Strain Fitness in Sphingobium sp. HT1-2 around GFF2511

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,532,235	+				-0.5
2,532,238	-				-1.5
2,532,243	-				+0.9
2,532,253	-				+0.9
2,532,255	+				+0.1
2,532,286	+				+1.4
2,532,286	+				-1.2
2,532,286	+				-0.2
2,532,294	-				-1.4
2,532,294	-				-1.0
2,532,294	-				+0.6
2,532,294	-				+0.8
2,532,294	-				-0.4
2,532,294	-				+1.0
2,532,294	-				-0.8
2,532,294	-				-0.5
2,532,295	-				-0.6
2,532,345	+				-1.8
2,532,345	+				+1.0
2,532,353	-				+0.9
2,532,353	-				+0.9
2,532,356	+				-0.8
2,532,356	+				+0.8
2,532,356	+				-0.7
2,532,364	-				-1.9
2,532,365	+				+0.7
2,532,373	-				-0.4
2,532,379	+				-0.9
2,532,379	-				+0.8
2,532,428	+		GFF2509	0.47	+0.8
2,532,429	+		GFF2509	0.47	+0.1
2,532,442	+		GFF2509	0.58	-0.6
2,532,460	+		GFF2509	0.73	+0.4
2,532,471	+		GFF2509	0.82	-0.8
2,532,471	+		GFF2509	0.82	+0.1
2,532,471	+		GFF2509	0.82	-1.2
2,532,471	+		GFF2509	0.82	-0.8
2,532,471	+		GFF2509	0.82	-1.8
2,532,471	+		GFF2509	0.82	-0.4
2,532,479	-		GFF2509	0.89	+1.5
2,532,479	-		GFF2509	0.89	-0.6
2,532,479	-		GFF2509	0.89	-1.5
2,532,479	-		GFF2509	0.89	-0.4
2,532,479	-		GFF2509	0.89	+0.4
2,532,479	-		GFF2509	0.89	-0.0
2,532,488	+				+1.4
2,532,491	-				+1.1
2,532,493	+				+1.7
2,532,494	+				-0.6
2,532,530	-				-1.5
2,532,530	-				-1.0
2,532,532	-				+1.7
2,532,539	+				-1.4
2,532,547	-				-0.2
2,532,547	-				+0.4
2,532,552	-				-1.6
2,532,552	-				+0.0
2,532,552	-				-1.6
2,532,557	-				-1.3
2,532,561	+				-1.2
2,532,566	+				-0.6
2,532,566	+				-0.3
2,532,569	-				+0.2
2,532,569	-				-0.0
2,532,582	+				-0.2
2,532,614	+		GFF2510	0.10	-0.7
2,532,627	-		GFF2510	0.12	+0.3
2,532,632	-		GFF2510	0.13	+0.4
2,532,651	+		GFF2510	0.15	+0.3
2,532,659	-		GFF2510	0.17	+0.9
2,532,677	+		GFF2510	0.19	+0.7
2,532,685	-		GFF2510	0.20	-0.9
2,532,685	-		GFF2510	0.20	+0.7
2,532,718	+		GFF2510	0.25	+0.5
2,532,723	+		GFF2510	0.26	+0.5
2,532,731	-		GFF2510	0.27	-1.9
2,532,731	-		GFF2510	0.27	-1.6
2,532,731	-		GFF2510	0.27	-1.0
2,532,748	+		GFF2510	0.30	+0.3
2,532,748	+		GFF2510	0.30	+0.6
2,532,751	-		GFF2510	0.30	+0.0
2,532,756	-		GFF2510	0.31	-1.5
2,532,770	-		GFF2510	0.33	-0.1
2,532,770	-		GFF2510	0.33	-1.1
2,532,810	+		GFF2510	0.39	-0.5
2,532,811	+		GFF2510	0.39	-1.1
2,532,824	+		GFF2510	0.41	-2.4
2,532,824	+		GFF2510	0.41	+1.6
2,532,832	+		GFF2510	0.42	+0.0
2,532,832	-		GFF2510	0.42	-0.6
2,532,837	-		GFF2510	0.43	-1.5
2,532,861	+		GFF2510	0.46	-0.5
2,532,861	+		GFF2510	0.46	-1.2
2,532,866	+		GFF2510	0.47	-0.5
