Strain Fitness in Sphingobium sp. HT1-2 around GFF2693

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,714,178	-		GFF2691	0.62	-0.2
2,714,195	+		GFF2691	0.64	-0.1
2,714,203	-		GFF2691	0.64	+0.5
2,714,221	+		GFF2691	0.66	+0.5
2,714,227	+		GFF2691	0.66	+1.1
2,714,227	+		GFF2691	0.66	-0.4
2,714,227	+		GFF2691	0.66	-1.7
2,714,243	+		GFF2691	0.67	-1.3
2,714,249	+		GFF2691	0.68	-0.5
2,714,251	+		GFF2691	0.68	-0.8
2,714,251	+		GFF2691	0.68	+0.8
2,714,251	+		GFF2691	0.68	-1.3
2,714,251	+		GFF2691	0.68	+1.3
2,714,259	-		GFF2691	0.69	+0.3
2,714,264	-		GFF2691	0.69	-1.1
2,714,280	+		GFF2691	0.70	-1.4
2,714,280	+		GFF2691	0.70	+0.3
2,714,280	+		GFF2691	0.70	+0.6
2,714,280	+		GFF2691	0.70	-0.5
2,714,280	+		GFF2691	0.70	+0.2
2,714,280	+		GFF2691	0.70	+0.7
2,714,280	+		GFF2691	0.70	-0.0
2,714,288	-		GFF2691	0.71	+1.2
2,714,288	-		GFF2691	0.71	+0.1
2,714,288	-		GFF2691	0.71	-1.6
2,714,288	-		GFF2691	0.71	+0.6
2,714,288	-		GFF2691	0.71	-1.6
2,714,290	-		GFF2691	0.71	-1.4
2,714,290	-		GFF2691	0.71	+0.8
2,714,292	+		GFF2691	0.71	+0.6
2,714,292	+		GFF2691	0.71	+0.6
2,714,297	+		GFF2691	0.72	+0.0
2,714,297	+		GFF2691	0.72	-2.7
2,714,297	+		GFF2691	0.72	-0.9
2,714,300	-		GFF2691	0.72	-1.2
2,714,311	+		GFF2691	0.73	-0.2
2,714,342	+		GFF2691	0.75	+1.3
2,714,350	-		GFF2691	0.76	+0.4
2,714,354	+		GFF2691	0.76	+0.4
2,714,362	-		GFF2691	0.77	+0.5
2,714,362	-		GFF2691	0.77	-1.3
2,714,362	-		GFF2691	0.77	-0.5
2,714,362	-		GFF2691	0.77	-0.5
2,714,391	+		GFF2691	0.79	-0.3
2,714,407	-		GFF2691	0.80	-0.0
2,714,448	-		GFF2691	0.83	+0.6
2,714,449	-		GFF2691	0.84	+1.0
2,714,452	+		GFF2691	0.84	-0.0
2,714,454	-		GFF2691	0.84	-0.2
2,714,455	+		GFF2691	0.84	-1.0
2,714,457	+		GFF2691	0.84	+0.4
2,714,512	-		GFF2691	0.88	+0.4
2,714,521	+		GFF2691	0.89	-2.1
2,714,524	-		GFF2691	0.89	-1.1
2,714,577	-				+0.3
2,714,588	+				-1.7
2,714,588	+				+0.8
2,714,588	+				+0.0
2,714,588	+				+0.2
2,714,588	+				-1.1
2,714,588	+				-0.5
2,714,596	-				-0.8
2,714,596	-				-0.2
2,714,596	-				-0.4
2,714,596	-				+0.2
2,714,596	-				+0.8
2,714,596	-				+0.3
2,714,606	-				-0.6
2,714,619	-				+1.4
2,714,621	+				-0.2
2,714,649	+				+0.6
2,714,649	+				+0.1
2,714,649	+				+1.3
2,714,657	-				-0.8
2,714,657	-				+0.1
2,714,659	+				-0.2
2,714,659	+				-0.4
2,714,659	+				+0.7
2,714,667	-				+0.1
2,714,667	-				-0.2
2,714,667	-				+0.6
2,714,667	-				-1.0
2,714,667	-				-0.2
2,714,699	-				+0.7
2,714,701	-				-0.8
2,714,701	-				+0.4
2,714,701	-				-0.6
2,714,711	+				-0.3
2,714,711	+				+0.1
2,714,716	+				-1.0
2,714,718	-				-0.2
2,714,718	-				-0.5
2,714,719	-				+0.3
2,714,724	-				-2.1
2,714,724	-				-1.9
2,714,726	+				+0.4
