Strain Fitness in Sphingobium sp. HT1-2 around GFF2509

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,531,374	+		GFF2507	0.41	-0.2
2,531,379	+		GFF2507	0.42	-0.7
2,531,382	-		GFF2507	0.43	-0.7
2,531,384	+		GFF2507	0.43	+0.2
2,531,395	+		GFF2507	0.46	-0.3
2,531,395	+		GFF2507	0.46	-0.9
2,531,395	+		GFF2507	0.46	+1.1
2,531,403	-		GFF2507	0.48	+0.1
2,531,410	+		GFF2507	0.49	-0.2
2,531,410	+		GFF2507	0.49	+0.3
2,531,410	+		GFF2507	0.49	-1.6
2,531,410	+		GFF2507	0.49	-1.7
2,531,410	+		GFF2507	0.49	-0.4
2,531,413	-		GFF2507	0.50	-2.7
2,531,413	-		GFF2507	0.50	+1.0
2,531,418	-		GFF2507	0.51	-0.5
2,531,418	-		GFF2507	0.51	+0.6
2,531,418	-		GFF2507	0.51	-0.2
2,531,418	-		GFF2507	0.51	+0.5
2,531,418	-		GFF2507	0.51	-0.4
2,531,418	-		GFF2507	0.51	+0.6
2,531,442	+		GFF2507	0.57	+0.1
2,531,450	-		GFF2507	0.58	-2.4
2,531,466	+		GFF2507	0.62	-1.0
2,531,479	-		GFF2507	0.65	-0.5
2,531,492	+		GFF2507	0.68	-0.7
2,531,498	+		GFF2507	0.69	+0.2
2,531,510	-		GFF2507	0.72	+0.0
2,531,510	-		GFF2507	0.72	+0.5
2,531,510	-		GFF2507	0.72	-0.4
2,531,525	+		GFF2507	0.76	-0.5
2,531,537	+		GFF2507	0.78	+1.1
2,531,540	+		GFF2507	0.79	+0.3
2,531,540	+		GFF2507	0.79	+0.4
2,531,540	+		GFF2507	0.79	+0.6
2,531,540	+		GFF2507	0.79	-0.8
2,531,540	+		GFF2507	0.79	-2.7
2,531,540	+		GFF2507	0.79	-0.3
2,531,540	+		GFF2507	0.79	+0.6
2,531,540	+		GFF2507	0.79	-0.1
2,531,540	+		GFF2507	0.79	-0.2
2,531,540	+		GFF2507	0.79	-0.6
2,531,540	+		GFF2507	0.79	+0.1
2,531,540	+		GFF2507	0.79	+1.0
2,531,540	+		GFF2507	0.79	-0.1
2,531,540	+		GFF2507	0.79	-0.1
2,531,540	+		GFF2507	0.79	+2.0
2,531,540	+		GFF2507	0.79	+0.1
2,531,540	+		GFF2507	0.79	-0.5
2,531,540	+		GFF2507	0.79	+0.4
2,531,540	+		GFF2507	0.79	+0.2
2,531,545	+		GFF2507	0.80	-0.2
2,531,545	+		GFF2507	0.80	-0.9
2,531,545	+		GFF2507	0.80	-2.0
2,531,545	+		GFF2507	0.80	-0.8
2,531,545	+		GFF2507	0.80	-0.4
2,531,545	+		GFF2507	0.80	-0.3
2,531,548	-		GFF2507	0.81	-1.2
2,531,548	-		GFF2507	0.81	-0.9
2,531,548	-		GFF2507	0.81	-0.6
2,531,548	-		GFF2507	0.81	-0.0
2,531,548	-		GFF2507	0.81	-0.6
2,531,548	-		GFF2507	0.81	-1.4
2,531,548	-		GFF2507	0.81	-0.4
2,531,548	-		GFF2507	0.81	+0.4
2,531,548	-		GFF2507	0.81	-0.8
2,531,548	-		GFF2507	0.81	+0.7
2,531,548	-		GFF2507	0.81	+0.2
2,531,553	-		GFF2507	0.82	+0.6
2,531,553	-		GFF2507	0.82	-1.5
2,531,553	-		GFF2507	0.82	-0.1
2,531,553	-		GFF2507	0.82	-1.7
2,531,553	-		GFF2507	0.82	-2.1
2,531,553	-		GFF2507	0.82	+0.5
2,531,553	-		GFF2507	0.82	+0.2
2,531,553	-		GFF2507	0.82	+1.4
2,531,553	-		GFF2507	0.82	-0.0
2,531,553	-		GFF2507	0.82	+0.0
2,531,555	-		GFF2507	0.82	-2.7