2,532,871	+		GFF2510	0.47	+0.7
2,532,871	+		GFF2510	0.47	+1.0
2,532,871	+		GFF2510	0.47	-0.9
2,532,874	-		GFF2510	0.48	+0.6
2,532,884	+		GFF2510	0.49	-1.6
2,532,885	+		GFF2510	0.49	+1.1
2,532,890	+		GFF2510	0.50	-1.2
2,532,891	+		GFF2510	0.50	-1.4
2,532,897	-		GFF2510	0.51	-0.2
2,532,897	-		GFF2510	0.51	-0.9
2,532,898	-		GFF2510	0.51	-3.1
2,532,954	-		GFF2510	0.60	-0.8
2,532,960	+		GFF2510	0.60	+0.6
2,532,960	+		GFF2510	0.60	+1.3
2,532,960	+		GFF2510	0.60	-0.2
2,532,965	+		GFF2510	0.61	-2.1
2,532,968	-		GFF2510	0.62	-1.2
2,532,968	-		GFF2510	0.62	+0.2
2,532,968	-		GFF2510	0.62	+0.5
2,532,968	-		GFF2510	0.62	+0.8
2,532,968	-		GFF2510	0.62	-1.0
2,532,973	-		GFF2510	0.62	-0.2
2,532,980	+		GFF2510	0.63	+0.5
2,532,985	+		GFF2510	0.64	-1.9
2,532,993	-		GFF2510	0.65	-1.9
2,532,994	-		GFF2510	0.65	-0.7
2,533,010	+		GFF2510	0.68	-0.4
2,533,016	-		GFF2510	0.69	+0.6
2,533,018	-		GFF2510	0.69	-0.8
2,533,037	+		GFF2510	0.72	+0.9
2,533,050	+		GFF2510	0.74	-1.7
2,533,063	+		GFF2510	0.75	-0.7
2,533,063	+		GFF2510	0.75	-2.6
2,533,063	+		GFF2510	0.75	-0.1
2,533,063	+		GFF2510	0.75	-1.6
2,533,071	-		GFF2510	0.77	-0.9
2,533,071	-		GFF2510	0.77	+0.1
2,533,071	-		GFF2510	0.77	+0.0
2,533,071	-		GFF2510	0.77	-2.8
2,533,071	-		GFF2510	0.77	-1.8
2,533,071	-		GFF2510	0.77	+0.6
2,533,071	-		GFF2510	0.77	+0.3
2,533,095	+		GFF2510	0.80	-0.4
2,533,095	+		GFF2510	0.80	+0.1
2,533,095	+		GFF2510	0.80	-0.2
2,533,095	+		GFF2510	0.80	-0.2
2,533,095	+		GFF2510	0.80	+0.5
2,533,095	+		GFF2510	0.80	+0.2
2,533,103	-		GFF2510	0.81	-1.1
2,533,103	-		GFF2510	0.81	+0.7
2,533,103	-		GFF2510	0.81	+0.0
2,533,103	-		GFF2510	0.81	+0.4
2,533,103	-		GFF2510	0.81	-1.7
2,533,103	-		GFF2510	0.81	+1.0
2,533,103	-		GFF2510	0.81	+1.6
2,533,105	+		GFF2510	0.82	-0.3
2,533,122	+		GFF2510	0.84	-0.1
2,533,130	-		GFF2510	0.85	+0.3
2,533,130	-		GFF2510	0.85	+0.7
2,533,148	+		GFF2510	0.88	-0.4
2,533,148	+		GFF2510	0.88	+1.0
2,533,156	-		GFF2510	0.89	-1.6
2,533,161	+		GFF2510	0.90	+0.1
2,533,161	+		GFF2510	0.90	-1.3
2,533,161	+		GFF2510	0.90	+0.4
2,533,169	-				-0.3
2,533,169	-				-1.2
2,533,169	-				-0.1
2,533,169	-				+0.6
2,533,169	-				-0.4
2,533,171	+				+0.6
2,533,203	+				+0.7
2,533,203	+				-1.2
2,533,203	+				-0.2
2,533,211	-				-1.2
2,533,216	+				-0.1
2,533,224	+				+0.5
2,533,239	+				+0.0
2,533,239	+				+1.2
2,533,239	+				+1.2
2,533,239	+				+0.8
2,533,239	+				-1.0
2,533,239	+				-0.8
2,533,247	-				-1.5
2,533,247	-				-1.2
2,533,247	-				-0.7
2,533,247	-				+0.6
2,533,247	-				+0.3
2,533,257	+				-0.6
