Strain Fitness in Sphingobium sp. HT1-2 around GFF2548

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,566,443	+				-1.5
2,566,445	+				+0.4
2,566,451	-				-0.4
2,566,451	-				-0.4
2,566,455	+				-0.2
2,566,457	-				+0.1
2,566,465	-				+0.1
2,566,477	-				-2.2
2,566,513	+				-1.4
2,566,535	-				+0.9
2,566,537	+				-0.9
2,566,568	+		GFF2548	0.13	+1.5
2,566,568	+		GFF2548	0.13	-1.6
2,566,576	-		GFF2548	0.14	-0.7
2,566,586	+		GFF2548	0.15	+0.1
2,566,594	-		GFF2548	0.16	-0.4
2,566,594	-		GFF2548	0.16	+0.0
2,566,597	+		GFF2548	0.16	-0.3
2,566,597	+		GFF2548	0.16	-0.9
2,566,600	-		GFF2548	0.17	-1.7
2,566,602	+		GFF2548	0.17	-1.3
2,566,602	+		GFF2548	0.17	-0.1
2,566,602	+		GFF2548	0.17	-1.0
2,566,607	+		GFF2548	0.18	-1.9
2,566,610	-		GFF2548	0.18	+0.4
2,566,610	-		GFF2548	0.18	+0.2
2,566,610	-		GFF2548	0.18	+0.4
2,566,610	-		GFF2548	0.18	-0.1
2,566,610	-		GFF2548	0.18	+0.5
2,566,612	+		GFF2548	0.18	+0.3
2,566,615	-		GFF2548	0.19	-0.5
2,566,615	-		GFF2548	0.19	+0.4
2,566,620	-		GFF2548	0.19	+0.0
2,566,635	-		GFF2548	0.21	+0.8
2,566,643	+		GFF2548	0.22	-0.2
2,566,643	+		GFF2548	0.22	+0.3
2,566,651	-		GFF2548	0.23	+0.0
2,566,668	-		GFF2548	0.25	-0.9
2,566,694	+		GFF2548	0.28	+0.6
2,566,699	+		GFF2548	0.29	+0.0
2,566,702	-		GFF2548	0.29	+0.1
2,566,712	+		GFF2548	0.30	+0.4
2,566,715	-		GFF2548	0.31	-0.4
2,566,715	-		GFF2548	0.31	-1.4
2,566,720	-		GFF2548	0.31	-1.2
2,566,720	-		GFF2548	0.31	+0.0
2,566,720	-		GFF2548	0.31	-1.0
2,566,720	-		GFF2548	0.31	+0.5
2,566,722	+		GFF2548	0.32	-0.8
2,566,722	+		GFF2548	0.32	-0.3
2,566,722	+		GFF2548	0.32	-1.4
2,566,730	-		GFF2548	0.33	-0.4
2,566,732	+		GFF2548	0.33	+0.4
2,566,750	+		GFF2548	0.35	-0.9
2,566,760	+		GFF2548	0.36	-2.0
2,566,760	+		GFF2548	0.36	+1.7
2,566,763	-		GFF2548	0.37	-0.7
2,566,763	-		GFF2548	0.37	-1.7
2,566,794	-		GFF2548	0.40	-0.6
2,566,804	+		GFF2548	0.42	+0.4
2,566,804	+		GFF2548	0.42	-0.7
2,566,816	+		GFF2548	0.43	+0.8
2,566,833	-		GFF2548	0.45	+0.2
2,566,835	+		GFF2548	0.45	-0.2
2,566,838	-		GFF2548	0.46	-1.6
2,566,843	-		GFF2548	0.46	-1.7
2,566,849	+		GFF2548	0.47	-2.5
2,566,849	+		GFF2548	0.47	-1.0
2,566,849	+		GFF2548	0.47	+0.4
2,566,854	+		GFF2548	0.48	+0.1
2,566,857	-		GFF2548	0.48	-0.7
2,566,859	+		GFF2548	0.48	-0.6
2,566,870	+		GFF2548	0.50	-0.4
2,566,878	-		GFF2548	0.51	+0.1
2,566,878	-		GFF2548	0.51	+1.0
2,566,880	+		GFF2548	0.51	+0.0
2,566,880	+		GFF2548	0.51	-1.2
2,566,880	+		GFF2548	0.51	+1.0
2,566,880	+		GFF2548	0.51	+1.1