2,531,563	-		GFF2507	0.84	-0.8
2,531,565	+		GFF2507	0.85	-0.9
2,531,565	+		GFF2507	0.85	-0.8
2,531,565	+		GFF2507	0.85	+0.6
2,531,565	+		GFF2507	0.85	+0.7
2,531,565	+		GFF2507	0.85	-0.7
2,531,565	+		GFF2507	0.85	+1.7
2,531,565	+		GFF2507	0.85	-1.6
2,531,568	-		GFF2507	0.85	+0.1
2,531,573	-		GFF2507	0.87	+0.9
2,531,577	+		GFF2507	0.87	-0.9
2,531,585	-		GFF2507	0.89	+1.0
2,531,585	-		GFF2507	0.89	+1.7
2,531,587	+		GFF2507	0.90	-0.7
2,531,587	+		GFF2507	0.90	+0.2
2,531,604	+				-0.5
2,531,612	-				-0.2
2,531,622	-				+0.1
2,531,629	+				+1.0
2,531,637	-				-0.5
2,531,637	-				-0.4
2,531,643	+				-1.6
2,531,643	+				+0.0
2,531,688	+				+0.4
2,531,688	+				-0.6
2,531,688	+				-2.6
2,531,688	+				-0.3
2,531,688	+				-0.4
2,531,688	+				-0.7
2,531,688	+				+0.5
2,531,688	+				+0.7
2,531,688	+				-0.0
2,531,688	+				+0.0
2,531,696	-				+0.3
2,531,696	-				-0.4
2,531,696	-				-1.5
2,531,696	-				-0.8
2,531,698	+				-0.4
2,531,706	-				-1.8
2,531,706	-				+0.2
2,531,716	-				-1.7
2,531,754	+				+0.5
2,531,784	-				+0.4
2,531,785	+				+0.1
2,531,785	+				+0.1
2,531,785	+				+0.1
2,531,785	+				+0.2
2,531,785	+				+0.8
2,531,785	+				+0.2
2,531,785	+				-1.6
2,531,785	+				+1.0
2,531,785	+				+0.7
2,531,785	+				-1.7
2,531,785	+				-1.0
2,531,785	+				-1.2
2,531,785	+				+1.7
2,531,793	-				-1.4
2,531,793	-				+0.2
2,531,793	-				-1.0
2,531,793	-				+0.3
2,531,793	-				+0.1
2,531,793	-				-1.1
2,531,793	-				+0.6
2,531,793	-				+0.3
2,531,793	-				+0.4
2,531,793	-				-1.4
2,531,793	-				-1.4
2,531,793	-				+0.1
2,531,793	-				+0.6
2,531,793	-				+1.0
2,531,793	-				-0.4
2,531,793	-				+0.4
2,531,800	+				+0.0
2,531,804	+				-0.3
2,531,804	+				+1.5
2,531,805	+				+1.6
2,531,805	+				+0.9
2,531,812	-		GFF2508	0.10	-1.2
2,531,812	-		GFF2508	0.10	-2.5
2,531,812	-		GFF2508	0.10	+0.7
2,531,812	-		GFF2508	0.10	+0.5
2,531,816	+		GFF2508	0.11	+0.8
2,531,817	-		GFF2508	0.11	-1.2
2,531,824	-		GFF2508	0.13	-0.3
2,531,855	+		GFF2508	0.18	-0.2
2,531,863	-		GFF2508	0.20	+0.0
2,531,867	+		GFF2508	0.21	-0.7
2,531,867	+		GFF2508	0.21	-0.7
2,531,867	+		GFF2508	0.21	+1.3
2,531,867	+		GFF2508	0.21	-1.1
2,531,868	-		GFF2508	0.21	+0.8
2,531,872	+		GFF2508	0.22	-0.4
2,531,872	+		GFF2508	0.22	+1.0
2,531,872	+		GFF2508	0.22	+0.3
2,531,875	-		GFF2508	0.22	-0.8
2,531,875	-		GFF2508	0.22	+0.6
2,531,875	-		GFF2508	0.22	+0.2
2,531,880	-		GFF2508	0.23	+0.5
2,531,880	-		GFF2508	0.23	+0.1
2,531,884	+		GFF2508	0.24	-1.8
2,531,890	+		GFF2508	0.25	-0.7
2,531,892	-		GFF2508	0.26	-0.2
2,531,893	-		GFF2508	0.26	+0.8
2,531,899	-		GFF2508	0.27	-0.2
2,531,931	-		GFF2508	0.33	-0.4