2,533,257	+				-0.2
2,533,260	-				+1.0
2,533,269	-				+0.4
2,533,277	+				-2.4
2,533,277	+				+0.6
2,533,277	+				-1.0
2,533,282	+				+1.9
2,533,282	+				-0.1
2,533,282	+				-0.5
2,533,283	-				-0.0
2,533,284	-				-0.8
2,533,284	-				-0.0
2,533,285	-				-1.4
2,533,285	-				-0.4
2,533,285	-				+0.8
2,533,285	-				+0.5
2,533,285	-				-0.7
2,533,287	+				-1.2
2,533,287	+				-1.6
2,533,325	-		GFF2511	0.10	-0.4
2,533,335	+		GFF2511	0.11	-0.1
2,533,335	+		GFF2511	0.11	-0.2
2,533,335	+		GFF2511	0.11	+0.4
2,533,335	-		GFF2511	0.11	-0.2
2,533,337	+		GFF2511	0.12	+0.1
2,533,343	-		GFF2511	0.12	-0.9
2,533,345	-		GFF2511	0.12	-0.8
2,533,356	+		GFF2511	0.14	-0.2
2,533,362	-		GFF2511	0.14	+1.1
2,533,372	-		GFF2511	0.15	-2.5
2,533,407	-		GFF2511	0.19	-1.1
2,533,407	-		GFF2511	0.19	-2.6
2,533,438	+		GFF2511	0.22	+0.1
2,533,438	+		GFF2511	0.22	+0.7
2,533,438	+		GFF2511	0.22	+0.0
2,533,446	-		GFF2511	0.23	+0.2
2,533,446	-		GFF2511	0.23	-0.7
2,533,446	-		GFF2511	0.23	+0.9
2,533,482	+		GFF2511	0.27	+0.8
2,533,490	-		GFF2511	0.28	-0.5
2,533,490	-		GFF2511	0.28	+0.1
2,533,502	+		GFF2511	0.29	+0.9
2,533,502	+		GFF2511	0.29	-1.2
2,533,502	+		GFF2511	0.29	-0.8
2,533,510	-		GFF2511	0.30	+0.1
2,533,510	-		GFF2511	0.30	+0.5
2,533,515	-		GFF2511	0.31	+0.6
2,533,517	+		GFF2511	0.31	+0.3
2,533,517	+		GFF2511	0.31	-0.0
2,533,517	+		GFF2511	0.31	+0.5
2,533,527	+		GFF2511	0.32	+0.4
2,533,527	+		GFF2511	0.32	+0.9
2,533,527	+		GFF2511	0.32	-1.1
2,533,548	+		GFF2511	0.34	-0.1
2,533,556	-		GFF2511	0.35	-0.2
2,533,557	-		GFF2511	0.35	-1.4
2,533,566	-		GFF2511	0.36	-0.3
2,533,571	-		GFF2511	0.37	+0.9
2,533,571	-		GFF2511	0.37	-0.1
2,533,571	-		GFF2511	0.37	-1.3
2,533,589	+		GFF2511	0.38	-0.5
2,533,597	-		GFF2511	0.39	+1.2
2,533,611	-		GFF2511	0.41	-0.2
2,533,612	-		GFF2511	0.41	-1.0
2,533,655	-		GFF2511	0.45	-0.1
2,533,679	-		GFF2511	0.48	-1.8
2,533,684	+		GFF2511	0.49	-0.3
2,533,722	+		GFF2511	0.53	-0.8
2,533,731	-		GFF2511	0.54	-0.1
2,533,756	+		GFF2511	0.56	+0.2
2,533,762	+		GFF2511	0.57	-0.2
2,533,773	+		GFF2511	0.58	-1.1
2,533,773	+		GFF2511	0.58	+0.2
2,533,778	+		GFF2511	0.59	-0.9
2,533,797	-		GFF2511	0.61	-0.1
2,533,815	-		GFF2511	0.63	-1.0
2,533,833	+		GFF2511	0.64	+1.0
2,533,850	+		GFF2511	0.66	-1.9
2,533,850	+		GFF2511	0.66	+0.6
2,533,850	+		GFF2511	0.66	-0.0
2,533,850	+		GFF2511	0.66	+0.7
2,533,850	+		GFF2511	0.66	-0.2
2,533,851	-		GFF2511	0.66	-2.0
2,533,856	-		GFF2511	0.67	-0.9
2,533,858	-		GFF2511	0.67	-1.6
2,533,858	-		GFF2511	0.67	-1.7
2,533,858	-		GFF2511	0.67	-0.6