2,566,880	+		GFF2548	0.51	-0.7
2,566,881	-		GFF2548	0.51	-0.9
2,566,936	+		GFF2548	0.58	+1.1
2,566,936	-		GFF2548	0.58	-0.4
2,566,936	-		GFF2548	0.58	-1.2
2,566,941	+		GFF2548	0.58	-0.1
2,566,989	+		GFF2548	0.64	-0.2
2,566,989	+		GFF2548	0.64	-1.6
2,566,989	+		GFF2548	0.64	-0.3
2,566,989	+		GFF2548	0.64	-0.6
2,566,994	+		GFF2548	0.65	-1.4
2,566,997	-		GFF2548	0.65	+0.3
2,566,997	-		GFF2548	0.65	+0.2
2,566,997	-		GFF2548	0.65	+0.2
2,566,997	-		GFF2548	0.65	+0.5
2,567,002	-		GFF2548	0.66	+0.5
2,567,002	-		GFF2548	0.66	+0.4
2,567,017	-		GFF2548	0.68	+0.4
2,567,017	-		GFF2548	0.68	+0.4
2,567,029	+		GFF2548	0.69	-1.9
2,567,029	+		GFF2548	0.69	+0.7
2,567,034	+		GFF2548	0.70	-2.0
2,567,036	-		GFF2548	0.70	-0.6
2,567,037	-		GFF2548	0.70	-0.8
2,567,043	+		GFF2548	0.71	-2.2
2,567,045	+		GFF2548	0.71	-0.6
2,567,045	-		GFF2548	0.71	-0.3
2,567,051	-		GFF2548	0.72	+0.4
2,567,053	+		GFF2548	0.72	+0.4
2,567,053	+		GFF2548	0.72	-0.5
2,567,053	-		GFF2548	0.72	+1.3
2,567,056	-		GFF2548	0.73	-2.1
2,567,061	-		GFF2548	0.73	+0.8
2,567,089	+		GFF2548	0.77	+0.1
2,567,102	-		GFF2548	0.78	-1.5
2,567,116	-		GFF2548	0.80	+0.9
2,567,125	+		GFF2548	0.81	-1.5
2,567,144	-		GFF2548	0.83	+2.1
2,567,149	-		GFF2548	0.84	-1.9
2,567,167	+		GFF2548	0.86	-0.6
2,567,167	+		GFF2548	0.86	-0.0
2,567,175	-		GFF2548	0.87	+0.8
2,567,175	-		GFF2548	0.87	-0.7
2,567,186	+		GFF2548	0.88	-0.0
2,567,194	-		GFF2548	0.89	+0.4
2,567,194	-		GFF2548	0.89	-1.4
2,567,233	+				+0.6
2,567,241	-				-1.2
2,567,241	-				-1.8
2,567,241	-				+0.4
2,567,248	+				-0.1
2,567,248	+				-1.9
2,567,248	+				+0.5
2,567,248	+				-0.0
2,567,252	+				-2.5
2,567,283	+				-0.2
2,567,291	-				-0.1
2,567,326	+				-1.2
2,567,326	+				-1.4
2,567,328	+				+1.2
2,567,334	-				+1.1
2,567,334	-				+0.1
2,567,334	-				+0.0
2,567,334	-				-0.1
2,567,341	-				+0.5
2,567,341	-				+0.8
2,567,341	-				-1.0
2,567,341	-				+0.4
2,567,360	+				-1.2
2,567,368	-				-0.8
2,567,378	-				+0.1
2,567,385	+				-1.3
2,567,417	+				+0.1
2,567,417	+				+0.5
2,567,442	+				-0.2
2,567,442	+				-2.2
2,567,442	+				+0.6
2,567,450	-				-0.2
2,567,450	-				-0.2
2,567,450	-				-0.5
2,567,450	-				+0.3
2,567,452	+				+2.0
2,567,455	-				-0.0
2,567,463	+				+0.6
2,567,471	-				-0.1
2,567,471	-				-0.4
2,567,471	-				-0.5
2,567,474	+				-0.4
2,567,520	+		GFF2549	0.11	-1.1
2,567,520	+		GFF2549	0.11	-0.0
2,567,520	+		GFF2549	0.11	+0.2
2,567,520	+		GFF2549	0.11	+0.4
2,567,520	+		GFF2549	0.11	-0.8
