54	-1.0
2,809,391	-		GFF2775	0.54	+0.5
2,809,393	-		GFF2775	0.54	+0.4
2,809,416	-		GFF2775	0.55	+0.4
2,809,420	+		GFF2775	0.56	-0.1
2,809,428	-		GFF2775	0.56	-0.4
2,809,428	-		GFF2775	0.56	-0.2
2,809,432	+		GFF2775	0.56	-1.0
2,809,432	+		GFF2775	0.56	+0.8
2,809,432	+		GFF2775	0.56	-1.1
2,809,432	+		GFF2775	0.56	-1.2
2,809,432	+		GFF2775	0.56	+0.4
2,809,434	-		GFF2775	0.56	-1.8
2,809,435	-		GFF2775	0.56	-0.7
2,809,437	+		GFF2775	0.56	+1.7
2,809,437	+		GFF2775	0.56	-0.7
2,809,437	+		GFF2775	0.56	+0.6
2,809,437	+		GFF2775	0.56	-1.7
2,809,440	-		GFF2775	0.57	-1.1
2,809,440	-		GFF2775	0.57	-1.3
2,809,445	-		GFF2775	0.57	+0.2
2,809,445	-		GFF2775	0.57	+0.7
2,809,445	-		GFF2775	0.57	-1.0
2,809,445	-		GFF2775	0.57	+0.5
2,809,445	-		GFF2775	0.57	+1.4
2,809,445	-		GFF2775	0.57	-0.7
2,809,447	+		GFF2775	0.57	-0.9
2,809,455	-		GFF2775	0.57	-1.2
2,809,466	+		GFF2775	0.58	+1.0
2,809,473	+		GFF2775	0.58	-1.5
2,809,473	+		GFF2775	0.58	+0.2
2,809,473	+		GFF2775	0.58	-0.4
2,809,473	+		GFF2775	0.58	-0.3
2,809,473	+		GFF2775	0.58	-0.6
2,809,473	+		GFF2775	0.58	-1.4
2,809,473	+		GFF2775	0.58	-1.4
2,809,473	+		GFF2775	0.58	+0.5
2,809,473	+		GFF2775	0.58	-1.9
2,809,473	+		GFF2775	0.58	-0.7
2,809,473	+		GFF2775	0.58	-0.7
2,809,473	+		GFF2775	0.58	-1.1
2,809,473	+		GFF2775	0.58	-1.0
2,809,473	+		GFF2775	0.58	-0.7
2,809,473	+		GFF2775	0.58	-0.1
2,809,474	-		GFF2775	0.58	-1.7
2,809,474	-		GFF2775	0.58	+1.1
2,809,480	-		GFF2775	0.59	-1.8
2,809,481	-		GFF2775	0.59	-0.1
2,809,481	-		GFF2775	0.59	+0.8
2,809,481	-		GFF2775	0.59	-0.6
2,809,481	-		GFF2775	0.59	+0.3
2,809,481	-		GFF2775	0.59	+0.5
2,809,481	-		GFF2775	0.59	-1.2
2,809,481	-		GFF2775	0.59	-0.9
2,809,481	-		GFF2775	0.59	-0.3
2,809,481	-		GFF2775	0.59	+0.3
2,809,481	-		GFF2775	0.59	+0.3
2,809,481	-		GFF2775	0.59	-1.7
2,809,481	-		GFF2775	0.59	-1.3
2,809,481	-		GFF2775	0.59	-0.2
2,809,492	+		GFF2775	0.59	-1.3
2,809,500	+		GFF2775	0.60	-0.3
2,809,500	-		GFF2775	0.60	+0.3
2,809,505	-		GFF2775	0.60	-0.1
2,809,508	-		GFF2775	0.60	-0.5
2,809,508	-		GFF2775	0.60	-0.2
2,809,508	-		GFF2775	0.60	+0.9
2,809,508	-		GFF2775	0.60	+0.5
2,809,514	-		GFF2775	0.60	-2.1
2,809,527	+		GFF2775	0.61	-1.3
2,809,535	-		GFF2775	0.61	+1.4
2,809,584	-		GFF2775	0.64	+1.0
2,809,589	+		GFF2775	0.64	-1.1
2,809,589	-		GFF2775	0.64	-2.5
2,809,597	-		GFF2775	0.65	+0.1
2,809,633	+		GFF2775	0.66	-0.9
2,809,633	+		GFF2775	0.66	-0.1
2,809,646	+		GFF2775	0.67	-0.7