2,531,934	-		GFF2508	0.34	-1.5
2,531,957	+		GFF2508	0.38	-0.9
2,531,972	+		GFF2508	0.41	-1.4
2,531,972	+		GFF2508	0.41	-0.1
2,531,972	+		GFF2508	0.41	-0.1
2,531,972	+		GFF2508	0.41	-1.3
2,531,972	+		GFF2508	0.41	+0.1
2,531,980	-		GFF2508	0.42	+1.2
2,531,980	-		GFF2508	0.42	-0.1
2,531,980	-		GFF2508	0.42	+0.2
2,531,980	-		GFF2508	0.42	-0.8
2,531,980	-		GFF2508	0.42	+0.4
2,531,980	-		GFF2508	0.42	-1.0
2,531,984	+		GFF2508	0.43	-1.3
2,531,984	+		GFF2508	0.43	-0.4
2,532,033	-		GFF2508	0.52	-1.2
2,532,033	-		GFF2508	0.52	+0.4
2,532,033	-		GFF2508	0.52	+0.1
2,532,044	-		GFF2508	0.54	-1.2
2,532,051	-		GFF2508	0.56	-1.0
2,532,067	+		GFF2508	0.59	+0.6
2,532,106	-		GFF2508	0.66	+0.1
2,532,132	-		GFF2508	0.71	+1.0
2,532,146	+		GFF2508	0.74	-0.9
2,532,150	+		GFF2508	0.75	-2.9
2,532,150	+		GFF2508	0.75	-1.2
2,532,154	-		GFF2508	0.75	+0.1
2,532,159	-		GFF2508	0.76	+0.6
2,532,159	-		GFF2508	0.76	-1.6
2,532,166	+		GFF2508	0.78	+1.0
2,532,166	+		GFF2508	0.78	-2.2
2,532,166	+		GFF2508	0.78	-0.9
2,532,169	-		GFF2508	0.78	-0.4
2,532,170	+		GFF2508	0.78	+1.0
2,532,203	-		GFF2508	0.85	-1.1
2,532,212	+		GFF2508	0.86	+0.7
2,532,235	+				-0.5
2,532,238	-				-1.5
2,532,243	-				+0.9
2,532,253	-				+0.9
2,532,255	+				+0.1
2,532,286	+				+1.4
2,532,286	+				-1.2
2,532,286	+				-0.2
2,532,294	-				-1.4
2,532,294	-				-1.0
2,532,294	-				+0.6
2,532,294	-				+0.8
2,532,294	-				-0.4
2,532,294	-				+1.0
2,532,294	-				-0.8
2,532,294	-				-0.5
2,532,295	-				-0.6
2,532,345	+				-1.8
2,532,345	+				+1.0
2,532,353	-				+0.9
2,532,353	-				+0.9
2,532,356	+				-0.8
2,532,356	+				+0.8
2,532,356	+				-0.7
2,532,364	-				-1.9
2,532,365	+				+0.7
2,532,373	-				-0.4
2,532,379	+				-0.9
2,532,379	-				+0.8
2,532,428	+		GFF2509	0.47	+0.8
2,532,429	+		GFF2509	0.47	+0.1
2,532,442	+		GFF2509	0.58	-0.6
2,532,460	+		GFF2509	0.73	+0.4
2,532,471	+		GFF2509	0.82	-0.8
2,532,471	+		GFF2509	0.82	+0.1
2,532,471	+		GFF2509	0.82	-1.2
2,532,471	+		GFF2509	0.82	-0.8
2,532,471	+		GFF2509	0.82	-1.8
2,532,471	+		GFF2509	0.82	-0.4
2,532,479	-		GFF2509	0.89	+1.5
2,532,479	-		GFF2509	0.89	-0.6
2,532,479	-		GFF2509	0.89	-1.5
2,532,479	-		GFF2509	0.89	-0.4
2,532,479	-		GFF2509	0.89	+0.4
2,532,479	-		GFF2509	0.89	-0.0
2,532,488	+				+1.4
2,532,491	-				+1.1
2,532,493	+				+1.7
2,532,494	+				-0.6
2,532,530	-				-1.5
2,532,530	-				-1.0
2,532,532	-				+1.7
2,532,539	+				-1.4
2,532,547	-				-0.2
2,532,547	-				+0.4
2,532,552	-				-1.6
2,532,552	-				+0.0
2,532,552	-				-1.6
2,532,557	-				-1.3
2,532,561	+				-1.2
2,532,566	+				-0.6
2,532,566	+				-0.3
2,532,569	-				+0.2