2,567,520	+		GFF2549	0.11	+0.9
2,567,520	+		GFF2549	0.11	+0.2
2,567,520	+		GFF2549	0.11	+0.0
2,567,520	+		GFF2549	0.11	+0.1
2,567,528	-		GFF2549	0.11	-0.3
2,567,528	-		GFF2549	0.11	+1.0
2,567,528	-		GFF2549	0.11	-0.2
2,567,528	-		GFF2549	0.11	+1.4
2,567,528	-		GFF2549	0.11	-0.9
2,567,528	-		GFF2549	0.11	+0.9
2,567,538	+		GFF2549	0.12	-0.2
2,567,542	-		GFF2549	0.12	-1.7
2,567,565	-		GFF2549	0.13	-0.4
2,567,565	-		GFF2549	0.13	-0.8
2,567,575	-		GFF2549	0.13	-0.2
2,567,608	+		GFF2549	0.15	+0.5
2,567,608	+		GFF2549	0.15	-1.2
2,567,608	+		GFF2549	0.15	-1.9
2,567,635	-		GFF2549	0.16	-0.1
2,567,670	+		GFF2549	0.18	-2.8
2,567,678	-		GFF2549	0.18	-0.4
2,567,678	-		GFF2549	0.18	-0.9
2,567,683	-		GFF2549	0.18	-0.8
2,567,683	-		GFF2549	0.18	+0.1
2,567,688	+		GFF2549	0.19	+1.6
2,567,692	+		GFF2549	0.19	-0.5
2,567,692	+		GFF2549	0.19	-0.7
2,567,695	-		GFF2549	0.19	-0.2
2,567,739	+		GFF2549	0.21	+0.2
2,567,753	+		GFF2549	0.21	-0.6
2,567,805	+		GFF2549	0.24	-1.8
2,567,810	+		GFF2549	0.24	-0.6
2,567,836	+		GFF2549	0.25	+0.4
2,567,882	-		GFF2549	0.27	+0.4
2,567,904	-		GFF2549	0.28	+0.5
2,567,911	+		GFF2549	0.29	-0.6
2,567,917	+		GFF2549	0.29	-0.5
2,567,931	-		GFF2549	0.29	+0.6
2,567,962	+		GFF2549	0.31	+0.4
2,567,962	+		GFF2549	0.31	-0.3
2,567,962	+		GFF2549	0.31	-0.3
2,567,970	-		GFF2549	0.31	-1.4
2,567,970	-		GFF2549	0.31	-0.4
2,567,970	-		GFF2549	0.31	-0.1
2,567,970	-		GFF2549	0.31	-0.4
2,568,014	-		GFF2549	0.33	-0.0
2,568,017	+		GFF2549	0.33	-2.8
2,568,017	+		GFF2549	0.33	+0.5
2,568,035	+		GFF2549	0.34	+0.5
2,568,043	-		GFF2549	0.35	-1.0
2,568,048	+		GFF2549	0.35	+0.1
2,568,048	+		GFF2549	0.35	-0.8
2,568,056	-		GFF2549	0.35	+0.0
2,568,056	-		GFF2549	0.35	-0.7
2,568,087	-		GFF2549	0.36	-1.7
2,568,113	-		GFF2549	0.38	+1.4
2,568,115	+		GFF2549	0.38	+0.6
2,568,115	+		GFF2549	0.38	+0.5
2,568,115	+		GFF2549	0.38	+0.1
2,568,115	+		GFF2549	0.38	+0.9
2,568,115	+		GFF2549	0.38	-0.4
2,568,123	-		GFF2549	0.38	+1.1
2,568,123	-		GFF2549	0.38	+0.6
2,568,149	+		GFF2549	0.39	-0.6
2,568,150	+		GFF2549	0.39	+0.8
2,568,158	-		GFF2549	0.40	+0.2
2,568,194	-		GFF2549	0.41	+0.7
2,568,196	+		GFF2549	0.41	-0.3
2,568,226	+		GFF2549	0.43	-0.6
2,568,226	+		GFF2549	0.43	+1.0
2,568,226	+		GFF2549	0.43	+0.0
2,568,234	-		GFF2549	0.43	-0.3
2,568,249	+		GFF2549	0.44	-2.2
2,568,257	-		GFF2549	0.44	-0.9
2,568,257	-		GFF2549	0.44	+0.2
2,568,260	+		GFF2549	0.44	-2.3
2,568,267	+		GFF2549	0.45	+1.2
2,568,267	-		GFF2549	0.45	-2.5