2,809,651	+		GFF2775	0.67	+1.2
2,809,654	-		GFF2775	0.67	-2.5
2,809,659	-		GFF2775	0.68	-0.2
2,809,726	-		GFF2775	0.71	-0.1
2,809,729	+		GFF2775	0.71	-1.2
2,809,741	+		GFF2775	0.72	-1.7
2,809,775	+		GFF2775	0.74	+0.2
2,809,809	+		GFF2775	0.75	-0.7
2,809,826	+		GFF2775	0.76	-0.9
2,809,838	+		GFF2775	0.77	-0.1
2,809,854	-		GFF2775	0.78	-0.6
2,809,916	+		GFF2775	0.81	+0.3
2,809,916	+		GFF2775	0.81	-1.3
2,809,932	-		GFF2775	0.82	-1.8
2,809,962	-		GFF2775	0.83	-1.5
2,809,962	-		GFF2775	0.83	+0.3
2,809,965	+		GFF2775	0.83	+1.1
2,809,971	-		GFF2775	0.84	-0.3
2,809,971	-		GFF2775	0.84	-0.8
2,809,971	-		GFF2775	0.84	-1.8
2,809,971	-		GFF2775	0.84	+1.5
2,809,971	-		GFF2775	0.84	-0.6
2,809,973	+		GFF2775	0.84	-0.6
2,809,998	-		GFF2775	0.85	+0.5
2,810,011	-		GFF2775	0.86	+1.4
2,810,028	+		GFF2775	0.87	+0.5
2,810,065	+		GFF2775	0.88	-0.4
2,810,073	-		GFF2775	0.89	-0.1
2,810,073	-		GFF2775	0.89	+0.9
2,810,077	-		GFF2775	0.89	+0.4
2,810,082	+		GFF2775	0.89	+0.4
2,810,083	-		GFF2775	0.89	-1.5
2,810,128	-				-0.3
2,810,128	-				-0.1
2,810,135	+				+0.0
2,810,151	-				-0.3
2,810,156	-				-0.3
2,810,156	-				-0.5
2,810,170	+				+0.4
2,810,176	+				-0.5
2,810,207	+				-0.6
2,810,237	-				+0.3
2,810,242	-				+1.5
2,810,243	+				-2.9
2,810,243	+				-2.2
2,810,248	+				-0.3
2,810,251	-				-1.6
2,810,268	+				-2.1
2,810,295	+				-2.9
2,810,332	+				+0.0
2,810,333	+				+0.4
2,810,334	+				-1.8
2,810,334	+				-0.0
2,810,334	+				-0.5
2,810,338	+				-1.5
2,810,339	+				+0.5
2,810,340	-				-0.4
2,810,340	-				+1.1
2,810,342	-				+0.6
2,810,346	-				+1.3
2,810,352	-				-1.3
2,810,353	+				-0.7
2,810,357	-				-2.1
2,810,397	+				-1.3
2,810,420	-				+0.2
2,810,426	-				-0.1
2,810,454	+				+1.7
2,810,456	+				+0.3
2,810,462	-				-2.1
2,810,464	-				+0.2
2,810,469	-				+1.0
2,810,473	+				-0.9
2,810,473	+				+0.2
2,810,480	+				-2.6
2,810,481	-				-0.8
2,810,481	-				-1.1
2,810,486	-				+0.3
2,810,493	+				-0.5
2,810,493	-				+0.1
2,810,493	-				+0.9
2,810,500	-				-1.3
2,810,516	+		GFF2776	0.11	-0.7
2,810,516	+		GFF2776	0.11	-0.4
2,810,516	+		GFF2776	0.11	-2.3
2,810,516	+		GFF2776	0.11	+0.8
2,810,516	+		GFF2776	0.11	+0.6
2,810,516	+		GFF2776	0.11	-0.3
2,810,516	+		GFF2776	0.11	+0.1
2,810,516	+		GFF2776	0.11	+0.1
2,810,521	+		GFF2776	0.11	-1.3
2,810,524	-		GFF2776	0.11	+0.8
2,810,524	-		GFF2776	0.11	-1.3
2,810,524	-		GFF2776	0.11	+0.0
2,810,524	-		GFF2776	0.11	+0.2
