Strain Fitness in Sphingobium sp. HT1-2 around GFF2657

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,675,747	+				-0.4
2,675,747	+				+1.7
2,675,747	+				+1.3
2,675,762	+				+1.0
2,675,762	+				-1.2
2,675,770	-				+0.3
2,675,770	-				-0.9
2,675,772	+				+0.2
2,675,772	+				-0.7
2,675,775	-				+1.3
2,676,417	+				-1.3
2,676,418	+				-0.6
2,676,418	+				-2.5
2,676,418	+				-1.2
2,676,418	+				-0.2
2,676,423	+				-1.4
2,676,425	-				+0.1
2,676,426	-				-1.1
2,676,426	-				-1.2
2,676,426	-				-1.1
2,676,426	-				-2.8
2,676,426	-				-0.9
2,676,426	-				-0.4
2,676,426	-				-1.7
2,676,426	-				-1.2
2,676,426	-				-1.6
2,676,436	+				-2.2
2,676,437	-				+0.2
2,676,444	+				-0.1
2,676,449	+				-0.7
2,676,457	-				-1.2
2,676,470	-				+0.3
2,676,472	+				+0.8
2,676,472	+				+0.4
2,676,473	-				+0.1
2,676,480	-				-2.1
2,676,498	+				-0.2
2,676,499	+				-1.3
2,676,507	-				-0.3
2,676,512	-				+0.4
2,676,517	-				+0.4
2,676,547	+		GFF2657	0.10	+1.3
2,676,572	-		GFF2657	0.14	-1.0
2,676,572	-		GFF2657	0.14	+1.3
2,676,572	-		GFF2657	0.14	+0.9
2,676,615	+		GFF2657	0.20	-0.4
2,676,620	+		GFF2657	0.21	+0.4
2,676,620	+		GFF2657	0.21	-0.4
2,676,628	+		GFF2657	0.22	-0.2
2,676,628	-		GFF2657	0.22	+0.3
2,676,628	-		GFF2657	0.22	-0.5
2,676,643	+		GFF2657	0.24	+0.1
2,676,643	+		GFF2657	0.24	-0.4
2,676,651	-		GFF2657	0.25	-0.3
2,676,651	-		GFF2657	0.25	+1.0
2,676,651	-		GFF2657	0.25	-0.7
2,676,671	+		GFF2657	0.28	+0.7
2,676,671	+		GFF2657	0.28	-1.8
2,676,671	+		GFF2657	0.28	-0.2
2,676,671	+		GFF2657	0.28	-0.9
2,676,671	+		GFF2657	0.28	-0.7
2,676,676	+		GFF2657	0.29	-0.5
2,676,679	-		GFF2657	0.29	-2.1
2,676,679	-		GFF2657	0.29	-0.7
2,676,684	-		GFF2657	0.30	+0.1
2,676,684	-		GFF2657	0.30	-1.0
2,676,684	-		GFF2657	0.30	+0.1
2,676,695	-		GFF2657	0.31	+1.2
2,676,734	+		GFF2657	0.37	-0.4
2,676,739	+		GFF2657	0.38	+0.5
2,676,739	+		GFF2657	0.38	-0.7
2,676,742	-		GFF2657	0.38	+0.6
2,676,753	-		GFF2657	0.40	-0.0
2,676,760	+		GFF2657	0.41	-0.7
2,676,786	+		GFF2657	0.44	+0.3
2,676,800	-		GFF2657	0.46	-0.2
2,676,811	+		GFF2657	0.48	-0.3
2,676,830	-		GFF2657	0.51	-2.6
2,676,832	+		GFF2657	0.51	-2.1
2,676,832	+		GFF2657	0.51	-1.0
2,676,832	+		GFF2657	0.51	+0.2
2,676,832	+		GFF2657	0.51	+1.5
2,676,832	+		GFF2657	0.51	+0.9
2,676,832	+		GFF2657	0.51	-0.9
2,676,832	+		GFF2657	0.51	-2.1
2,676,832	+		GFF2657	0.51	-0.3
2,676,832	+		GFF2657	0.51	-0.6
2,676,832	+		GFF2657	0.51	+1.3
2,676,832	+		GFF2657	0.51	+0.0
2,676,832	+		GFF2657	0.51	+0.7
2,676,840	-		GFF2657	0.52	+0.0
2,676,840	-		GFF2657	0.52	-1.4
2,676,840	-		GFF2657	0.52	-1.2
2,676,840	-		GFF2657	0.52	-0.3
2,676,840	-		GFF2657	0.52	-1.2
2,676,840	-		GFF2657	0.52	-1.2
2,676,840	-		GFF2657	0.52	-0.8
2,676,840	-		GFF2657	0.52	-0.8
2,676,840	-		GFF2657	0.52	-0.0
2,676,840	-		GFF2657	0.52	-0.5
2,676,840	-		GFF2657	0.52	-0.3
2,676,840	-		GFF2657	0.52	-1.6
2,676,840	-		GFF2657	0.52	+0.1
2,676,840	-		GFF2657	0.52	+0.3
2,676,840	-		GFF2657	0.52	-1.9
2,676,842	-		GFF2657	0.53	+1.8
2,676,847	+		GFF2657	0.53	-0.9
2,676,848	+		GFF2657	0.53	-0.3
2,676,868	+		GFF2657	0.56	-2.6
2,676,868	+		GFF2657	0.56	-2.1
2,676,868	+		GFF2657	0.56	-1.6
2,676,868	+		GFF2657	0.56	+0.1
2,676,868	+		GFF2657	0.56	+0.1
2,676,868	+		GFF2657	0.56	+0.1
