Strain Fitness in Sphingobium sp. HT1-2 around GFF2768

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,799,873	-				+0.8
2,799,928	+				-1.4
2,799,957	+				-0.7
2,799,963	+				+0.1
2,799,966	-				-1.4
2,799,978	+				+0.6
2,800,014	+				+0.2
2,800,017	-				-0.4
2,800,024	+				-1.3
2,800,024	-				-1.8
2,800,032	-				+0.4
2,800,050	+				-1.4
2,800,050	+				-2.0
2,800,050	+				+0.2
2,800,058	-				-0.2
2,800,062	+				-0.6
2,800,062	+				+0.1
2,800,069	+				-0.2
2,800,070	-				-0.8
2,800,076	+				-0.2
2,800,077	-				-0.7
2,800,090	+				-0.8
2,800,101	-				+0.6
2,800,132	+				+1.6
2,800,134	+				-0.6
2,800,142	-				+0.2
2,800,150	-				+0.1
2,800,162	+				-0.1
2,800,170	-				-2.1
2,800,170	-				+1.1
2,800,170	-				-1.1
2,800,176	+				+0.9
2,800,179	-				-0.3
2,800,184	+				+0.4
2,800,192	-		GFF2767	0.11	-0.4
2,800,192	-		GFF2767	0.11	+0.3
2,800,194	+		GFF2767	0.11	-0.5
2,800,194	+		GFF2767	0.11	+0.2
2,800,199	+		GFF2767	0.12	+0.7
2,800,202	-		GFF2767	0.12	+0.5
2,800,202	-		GFF2767	0.12	-0.0
2,800,202	-		GFF2767	0.12	-2.1
2,800,221	+		GFF2767	0.15	+0.5
2,800,228	+		GFF2767	0.16	-1.2
2,800,228	+		GFF2767	0.16	-1.0
2,800,228	+		GFF2767	0.16	-1.0
2,800,228	+		GFF2767	0.16	-0.1
2,800,228	+		GFF2767	0.16	-0.7
2,800,233	+		GFF2767	0.17	-0.5
2,800,236	-		GFF2767	0.17	+0.3
2,800,236	-		GFF2767	0.17	+1.5
2,800,236	-		GFF2767	0.17	-0.3
2,800,236	-		GFF2767	0.17	+2.0
2,800,241	-		GFF2767	0.18	-0.8
2,800,261	+		GFF2767	0.21	+1.5
2,800,262	+		GFF2767	0.21	-0.4
2,800,302	+		GFF2767	0.28	-0.3
2,800,310	+		GFF2767	0.29	-0.8
2,800,315	+		GFF2767	0.30	+1.1
2,800,333	-		GFF2767	0.32	-0.9
2,800,333	-		GFF2767	0.32	+0.2
2,800,342	-		GFF2767	0.34	+1.3
2,800,375	+		GFF2767	0.39	+0.7
2,800,383	-		GFF2767	0.40	+0.6
2,800,408	-		GFF2767	0.44	-2.3
2,800,416	+		GFF2767	0.45	-0.6
2,800,417	-		GFF2767	0.45	-1.8
2,800,417	-		GFF2767	0.45	-1.5
2,800,442	-		GFF2767	0.49	-1.3
2,800,442	-		GFF2767	0.49	+0.0
2,800,460	-		GFF2767	0.52	-2.9
2,800,515	+		GFF2767	0.60	+1.4
2,800,520	+		GFF2767	0.61	+1.2
2,800,525	+		GFF2767	0.62	+0.7
2,800,533	+		GFF2767	0.63	-0.1
2,800,542	-		GFF2767	0.64	-1.2
2,800,542	-		GFF2767	0.64	-2.1
2,800,565	+		GFF2767	0.68	-0.3
2,800,565	+		GFF2767	0.68	+0.1
2,800,565	+		GFF2767	0.68	+0.6
2,800,565	+		GFF2767	0.68	-0.8
2,800,570	+		GFF2767	0.69	-0.2
2,800,573	-		GFF2767	0.69	-0.5
2,800,573	-		GFF2767	0.69	-0.3
2,800,573	-		GFF2767	0.69	+0.2
2,800,573	-		GFF2767	0.69	-1.5
2,800,595	+		GFF2767	0.72	-0.9
2,800,600	+		GFF2767	0.73	+0.4
2,800,601	-		GFF2767	0.73	-2.3
2,800,601	-		GFF2767	0.73	-0.6
2,800,601	-		GFF2767	0.73	-1.3
2,800,603	-		GFF2767	0.74	-0.8
2,800,608	+		GFF2767	0.74	-0.6
2,800,610	+		GFF2767	0.75	+0.4