2,810,526	+		GFF2776	0.11	+1.4
2,810,546	-		GFF2776	0.12	-0.1
2,810,546	-		GFF2776	0.12	+0.6
2,810,546	-		GFF2776	0.12	-0.1
2,810,552	-		GFF2776	0.12	+0.6
2,810,556	-		GFF2776	0.13	+0.6
2,810,566	-		GFF2776	0.13	-1.5
2,810,566	-		GFF2776	0.13	+0.5
2,810,571	-		GFF2776	0.13	-0.6
2,810,649	+		GFF2776	0.17	-1.4
2,810,655	+		GFF2776	0.17	-0.8
2,810,704	+		GFF2776	0.20	+0.9
2,810,717	-		GFF2776	0.20	-0.3
2,810,717	-		GFF2776	0.20	+1.0
2,810,751	+		GFF2776	0.22	-1.3
2,810,773	-		GFF2776	0.23	-1.7
2,810,776	-		GFF2776	0.23	-0.9
2,810,801	+		GFF2776	0.25	+1.3
2,810,803	+		GFF2776	0.25	-0.4
2,810,809	+		GFF2776	0.25	+0.1
2,810,816	+		GFF2776	0.25	+0.9
2,810,821	+		GFF2776	0.26	-1.3
2,810,821	+		GFF2776	0.26	+0.3
2,810,839	-		GFF2776	0.26	-0.3
2,810,842	+		GFF2776	0.27	-0.8
2,810,847	+		GFF2776	0.27	-0.5
2,810,847	+		GFF2776	0.27	+0.6
2,810,859	+		GFF2776	0.27	+0.6
2,810,860	+		GFF2776	0.28	+0.8
2,810,867	-		GFF2776	0.28	-0.2
2,810,867	-		GFF2776	0.28	-0.3
2,810,867	-		GFF2776	0.28	+0.0
2,810,868	-		GFF2776	0.28	-0.1
2,810,875	-		GFF2776	0.28	-0.5
2,810,875	-		GFF2776	0.28	+0.5
2,810,883	+		GFF2776	0.29	+0.1
2,810,884	+		GFF2776	0.29	+1.5
2,810,884	+		GFF2776	0.29	-0.5
2,810,890	-		GFF2776	0.29	-1.0
2,810,892	-		GFF2776	0.29	-0.4
2,810,904	+		GFF2776	0.30	+1.0
2,810,907	-		GFF2776	0.30	-2.3
2,810,909	-		GFF2776	0.30	-1.0
2,810,930	+		GFF2776	0.31	-0.1
2,810,930	+		GFF2776	0.31	+0.7
2,810,956	-		GFF2776	0.32	-0.0
2,810,966	-		GFF2776	0.33	+0.4
2,810,976	-		GFF2776	0.33	+0.2
2,810,981	-		GFF2776	0.33	-0.6
2,810,996	-		GFF2776	0.34	+0.5
2,811,032	+		GFF2776	0.36	+1.3
2,811,037	+		GFF2776	0.36	-0.8
2,811,037	+		GFF2776	0.36	+1.0
2,811,037	+		GFF2776	0.36	-0.7
2,811,062	+		GFF2776	0.37	-0.9
2,811,062	+		GFF2776	0.37	-0.2
2,811,064	-		GFF2776	0.38	-1.6
2,811,075	+		GFF2776	0.38	+0.4
2,811,075	-		GFF2776	0.38	+0.3
2,811,083	-		GFF2776	0.39	-1.2
2,811,215	-		GFF2776	0.45	-1.3
2,811,270	+		GFF2776	0.48	-2.1
2,811,370	+		GFF2776	0.53	-1.2
2,811,380	+		GFF2776	0.53	+0.2
2,811,380	+		GFF2776	0.53	+0.0
2,811,380	+		GFF2776	0.53	+0.1
2,811,388	-		GFF2776	0.54	-0.3
2,811,388	-		GFF2776	0.54	+0.9
2,811,388	-		GFF2776	0.54	-0.2
2,811,388	-		GFF2776	0.54	-1.9
2,811,388	-		GFF2776	0.54	+0.9
2,811,388	-		GFF2776	0.54	-0.3
2,811,390	+		GFF2776	0.54	+0.6
2,811,398	-		GFF2776	0.54	-0.7
2,811,411	-		GFF2776	0.55	-1.0
2,811,447	+		GFF2776	0.56	-1.9
2,811,447	+		GFF2776	0.56	-0.7