2,676,868	+		GFF2657	0.56	+0.3
2,676,905	+		GFF2657	0.62	-0.0
2,676,905	+		GFF2657	0.62	+0.1
2,676,905	+		GFF2657	0.62	-0.2
2,676,907	-		GFF2657	0.62	+0.3
2,676,913	-		GFF2657	0.63	-0.1
2,676,913	-		GFF2657	0.63	-1.7
2,676,913	-		GFF2657	0.63	-0.4
2,676,930	+		GFF2657	0.65	-2.7
2,676,933	-		GFF2657	0.66	+0.4
2,676,969	+		GFF2657	0.71	-0.6
2,676,983	+		GFF2657	0.73	+1.8
2,676,990	-		GFF2657	0.74	+0.7
2,677,014	+		GFF2657	0.77	-0.2
2,677,030	+		GFF2657	0.79	-0.7
2,677,030	+		GFF2657	0.79	+0.2
2,677,030	+		GFF2657	0.79	-1.2
2,677,030	+		GFF2657	0.79	+0.7
2,677,030	+		GFF2657	0.79	-0.8
2,677,035	+		GFF2657	0.80	+0.7
2,677,036	+		GFF2657	0.80	+0.3
2,677,038	-		GFF2657	0.81	+0.0
2,677,038	-		GFF2657	0.81	+0.4
2,677,038	-		GFF2657	0.81	+0.2
2,677,038	-		GFF2657	0.81	+0.7
2,677,043	+		GFF2657	0.81	+0.4
2,677,048	+		GFF2657	0.82	+0.9
2,677,051	-		GFF2657	0.82	-1.4
2,677,051	-		GFF2657	0.82	-0.0
2,677,056	-		GFF2657	0.83	-0.2
2,677,060	+		GFF2657	0.84	+1.2
2,677,099	+		GFF2657	0.89	-1.1
2,677,115	+				+0.1
2,677,119	+				+0.4
2,677,119	+				+0.7
2,677,119	+				+0.6
2,677,119	+				+1.6
2,677,119	+				+0.7
2,677,119	+				+0.1
2,677,127	-				-0.7
2,677,127	-				+0.0
2,677,135	-				-1.2
2,677,142	+				+0.3
2,677,147	+				-1.6
2,677,147	+				-1.4
2,677,147	+				-1.3
2,677,147	+				-1.0
2,677,152	+				+2.3
2,677,152	+				-0.0
2,677,160	-				+0.7
2,677,162	+				-1.1
2,677,162	+				-0.7
2,677,170	-				+0.9
2,677,170	-				-0.4
2,677,170	-				-1.0
2,677,172	+				-1.2
2,677,180	-				-0.2
2,677,198	+				-0.2
2,677,198	+				+0.1
2,677,220	+				-2.1
2,677,228	-				-0.1
2,677,228	-				+1.0
2,677,228	-				-0.1
2,677,256	+				-0.1
2,677,256	+				-0.7
2,677,259	-				-0.7
2,677,275	+				-1.2
2,677,275	+				+0.9
2,677,295	-				-0.9
2,677,806	-				-0.4
2,677,834	+				+0.2
2,677,839	+				-0.7
2,677,842	-				-0.7
2,677,847	-				+0.6
2,677,847	-				+0.3
2,677,861	-				+0.3
2,677,872	+				-0.2
2,677,872	+				-0.5
2,677,873	+				+0.6
2,677,880	-				-0.4
2,677,880	-				+0.3
2,677,907	+				+0.4
2,677,907	-				-0.5
2,677,910	-				-1.7
2,677,910	-				-0.3
2,677,915	-				-0.1
2,677,918	+				-0.1
2,677,935	+				-0.1
2,677,940	-				+0.6
2,677,941	+				+0.3
2,677,999	+		GFF2659	0.19	+0.8
2,677,999	+		GFF2659	0.19	+0.1
2,677,999	+		GFF2659	0.19	-0.7
2,678,007	-		GFF2659	0.20	-1.0
2,678,007	-		GFF2659	0.20	-0.3
2,678,007	-		GFF2659	0.20	-0.2
2,678,007	-		GFF2659	0.20	+0.3
2,678,009	+		GFF2659	0.20	+0.8
2,678,009	+		GFF2659	0.20	-0.6
2,678,017	-		GFF2659	0.22	-0.0
2,678,017	-		GFF2659	0.22	-0.6
2,678,017	-		GFF2659	0.22	-0.0
2,678,030	-		GFF2659	0.24	-1.6
2,678,032	-		GFF2659	0.24	-0.9
2,678,036	-		GFF2659	0.25	+0.9
2,678,080	-		GFF2659	0.32	-1.6
2,678,082	+		GFF2659	0.33	+0.3
2,678,087	+		GFF2659	0.34	-0.7
2,678,090	-		GFF2659	0.34	-1.2
2,678,092	+		GFF2659	0.34	+0.7
2,678,092	+		GFF2659	0.34	-1.4
2,678,092	+		GFF2659	0.34	-0.9
2,678,100	-		GFF2659	0.36	-0.0
2,678,100	-		GFF2659	0.36	-0.3
2,678,100	-		GFF2659	0.36	+0.0
2,678,100	-		GFF2659	0.36	-0.6
2,678,100	-		GFF2659	0.36	+0.2
2,678,100	-		GFF2659	0.36	-0.2
2,678,100	-		GFF2659	0.36	-0.9
2,678,100	-		GFF2659	0.36	-1.4
2,678,105	-		GFF2659	0.37	+0.4
2,678,127	+		GFF2659	0.40	-2.0
2,678,127	+		GFF2659	0.40	+0.4
2,678,162	+		GFF2659	0.46	-0.4