2,714,726	+				-1.0
2,714,726	+				+0.2
2,714,726	+				+0.5
2,714,726	-				-1.2
2,714,726	-				+0.5
2,714,728	+				-0.3
2,714,733	+				+0.4
2,714,734	+				+0.7
2,714,734	-				-2.6
2,714,734	-				-0.2
2,714,736	-				+0.9
2,714,740	+				+0.6
2,714,740	+				-0.7
2,714,741	-				-0.6
2,714,748	-				+0.6
2,714,749	+				+0.2
2,714,750	+				+0.6
2,714,763	-				-0.6
2,714,768	+				-0.2
2,714,768	+				-1.1
2,714,768	+				+0.6
2,714,773	+				-0.3
2,714,776	-				+2.0
2,714,776	-				+0.3
2,714,776	-				-1.6
2,714,778	+				-0.7
2,714,778	-				+1.0
2,714,794	+				-0.2
2,714,814	+				-0.2
2,714,837	+				+0.0
2,714,859	+				+0.1
2,714,859	+				-1.8
2,714,867	-		GFF2692	0.14	-1.7
2,714,867	-		GFF2692	0.14	+0.9
2,714,867	-		GFF2692	0.14	+0.2
2,714,867	-		GFF2692	0.14	+0.9
2,714,867	-		GFF2692	0.14	-0.6
2,714,869	+		GFF2692	0.16	+0.7
2,714,875	-		GFF2692	0.20	-0.1
2,714,893	-		GFF2692	0.34	-1.8
2,714,894	-		GFF2692	0.35	-0.5
2,714,894	-		GFF2692	0.35	+1.5
2,714,897	+		GFF2692	0.37	-2.2
2,714,899	-		GFF2692	0.39	+0.3
2,714,899	-		GFF2692	0.39	+0.7
2,714,899	-		GFF2692	0.39	+0.8
2,714,947	-		GFF2692	0.75	+0.6
2,714,961	-		GFF2692	0.86	+0.1
2,714,961	-		GFF2692	0.86	-0.8
2,714,976	-				+0.9
2,714,976	-				-1.1
2,714,983	-				+0.3
2,714,983	-				+0.2
2,714,988	+				-2.6
2,714,989	-				-0.3
2,714,993	+				+0.8
2,714,993	+				+1.4
2,714,993	+				-2.2
2,714,995	+				-0.3
2,715,001	-				-0.1
2,715,003	+				+0.5
2,715,003	+				+1.0
2,715,003	+				-1.0
2,715,011	-				+0.1
2,715,011	-				+0.2
2,715,011	-				-2.5
2,715,011	-				+1.0
2,715,011	-				+0.5
2,715,011	-				-0.5
2,715,011	-				-1.2
2,715,011	-				+0.4
2,715,012	-				+0.1
2,715,012	-				-0.5
2,715,013	-				-1.7
2,715,013	-				-1.2
2,715,016	-				-0.9
2,715,026	-				+0.9
2,715,036	+				-0.1
2,715,044	-				+0.4
2,715,044	-				-1.5
2,715,044	-				-0.9
2,715,055	+				+1.1
2,715,064	-				+0.9
2,715,066	-				+0.8
2,715,076	-				-1.6
2,715,078	+				-0.1
2,715,086	-				+2.0
2,715,086	-				+1.1
2,715,088	+				+0.0
2,715,088	+				+0.5
2,715,088	+				-1.3
2,715,088	+				+0.2
2,715,089	-				-1.1
2,715,096	-				-1.7
2,715,115	+				-0.2
2,715,117	-				-0.1
2,715,141	-				-0.8
2,715,161	+				+0.1
2,715,167	+				-1.3
2,715,169	-				-0.3
2,715,172	+				+0.4
2,715,180	-				+0.6
2,715,180	-				-0.6
2,715,190	-				+1.1
2,715,204	+				-1.7
2,715,204	+				+0.7
2,715,204	+				-1.9
2,715,204	+				-0.7
2,715,204	+				-0.9
2,715,204	+				+1.0
2,715,209	+				-1.6
2,715,212	-				-0.3
2,715,212	-				+0.8
2,715,217	-				-0.0
2,715,221	+				-1.2
2,715,231	+				-1.9
2,715,234	-				+0.5
2,715,239	+				+0.3
2,715,247	-				+0.1
2,715,248	-				-1.4
2,715,253	+				+1.1
2,715,256	-				+0.7
2,715,270	+				+0.7