2,811,447	+		GFF2776	0.56	+0.7
2,811,517	-		GFF2776	0.60	+0.1
2,811,547	-		GFF2776	0.61	-1.4
2,811,564	+		GFF2776	0.62	+0.5
2,811,630	-		GFF2776	0.65	+0.6
2,811,640	+		GFF2776	0.66	+0.5
2,811,645	-		GFF2776	0.66	+1.4
2,811,654	+		GFF2776	0.67	+0.9
2,811,660	-		GFF2776	0.67	+1.8
2,811,683	-		GFF2776	0.68	+0.2
2,811,706	-		GFF2776	0.69	+0.6
2,811,709	+		GFF2776	0.69	+0.4
2,811,716	-		GFF2776	0.70	+0.4
2,811,732	+		GFF2776	0.71	+0.3
2,811,738	-		GFF2776	0.71	-0.5
2,811,742	+		GFF2776	0.71	+0.4
2,811,745	-		GFF2776	0.71	+0.1
2,811,750	-		GFF2776	0.71	-0.5
2,811,750	-		GFF2776	0.71	-1.3
2,811,750	-		GFF2776	0.71	+0.9
2,811,750	-		GFF2776	0.71	+0.6
2,811,750	-		GFF2776	0.71	-0.1
2,811,755	-		GFF2776	0.72	-0.1
2,811,761	-		GFF2776	0.72	+1.4
2,811,771	+		GFF2776	0.72	+0.8
2,811,836	+		GFF2776	0.76	-1.6
2,811,836	+		GFF2776	0.76	-1.2
2,811,836	+		GFF2776	0.76	+1.2
2,811,836	+		GFF2776	0.76	-0.2
2,811,836	+		GFF2776	0.76	+1.6
2,811,841	+		GFF2776	0.76	+1.0
2,811,846	+		GFF2776	0.76	+0.1
2,811,905	+		GFF2776	0.79	+0.0
2,811,913	-		GFF2776	0.79	-1.1
2,811,913	-		GFF2776	0.79	-0.6
2,811,913	-		GFF2776	0.79	-1.8
2,811,923	-		GFF2776	0.80	-0.7
2,811,983	+		GFF2776	0.83	-0.1
2,811,983	+		GFF2776	0.83	+0.2
2,811,983	+		GFF2776	0.83	-0.3
2,811,993	+		GFF2776	0.83	-0.4
2,811,993	+		GFF2776	0.83	+0.2
2,811,993	+		GFF2776	0.83	-2.1
2,811,993	+		GFF2776	0.83	-0.1
2,811,993	+		GFF2776	0.83	-0.5
2,811,996	+		GFF2776	0.84	+0.7
2,811,996	+		GFF2776	0.84	+0.5
2,812,011	+		GFF2776	0.84	-0.8
2,812,016	+		GFF2776	0.85	+0.7
2,812,016	+		GFF2776	0.85	+1.0
2,812,024	-		GFF2776	0.85	-0.6
2,812,024	-		GFF2776	0.85	-1.3
2,812,024	-		GFF2776	0.85	-0.5
2,812,064	-		GFF2776	0.87	+0.4
2,812,111	-		GFF2776	0.89	-0.4
2,812,118	+		GFF2776	0.90	+0.0
2,812,120	+		GFF2776	0.90	+1.1
2,812,144	-				+0.0
2,812,150	-				+0.8
2,812,151	-				-0.3
2,812,152	-				+1.1
2,812,174	+				-0.3
2,812,175	-				-0.5
2,812,187	-				+1.4
2,812,200	+				-1.2
2,812,201	+				+0.7
2,812,237	+				-0.3
2,812,243	+				+0.4
2,812,256	-				-0.7
2,812,264	-				+0.4
2,812,273	-				+0.2
2,812,293	-				-1.3
2,812,299	+				-0.9
2,812,314	+				+0.0
2,812,314	+				+0.1
2,812,314	+				+1.2
2,812,322	-				-0.5
2,812,322	-				+1.4
2,812,327	+				-0.5
2,812,327	+				+0.2
2,812,327	+				-0.3
2,812,335	-				-0.2
2,812,335	-				-2.0
2,812,340	-				-0.8
2,812,358	-				-0.3
2,812,380	-				+0.3
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