2,800,613	-		GFF2767	0.75	+0.8
2,800,616	-		GFF2767	0.76	-1.5
2,800,618	-		GFF2767	0.76	-1.7
2,800,638	+		GFF2767	0.79	+0.7
2,800,641	-		GFF2767	0.79	-0.5
2,800,656	+		GFF2767	0.82	+0.1
2,800,661	+		GFF2767	0.82	-0.1
2,800,695	-		GFF2767	0.88	+0.9
2,800,699	+		GFF2767	0.88	-0.6
2,800,721	+				+0.5
2,800,735	-				-0.3
2,800,752	-				+0.6
2,800,752	-				+0.6
2,800,752	-				-1.2
2,800,754	+				-0.6
2,800,754	+				+0.3
2,800,754	+				-0.3
2,800,760	-				-2.1
2,800,762	-				-1.7
2,800,765	-				-0.7
2,800,765	-				-2.3
2,800,767	-				+0.3
2,800,770	+				-0.2
2,800,778	-				-2.0
2,800,778	-				+0.4
2,800,789	-				-0.1
2,800,798	+				+0.6
2,800,798	+				+0.4
2,800,798	+				-0.8
2,800,798	+				-0.9
2,800,806	-				-0.2
2,800,811	-				-1.4
2,800,828	+				-1.3
2,800,828	+				+0.9
2,800,838	+				-1.7
2,800,858	+				+0.2
2,800,860	+				+0.3
2,800,860	+				-1.1
2,800,860	+				-1.0
2,800,860	+				+1.1
2,800,860	+				+0.1
2,800,860	+				-0.5
2,800,860	+				-0.5
2,800,860	+				-2.2
2,800,861	-				-0.2
2,800,868	-				+0.4
2,800,868	-				+0.0
2,800,868	-				-1.2
2,800,875	+				-1.0
2,800,875	+				+0.6
2,800,875	+				-0.6
2,800,881	+				-0.4
2,800,883	-				-1.3
2,800,888	-				-0.1
2,800,888	-				-0.4
2,800,894	-				-1.7
2,800,953	+				-1.2
2,800,959	-				-0.7
2,800,960	-				+0.4
2,800,961	-				-2.3
2,800,961	-				-0.0
2,800,980	+		GFF2768	0.11	-1.3
2,800,980	+		GFF2768	0.11	-1.1
2,800,980	+		GFF2768	0.11	+0.5
2,800,980	+		GFF2768	0.11	+1.3
2,800,980	+		GFF2768	0.11	-0.9
2,800,988	-		GFF2768	0.12	+0.5
2,800,988	-		GFF2768	0.12	-1.5
2,800,988	-		GFF2768	0.12	-0.7
2,800,988	-		GFF2768	0.12	-2.1
2,800,988	-		GFF2768	0.12	-0.1
2,800,988	-		GFF2768	0.12	-0.5
2,800,988	-		GFF2768	0.12	-0.6
2,800,989	+		GFF2768	0.12	-0.4
2,801,013	+		GFF2768	0.14	-2.4
2,801,013	+		GFF2768	0.14	-1.6
2,801,013	+		GFF2768	0.14	+0.2
2,801,021	-		GFF2768	0.14	-1.1
2,801,021	-		GFF2768	0.14	-1.3
2,801,021	-		GFF2768	0.14	-0.3
2,801,026	-		GFF2768	0.15	-0.3
2,801,026	-		GFF2768	0.15	-0.4
2,801,031	-		GFF2768	0.15	-1.3
2,801,031	-		GFF2768	0.15	-0.2
2,801,045	+		GFF2768	0.16	-1.3
2,801,053	-		GFF2768	0.17	-1.5
2,801,069	+		GFF2768	0.19	-1.4
2,801,123	-		GFF2768	0.23	-0.5
2,801,123	-		GFF2768	0.23	-0.7
2,801,176	+		GFF2768	0.28	-0.3
2,801,176	+		GFF2768	0.28	+0.2
2,801,184	-		GFF2768	0.28	+0.3
2,801,194	-		GFF2768	0.29	-0.1
2,801,198	+		GFF2768	0.29	+0.7
2,801,198	+		GFF2768	0.29	+0.1
2,801,198	+		GFF2768	0.29	-1.4
2,801,206	-		GFF2768	0.30	-1.3
2,801,206	-		GFF2768	0.30	-0.9
2,801,206	-		GFF2768	0.30	-1.1
2,801,206	-		GFF2768	0.30	+0.3
2,801,206	-		GFF2768	0.30	+1.0
2,801,206	-		GFF2768	0.30	-0.4
2,801,263	-		GFF2768	0.35	-0.2