2,533,858	-		GFF2511	0.67	+0.3
2,533,858	-		GFF2511	0.67	+0.0
2,533,858	-		GFF2511	0.67	-1.2
2,533,858	-		GFF2511	0.67	+0.6
2,533,858	-		GFF2511	0.67	+0.6
2,533,863	-		GFF2511	0.68	-1.4
2,533,863	-		GFF2511	0.68	-1.7
2,533,863	-		GFF2511	0.68	+0.2
2,533,882	+		GFF2511	0.70	+0.3
2,533,887	+		GFF2511	0.70	-1.8
2,533,887	+		GFF2511	0.70	-1.4
2,533,888	+		GFF2511	0.70	-0.5
2,533,890	-		GFF2511	0.71	+1.1
2,533,949	+		GFF2511	0.77	-1.8
2,533,982	-		GFF2511	0.80	-0.5
2,534,046	+		GFF2511	0.87	+0.5
2,534,046	+		GFF2511	0.87	+1.4
2,534,046	+		GFF2511	0.87	-0.3
2,534,046	+		GFF2511	0.87	-2.1
2,534,067	+		GFF2511	0.89	+0.1
2,534,067	+		GFF2511	0.89	-1.2
2,534,067	+		GFF2511	0.89	+0.6
2,534,067	+		GFF2511	0.89	+0.0
2,534,069	-		GFF2511	0.90	+0.4
2,534,074	+				+0.9
2,534,075	-				-0.6
2,534,100	+				-1.4
2,534,100	+				+0.7
2,534,105	+				-0.7
2,534,108	-				-0.8
2,534,108	-				-0.1
2,534,108	-				+0.5
2,534,111	+				+1.1
2,534,111	+				-0.6
2,534,113	-				-0.5
2,534,116	+				+0.7
2,534,116	+				+0.8
2,534,116	+				+0.2
2,534,116	+				+0.1
2,534,116	+				-0.9
2,534,119	-				+0.5
2,534,119	-				+0.8
2,534,121	+				-0.0
2,534,124	-				-0.5
2,534,124	-				-0.8
2,534,124	-				-2.9
2,534,129	-				-0.7
2,534,129	-				-1.0
2,534,137	+				-0.6
2,534,137	+				-0.6
2,534,144	+				+0.8
2,534,145	-				+0.1
2,534,180	+				+1.6
2,534,202	+				-0.9
2,534,202	+				-0.4
2,534,202	+				-0.0
2,534,202	+				-0.4
2,534,202	+				+0.4
2,534,202	+				-0.1
2,534,205	-				+0.5
2,534,207	+				-0.3
2,534,210	-				-1.7
2,534,210	-				+0.2
2,534,210	-				+0.3
2,534,210	-				+0.6
2,534,211	+				-0.9
2,534,217	+				-0.1
2,534,217	+				+0.4
2,534,220	-				+0.8
2,534,220	-				+0.9
2,534,220	-				+0.3
2,534,221	-				+0.8
2,534,236	-				-0.6
2,534,242	+				-0.4
2,534,247	+				+0.8
2,534,250	-				-1.5
2,534,252	+				-1.7
2,534,254	-				-1.4
2,534,255	-				-1.2
2,534,255	-				-1.2
2,534,255	-				+0.8
2,534,263	+		GFF2512	0.10	-0.4
2,534,265	-		GFF2512	0.10	-0.9
2,534,289	-		GFF2512	0.13	-0.1
2,534,352	-		GFF2512	0.19	-0.6
2,534,369	+		GFF2512	0.21	-1.2
2,534,369	+		GFF2512	0.21	+0.3
2,534,372	+		GFF2512	0.21	+0.9
2,534,379	+		GFF2512	0.22	+0.7
2,534,384	+		GFF2512	0.22	+2.0
2,534,384	+		GFF2512	0.22	-0.4
2,534,385	+		GFF2512	0.22	+1.0
2,534,385	+		GFF2512	0.22	-0.5
2,534,388	-		GFF2512	0.23	+0.8
2,534,390	+		GFF2512	0.23	+0.6
2,534,390	+		GFF2512	0.23	+0.6
2,534,391	+		GFF2512	0.23	-1.0
2,534,392	-		GFF2512	0.23	+0.1
2,534,393	-		GFF2512	0.23	+0.2
2,534,398	-		GFF2512	0.24	-1.0