2,715,272	-				-1.2
2,715,350	-		GFF2693	0.14	+1.9
2,715,360	+		GFF2693	0.15	-1.9
2,715,429	+		GFF2693	0.20	-1.0
2,715,429	+		GFF2693	0.20	-2.4
2,715,429	+		GFF2693	0.20	+1.1
2,715,455	+		GFF2693	0.22	-0.6
2,715,467	-		GFF2693	0.23	-0.2
2,715,483	+		GFF2693	0.24	-0.8
2,715,506	+		GFF2693	0.26	-0.2
2,715,506	+		GFF2693	0.26	+0.6
2,715,506	+		GFF2693	0.26	-0.4
2,715,506	+		GFF2693	0.26	+1.0
2,715,506	+		GFF2693	0.26	+1.2
2,715,506	+		GFF2693	0.26	-0.5
2,715,506	+		GFF2693	0.26	+0.7
2,715,506	+		GFF2693	0.26	-0.6
2,715,506	+		GFF2693	0.26	-0.2
2,715,507	+		GFF2693	0.26	-0.5
2,715,514	-		GFF2693	0.26	-0.2
2,715,514	-		GFF2693	0.26	-0.5
2,715,514	-		GFF2693	0.26	+0.7
2,715,514	-		GFF2693	0.26	-0.4
2,715,514	-		GFF2693	0.26	+0.1
2,715,514	-		GFF2693	0.26	+0.8
2,715,514	-		GFF2693	0.26	+0.6
2,715,514	-		GFF2693	0.26	+1.2
2,715,514	-		GFF2693	0.26	+1.1
2,715,514	-		GFF2693	0.26	-0.1
2,715,514	-		GFF2693	0.26	+0.7
2,715,514	-		GFF2693	0.26	-0.1
2,715,516	-		GFF2693	0.26	+0.3
2,715,526	+		GFF2693	0.27	+0.3
2,715,526	+		GFF2693	0.27	-1.6
2,715,526	+		GFF2693	0.27	-0.4
2,715,531	+		GFF2693	0.28	+0.6
2,715,531	+		GFF2693	0.28	+0.3
2,715,531	+		GFF2693	0.28	-0.2
2,715,531	+		GFF2693	0.28	+1.0
2,715,533	-		GFF2693	0.28	-1.6
2,715,534	-		GFF2693	0.28	+1.1
2,715,534	-		GFF2693	0.28	+0.7
2,715,534	-		GFF2693	0.28	-2.1
2,715,534	-		GFF2693	0.28	-1.4
2,715,534	-		GFF2693	0.28	-1.4
2,715,534	-		GFF2693	0.28	-0.7
2,715,534	-		GFF2693	0.28	-0.4
2,715,536	+		GFF2693	0.28	+0.4
2,715,536	+		GFF2693	0.28	-0.9
2,715,539	-		GFF2693	0.28	+0.4
2,715,539	-		GFF2693	0.28	+1.2
2,715,539	-		GFF2693	0.28	-0.4
2,715,548	-		GFF2693	0.29	+0.3
2,715,555	-		GFF2693	0.29	+0.5
2,715,555	-		GFF2693	0.29	-0.4
2,715,557	+		GFF2693	0.30	-2.0
2,715,557	+		GFF2693	0.30	+1.0
2,715,557	+		GFF2693	0.30	-1.3
2,715,557	+		GFF2693	0.30	+1.2
2,715,557	+		GFF2693	0.30	-1.6
2,715,557	+		GFF2693	0.30	+0.4
2,715,557	+		GFF2693	0.30	+1.0
2,715,557	+		GFF2693	0.30	-0.5
2,715,557	+		GFF2693	0.30	-1.5
2,715,562	+		GFF2693	0.30	-1.3
2,715,563	-		GFF2693	0.30	+1.0
2,715,565	-		GFF2693	0.30	+0.1
2,715,565	-		GFF2693	0.30	-1.2
2,715,565	-		GFF2693	0.30	-0.0
2,715,565	-		GFF2693	0.30	-0.1
2,715,565	-		GFF2693	0.30	+0.3
2,715,565	-		GFF2693	0.30	-0.1
2,715,565	-		GFF2693	0.30	-1.0
2,715,570	-		GFF2693	0.30	-0.2
2,715,570	-		GFF2693	0.30	-0.2
2,715,570	-		GFF2693	0.30	+0.6
2,715,577	-		GFF2693	0.31	+0.9
2,715,588	-		GFF2693	0.32	-2.4
2,715,596	-		GFF2693	0.32	+0.5
2,715,599	-		GFF2693	0.33	-1.2
2,715,599	-		GFF2693	0.33	-0.8
2,715,604	+		GFF2693	0.33	+0.0
2,715,612	-		GFF2693	0.34	-0.7
2,715,612	-		GFF2693	0.34	+0.2
2,715,618	+		GFF2693	0.34	-2.0