2,532,569	-				-0.0
2,532,582	+				-0.2
2,532,614	+		GFF2510	0.10	-0.7
2,532,627	-		GFF2510	0.12	+0.3
2,532,632	-		GFF2510	0.13	+0.4
2,532,651	+		GFF2510	0.15	+0.3
2,532,659	-		GFF2510	0.17	+0.9
2,532,677	+		GFF2510	0.19	+0.7
2,532,685	-		GFF2510	0.20	-0.9
2,532,685	-		GFF2510	0.20	+0.7
2,532,718	+		GFF2510	0.25	+0.5
2,532,723	+		GFF2510	0.26	+0.5
2,532,731	-		GFF2510	0.27	-1.9
2,532,731	-		GFF2510	0.27	-1.6
2,532,731	-		GFF2510	0.27	-1.0
2,532,748	+		GFF2510	0.30	+0.3
2,532,748	+		GFF2510	0.30	+0.6
2,532,751	-		GFF2510	0.30	+0.0
2,532,756	-		GFF2510	0.31	-1.5
2,532,770	-		GFF2510	0.33	-0.1
2,532,770	-		GFF2510	0.33	-1.1
2,532,810	+		GFF2510	0.39	-0.5
2,532,811	+		GFF2510	0.39	-1.1
2,532,824	+		GFF2510	0.41	-2.4
2,532,824	+		GFF2510	0.41	+1.6
2,532,832	+		GFF2510	0.42	+0.0
2,532,832	-		GFF2510	0.42	-0.6
2,532,837	-		GFF2510	0.43	-1.5
2,532,861	+		GFF2510	0.46	-0.5
2,532,861	+		GFF2510	0.46	-1.2
2,532,866	+		GFF2510	0.47	-0.5
2,532,871	+		GFF2510	0.47	+0.7
2,532,871	+		GFF2510	0.47	+1.0
2,532,871	+		GFF2510	0.47	-0.9
2,532,874	-		GFF2510	0.48	+0.6
2,532,884	+		GFF2510	0.49	-1.6
2,532,885	+		GFF2510	0.49	+1.1
2,532,890	+		GFF2510	0.50	-1.2
2,532,891	+		GFF2510	0.50	-1.4
2,532,897	-		GFF2510	0.51	-0.2
2,532,897	-		GFF2510	0.51	-0.9
2,532,898	-		GFF2510	0.51	-3.1
2,532,954	-		GFF2510	0.60	-0.8
2,532,960	+		GFF2510	0.60	+0.6
2,532,960	+		GFF2510	0.60	+1.3
2,532,960	+		GFF2510	0.60	-0.2
2,532,965	+		GFF2510	0.61	-2.1
2,532,968	-		GFF2510	0.62	-1.2
2,532,968	-		GFF2510	0.62	+0.2
2,532,968	-		GFF2510	0.62	+0.5
2,532,968	-		GFF2510	0.62	+0.8
2,532,968	-		GFF2510	0.62	-1.0
2,532,973	-		GFF2510	0.62	-0.2
2,532,980	+		GFF2510	0.63	+0.5
2,532,985	+		GFF2510	0.64	-1.9
2,532,993	-		GFF2510	0.65	-1.9
2,532,994	-		GFF2510	0.65	-0.7
2,533,010	+		GFF2510	0.68	-0.4
2,533,016	-		GFF2510	0.69	+0.6
2,533,018	-		GFF2510	0.69	-0.8
2,533,037	+		GFF2510	0.72	+0.9
2,533,050	+		GFF2510	0.74	-1.7
2,533,063	+		GFF2510	0.75	-0.7
2,533,063	+		GFF2510	0.75	-2.6
2,533,063	+		GFF2510	0.75	-0.1
2,533,063	+		GFF2510	0.75	-1.6
2,533,071	-		GFF2510	0.77	-0.9
2,533,071	-		GFF2510	0.77	+0.1
2,533,071	-		GFF2510	0.77	+0.0
2,533,071	-		GFF2510	0.77	-2.8
2,533,071	-		GFF2510	0.77	-1.8
2,533,071	-		GFF2510	0.77	+0.6
2,533,071	-		GFF2510	0.77	+0.3
2,533,095	+		GFF2510	0.80	-0.4
2,533,095	+		GFF2510	0.80	+0.1
2,533,095	+		GFF2510	0.80	-0.2
2,533,095	+		GFF2510	0.80	-0.2
2,533,095	+		GFF2510	0.80	+0.5
2,533,095	+		GFF2510	0.80	+0.2
2,533,103	-		GFF2510	0.81	-1.1
2,533,103	-		GFF2510	0.81	+0.7
2,533,103	-		GFF2510	0.81	+0.0
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