2,801,278	+		GFF2768	0.36	-1.5
2,801,288	-		GFF2768	0.37	-1.8
2,801,290	+		GFF2768	0.37	+0.7
2,801,303	-		GFF2768	0.38	+1.2
2,801,311	-		GFF2768	0.39	-1.3
2,801,322	+		GFF2768	0.40	+0.3
2,801,334	+		GFF2768	0.41	-0.5
2,801,347	-		GFF2768	0.42	+1.0
2,801,350	+		GFF2768	0.42	-0.8
2,801,350	+		GFF2768	0.42	+0.6
2,801,355	+		GFF2768	0.43	-0.5
2,801,368	-		GFF2768	0.44	-0.6
2,801,375	+		GFF2768	0.44	-2.1
2,801,375	+		GFF2768	0.44	+0.3
2,801,378	-		GFF2768	0.45	-0.1
2,801,383	-		GFF2768	0.45	+0.3
2,801,385	+		GFF2768	0.45	-1.6
2,801,393	-		GFF2768	0.46	-2.0
2,801,414	+		GFF2768	0.48	+0.7
2,801,417	+		GFF2768	0.48	-1.2
2,801,417	+		GFF2768	0.48	+0.4
2,801,417	+		GFF2768	0.48	-1.5
2,801,422	+		GFF2768	0.48	+0.5
2,801,425	-		GFF2768	0.49	+1.5
2,801,428	-		GFF2768	0.49	+1.0
2,801,450	+		GFF2768	0.51	-1.6
2,801,458	-		GFF2768	0.51	-0.4
2,801,475	+		GFF2768	0.53	+0.2
2,801,475	+		GFF2768	0.53	+0.7
2,801,480	+		GFF2768	0.53	-0.1
2,801,480	+		GFF2768	0.53	-1.1
2,801,483	-		GFF2768	0.54	-0.6
2,801,483	-		GFF2768	0.54	+0.3
2,801,483	-		GFF2768	0.54	-2.4
2,801,485	+		GFF2768	0.54	-0.1
2,801,485	+		GFF2768	0.54	-0.7
2,801,488	-		GFF2768	0.54	-0.6
2,801,488	-		GFF2768	0.54	+0.9
2,801,505	+		GFF2768	0.55	+0.8
2,801,552	+		GFF2768	0.59	+0.7
2,801,552	+		GFF2768	0.59	-0.5
2,801,552	+		GFF2768	0.59	+0.0
2,801,562	-		GFF2768	0.60	-1.6
2,801,579	-		GFF2768	0.62	-0.6
2,801,587	-		GFF2768	0.62	-0.8
2,801,604	-		GFF2768	0.64	-1.4
2,801,612	-		GFF2768	0.64	+0.4
2,801,616	-		GFF2768	0.65	+0.0
2,801,625	+		GFF2768	0.66	+0.0
2,801,625	+		GFF2768	0.66	-0.2
2,801,626	-		GFF2768	0.66	+0.0
2,801,660	+		GFF2768	0.69	-0.1
2,801,665	+		GFF2768	0.69	+0.3
2,801,665	+		GFF2768	0.69	+0.1
2,801,668	-		GFF2768	0.69	+0.8
2,801,673	-		GFF2768	0.70	-0.6
2,801,681	-		GFF2768	0.70	+0.9
2,801,686	+		GFF2768	0.71	-0.2
2,801,690	+		GFF2768	0.71	+0.1
2,801,701	+		GFF2768	0.72	-1.9
2,801,701	+		GFF2768	0.72	-0.5
2,801,720	+		GFF2768	0.74	-0.2
2,801,720	+		GFF2768	0.74	-0.1
2,801,723	+		GFF2768	0.74	-0.1
2,801,723	-		GFF2768	0.74	-0.5
2,801,741	+		GFF2768	0.75	-1.3
2,801,746	+		GFF2768	0.76	-0.1
2,801,746	+		GFF2768	0.76	+1.3
2,801,746	+		GFF2768	0.76	-0.3
2,801,746	+		GFF2768	0.76	-0.4
2,801,754	-		GFF2768	0.76	-2.9
2,801,754	-		GFF2768	0.76	-0.5
2,801,754	-		GFF2768	0.76	-0.3
2,801,798	+		GFF2768	0.80	-2.0
2,801,799	-		GFF2768	0.80	+0.3
2,801,804	-		GFF2768	0.81	+0.5
2,801,816	+		GFF2768	0.82	-1.8
2,801,821	+		GFF2768	0.82	-1.4
2,801,824	-		GFF2768	0.82	+0.4
2,801,824	-		GFF2768	0.82	-0.2
2,801,824	-		GFF2768	0.82	+0.1
2,801,843	+		GFF2768	0.84	+0.4
2,801,850	+		GFF2768	0.85	-0.7
2,801,850	+		GFF2768	0.85	-1.2
2,801,850	+		GFF2768	0.85	-2.3