2,715,619	+		GFF2693	0.34	+1.6
2,715,624	+		GFF2693	0.35	+1.3
2,715,624	+		GFF2693	0.35	-1.2
2,715,627	-		GFF2693	0.35	+0.3
2,715,627	-		GFF2693	0.35	-0.7
2,715,632	-		GFF2693	0.35	+0.0
2,715,632	-		GFF2693	0.35	-0.1
2,715,632	-		GFF2693	0.35	-1.4
2,715,632	-		GFF2693	0.35	-0.3
2,715,632	-		GFF2693	0.35	-0.5
2,715,640	+		GFF2693	0.36	-0.1
2,715,645	+		GFF2693	0.36	+0.6
2,715,645	+		GFF2693	0.36	-2.4
2,715,645	+		GFF2693	0.36	-0.6
2,715,651	-		GFF2693	0.37	-1.6
2,715,653	-		GFF2693	0.37	-1.7
2,715,664	+		GFF2693	0.38	+0.5
2,715,672	+		GFF2693	0.38	-0.2
2,715,672	+		GFF2693	0.38	-1.9
2,715,672	+		GFF2693	0.38	+0.0
2,715,680	-		GFF2693	0.39	-0.8
2,715,684	+		GFF2693	0.39	+0.6
2,715,685	+		GFF2693	0.39	-0.1
2,715,690	+		GFF2693	0.39	+0.4
2,715,690	+		GFF2693	0.39	-1.5
2,715,693	-		GFF2693	0.40	-0.6
2,715,698	-		GFF2693	0.40	+0.2
2,715,713	-		GFF2693	0.41	+0.6
2,715,719	-		GFF2693	0.42	-1.5
2,715,732	+		GFF2693	0.43	+1.3
2,715,738	+		GFF2693	0.43	+0.4
2,715,739	-		GFF2693	0.43	-0.2
2,715,752	+		GFF2693	0.44	+0.5
2,715,752	+		GFF2693	0.44	+0.3
2,715,752	+		GFF2693	0.44	+0.0
2,715,752	+		GFF2693	0.44	+0.1
2,715,752	+		GFF2693	0.44	+0.3
2,715,752	+		GFF2693	0.44	-1.3
2,715,752	+		GFF2693	0.44	+0.7
2,715,752	+		GFF2693	0.44	-0.4
2,715,752	+		GFF2693	0.44	-2.0
2,715,757	+		GFF2693	0.44	-0.0
2,715,757	+		GFF2693	0.44	-0.7
2,715,758	+		GFF2693	0.45	-0.9
2,715,758	+		GFF2693	0.45	-1.4
2,715,758	+		GFF2693	0.45	+0.4
2,715,758	+		GFF2693	0.45	+0.4
2,715,758	+		GFF2693	0.45	-1.1
2,715,758	+		GFF2693	0.45	-0.8
2,715,760	-		GFF2693	0.45	-1.1
2,715,760	-		GFF2693	0.45	-1.2
2,715,760	-		GFF2693	0.45	-2.5
2,715,760	-		GFF2693	0.45	+0.3
2,715,760	-		GFF2693	0.45	-0.8
2,715,763	+		GFF2693	0.45	-0.4
2,715,766	-		GFF2693	0.45	+0.0
2,715,766	-		GFF2693	0.45	-0.3
2,715,766	-		GFF2693	0.45	+0.3
2,715,795	-		GFF2693	0.47	-1.0
2,715,844	-		GFF2693	0.51	+0.0
2,715,851	+		GFF2693	0.51	-1.1
2,715,851	+		GFF2693	0.51	-1.3
2,715,851	+		GFF2693	0.51	-0.2
2,715,851	+		GFF2693	0.51	-1.9
2,715,851	+		GFF2693	0.51	+0.2
2,715,857	-		GFF2693	0.52	+0.7
2,715,859	-		GFF2693	0.52	+0.0
2,715,873	-		GFF2693	0.53	+0.9
2,715,907	+		GFF2693	0.56	-0.9
2,715,914	+		GFF2693	0.56	+0.8
2,715,915	-		GFF2693	0.56	-1.1
2,715,917	+		GFF2693	0.56	-0.4
2,715,917	+		GFF2693	0.56	-0.7
2,715,917	+		GFF2693	0.56	-1.4
2,715,917	+		GFF2693	0.56	+0.4
2,715,917	+		GFF2693	0.56	-1.2
2,715,917	+		GFF2693	0.56	+0.0
2,715,917	+		GFF2693	0.56	-1.4
2,715,922	-		GFF2693	0.57	+1.3
2,715,924	-		GFF2693	0.57	+0.4
2,715,924	-		GFF2693	0.57	-1.2
2,715,925	-		GFF2693	0.57	+0.2
2,715,925	-		GFF2693	0.57	-0.5
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