2,534,398	-		GFF2512	0.24	-0.4
2,534,417	+		GFF2512	0.26	+0.1
2,534,417	+		GFF2512	0.26	+0.4
2,534,440	-		GFF2512	0.28	-0.5
2,534,440	-		GFF2512	0.28	-1.2
2,534,457	+		GFF2512	0.30	-1.7
2,534,465	-		GFF2512	0.31	-0.2
2,534,490	-		GFF2512	0.33	-0.0
2,534,503	+		GFF2512	0.34	-0.4
2,534,507	-		GFF2512	0.35	+1.1
2,534,511	-		GFF2512	0.35	+1.2
2,534,532	-		GFF2512	0.37	-0.2
2,534,543	+		GFF2512	0.38	+0.5
2,534,597	+		GFF2512	0.44	-0.2
2,534,597	+		GFF2512	0.44	-0.3
2,534,602	+		GFF2512	0.44	-0.1
2,534,605	+		GFF2512	0.45	-0.5
2,534,616	+		GFF2512	0.46	+0.8
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2,534,659	+		GFF2512	0.50	+0.0
2,534,669	+		GFF2512	0.51	-0.2
2,534,669	+		GFF2512	0.51	+0.4
2,534,669	+		GFF2512	0.51	+1.0
2,534,669	+		GFF2512	0.51	-1.0
2,534,676	+		GFF2512	0.52	-0.7
2,534,677	-		GFF2512	0.52	+1.5
2,534,677	-		GFF2512	0.52	+0.3
2,534,677	-		GFF2512	0.52	-0.4
2,534,677	-		GFF2512	0.52	-0.9
2,534,677	-		GFF2512	0.52	-2.3
2,534,678	+		GFF2512	0.52	-0.5
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2,534,686	+		GFF2512	0.53	+1.5
2,534,688	+		GFF2512	0.53	+0.9
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2,534,696	-		GFF2512	0.54	-1.3
2,534,709	+		GFF2512	0.55	+0.0
2,534,715	+		GFF2512	0.56	-0.8
2,534,715	+		GFF2512	0.56	-0.2
2,534,723	-		GFF2512	0.57	-1.5
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2,534,723	-		GFF2512	0.57	-0.9
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2,534,742	-		GFF2512	0.58	-0.1
2,534,748	+		GFF2512	0.59	-3.1
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2,534,778	-		GFF2512	0.62	+0.1
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2,534,837	+		GFF2512	0.68	+0.9
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2,535,025	-		GFF2512	0.87	-0.6
2,535,025	-		GFF2512	0.87	-0.2
2,535,057	+				+0.2
2,535,057	+				-1.7
2,535,065	-				-1.9
2,535,065	-				+0.4
2,535,068	+				-2.2
2,535,068	+				-0.4
2,535,083	+				-1.9
2,535,083	+				-0.6
2,535,083	+				-2.0
2,535,083	+				-1.5
2,535,083	+				+0.8
2,535,083	+				-1.9
2,535,086	-				+0.6
2,535,091	-				-1.2
2,535,091	-				+1.2
2,535,091	-				+0.6
2,535,091	-				-0.4
2,535,091	-				-1.7
2,535,091	-				+0.6
2,535,091	-				-0.9
2,535,093	-				+0.2
2,535,094	-				+1.6
2,535,103	+				-0.1
2,535,122	+				-0.9
2,535,127	+				+0.2
2,535,130	-				-0.5
2,535,137	+				+0.5
2,535,137	+				-0.3
2,535,146	+				+0.8
2,535,152	+				-1.5
2,535,153	+				-1.1
2,535,153	+				-0.5
2,535,155	-				+0.0
2,535,164	+				+0.3
2,535,164	+				-0.4