2,801,852	-		GFF2768	0.85	+0.6
2,801,854	+		GFF2768	0.85	+0.9
2,801,858	-		GFF2768	0.85	+0.7
2,801,892	+		GFF2768	0.88	-0.7
2,801,892	+		GFF2768	0.88	+0.6
2,801,893	-		GFF2768	0.88	+0.5
2,801,907	+		GFF2768	0.89	-0.7
2,801,912	+		GFF2768	0.90	-0.9
2,801,925	-				-0.4
2,801,962	+				-0.9
2,801,962	+				-0.6
2,801,962	+				-0.1
2,801,962	+				-0.4
2,801,962	+				+0.4
2,801,970	-				+0.0
2,801,970	-				-0.1
2,801,970	-				-0.5
2,801,970	-				+0.3
2,801,970	-				+0.8
2,801,976	+				-1.4
2,801,985	+				-1.6
2,801,990	+				+0.2
2,801,993	-				+0.3
2,801,993	-				-1.5
2,801,995	+				-1.3
2,802,001	+				+0.4
2,802,004	+				-2.1
2,802,009	-				-2.2
2,802,031	+				+0.4
2,802,067	+				-0.7
2,802,067	+				+0.9
2,802,076	-				+0.6
2,802,094	+				+0.3
2,802,096	+				-0.9
2,802,102	+				-0.6
2,802,127	+				-2.3
2,802,140	-				-2.3
2,802,145	-				+0.3
2,802,155	+				+0.3
2,802,155	+				+0.8
2,802,163	-				+0.2
2,802,163	-				+0.6
2,802,163	-				-1.3
2,802,163	-				-0.2
2,802,163	-				-2.1
2,802,163	-				+0.3
2,802,163	-				-1.8
2,802,165	+				+0.5
2,802,178	-				-0.6
2,802,222	+				-0.4
2,802,222	+				-1.1
2,802,222	+				-0.9
2,802,222	+				+0.5
2,802,228	-				-0.2
2,802,229	-				+0.0
2,802,230	-				+0.5
2,802,230	-				-0.5
2,802,230	-				-1.0
2,802,232	+				-2.0
2,802,232	+				+0.8
2,802,240	-				+0.4
2,802,240	-				-0.2
2,802,240	-				-1.3
2,802,240	-				-0.7
2,802,268	+				+0.5
2,802,268	+				-1.5
2,802,276	-				-2.0
2,802,294	+		GFF2769	0.10	-1.7
2,802,309	+		GFF2769	0.11	-0.5
2,802,317	+		GFF2769	0.12	-1.3
2,802,319	+		GFF2769	0.12	-0.1
2,802,355	+		GFF2769	0.15	+1.4
2,802,400	+		GFF2769	0.19	-1.4
2,802,406	-		GFF2769	0.20	+0.6
2,802,410	+		GFF2769	0.20	-0.5
2,802,441	-		GFF2769	0.22	-1.6
2,802,492	-		GFF2769	0.27	+0.3
2,802,492	-		GFF2769	0.27	-1.1
2,802,506	+		GFF2769	0.28	+0.2
2,802,506	+		GFF2769	0.28	-0.5
2,802,506	+		GFF2769	0.28	-1.0
2,802,510	+		GFF2769	0.28	-2.3
2,802,511	+		GFF2769	0.28	-0.7
2,802,514	-		GFF2769	0.29	+0.5
2,802,514	-		GFF2769	0.29	-0.6
2,802,519	-		GFF2769	0.29	-0.7
2,802,540	+		GFF2769	0.31	-2.2
2,802,540	+		GFF2769	0.31	-1.0
2,802,548	-		GFF2769	0.32	-0.2
2,802,548	-		GFF2769	0.32	-0.5
2,802,578	+		GFF2769	0.34	+0.4
2,802,581	-		GFF2769	0.34	+0.1
2,802,581	-		GFF2769	0.34	+0.0
2,802,622	+		GFF2769	0.38	+1.2
2,802,630	-		GFF2769	0.39	-1.0
2,802,632	+		GFF2769	0.39	+0.1
2,802,664	+		GFF2769	0.41	-1.8
2,802,680	-		GFF2769	0.43	+0.2
2,802,688	+		GFF2769	0.43	+0.6
2,802,696	-		GFF2769	0.44	-1.7
2,802,713	+		GFF2769	0.46	-1.9
2,802,713	+		GFF2769	0.46	-0.4
2,802,713	+		GFF2769	0.46	-0.7
2,802,715	-		GFF2769	0.46	-1.9
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