Strain Fitness in Sphingobium sp. HT1-2 around GFF2417

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,434,488	+				+0.2
2,434,488	+				-0.4
2,434,488	+				+0.4
2,434,488	+				+0.4
2,434,501	-				+0.8
2,434,521	+				-0.9
2,434,521	+				-0.4
2,434,521	+				-1.2
2,434,521	+				-0.9
2,434,529	-				+0.4
2,434,529	-				-2.4
2,434,547	+		GFF2416	0.11	-2.5
2,434,550	+		GFF2416	0.11	-1.0
2,434,559	+		GFF2416	0.12	-1.4
2,434,565	+		GFF2416	0.13	+1.2
2,434,600	-		GFF2416	0.16	-1.6
2,434,618	+		GFF2416	0.18	-1.2
2,434,674	-		GFF2416	0.24	+0.2
2,434,674	-		GFF2416	0.24	-0.7
2,434,759	-		GFF2416	0.33	+0.1
2,434,924	+		GFF2416	0.51	+0.8
2,434,939	+		GFF2416	0.53	-1.9
2,434,939	+		GFF2416	0.53	-1.2
2,434,974	-		GFF2416	0.57	-1.4
2,434,982	+		GFF2416	0.57	+0.3
2,435,046	-		GFF2416	0.64	-1.5
2,435,061	+		GFF2416	0.66	-1.5
2,435,069	-		GFF2416	0.67	-1.9
2,435,069	-		GFF2416	0.67	+0.5
2,435,069	-		GFF2416	0.67	-1.2
2,435,093	+		GFF2416	0.69	-0.3
2,435,101	-		GFF2416	0.70	+0.1
2,435,101	-		GFF2416	0.70	-2.4
2,435,152	-		GFF2416	0.76	-1.4
2,435,152	-		GFF2416	0.76	-0.4
2,435,183	+		GFF2416	0.79	-0.6
2,435,226	+		GFF2416	0.84	-0.6
2,435,276	+		GFF2416	0.89	-0.6
2,435,385	+				+0.6
2,435,390	+				-0.3
2,435,390	+				-0.9
2,435,390	+				+0.5
2,435,390	+				-1.5
2,435,390	+				+1.9
2,435,390	+				-0.4
2,435,390	+				+0.5
2,435,390	+				+0.8
2,435,390	+				-1.4
2,435,390	+				+0.2
2,435,390	+				+0.3
2,435,390	+				+0.2
2,435,390	+				+0.5
2,435,390	+				-0.3
2,435,390	+				+0.3
2,435,390	+				-1.5
2,435,390	+				-0.5
2,435,390	+				+0.9
2,435,390	+				-0.9
2,435,390	+				+0.1
2,435,390	+				-0.9
2,435,390	+				-0.2
2,435,395	+				-1.3
2,435,398	-				+0.8
2,435,398	-				-0.9
2,435,398	-				-2.0
2,435,398	-				-2.5
2,435,398	-				-0.0
2,435,398	-				+1.1
2,435,398	-				+0.6
2,435,398	-				+0.9
2,435,398	-				-0.0
2,435,398	-				-0.1
2,435,398	-				-1.2
2,435,398	-				+0.0
2,435,398	-				+1.2
2,435,403	-				+0.5
2,435,404	+				-0.2
2,435,412	-				-1.6
2,435,412	-				-1.4
2,435,412	-				-0.3
2,435,412	-				-0.2
2,435,412	-				-0.9
2,435,412	-				+0.6
2,435,412	-				+0.4
2,435,435	+				-0.4
2,435,441	-				-1.6
2,435,493	-				+1.0
2,435,521	+				+0.2
2,435,533	+				+1.5
2,435,546	-				+0.7
2,435,546	-				-1.1
2,435,548	-				-2.4
2,435,612	-		GFF2417	0.12	+0.4
2,435,618	+		GFF2417	0.12	-0.1
2,435,618	+		GFF2417	0.12	-0.8
2,435,618	+		GFF2417	0.12	-0.1
2,435,618	+		GFF2417	0.12	+0.8
2,435,618	+		GFF2417	0.12	-0.5
2,435,618	-		GFF2417	0.12	-0.7
2,435,618	-		GFF2417	0.12	-1.3
2,435,626	-		GFF2417	0.13	+1.1
2,435,626	-		GFF2417	0.13	-0.3
2,435,626	-		GFF2417	0.13	+0.1
2,435,690	+		GFF2417	0.16	-0.8
2,435,749	+		GFF2417	0.20	-1.9
2,435,749	+		GFF2417	0.20	+0.5
2,435,757	-		GFF2417	0.20	-0.9
2,435,757	-		GFF2417	0.20	-1.3
2,435,789	+		GFF2417	0.22	-0.1
2,435,818	-		GFF2417	0.23	+0.9
2,435,829	+		GFF2417	0.24	-0.1
2,435,829	+		GFF2417	0.24	-0.2
2,435,829	+		GFF2417	0.24	-0.1
2,435,837	-		GFF2417	0.24	-1.2
2,435,837	-		GFF2417	0.24	-0.0
2,435,866	+		GFF2417	0.26	-0.9
2,435,874	-		GFF2417	0.26	-1.7
2,435,917	+		GFF2417	0.29	-1.4
2,435,935	+		GFF2417	0.30	-0.1
2,435,958	-		GFF2417	0.31	+0.3
2,435,993	-		GFF2417	0.33	-0.4
2,436,000	-		GFF2417	0.33	+0.6
2,436,002	+		GFF2417	0.33	-0.8
2,436,002	+		GFF2417	0.33	+0.1
2,436,032	+		GFF2417	0.35	-1.7
2,436,058	-		GFF2417	0.36	-1.2
2,436,063	+		GFF2417	0.37	+0.7
2,436,092	+		GFF2417	0.38	+0.4
2,436,097	-		GFF2417	0.39	-1.8
2,436,102	-		GFF2417	0.39	+0.2
2,436,112	-		GFF2417	0.39	-1.4
2,436,118	-		GFF2417	0.40	+0.1
2,436,142	-		GFF2417	0.41	+1.2
2,436,147	-		GFF2417	0.41	+0.2
2,436,152	-		GFF2417	0.42	+0.1
2,436,197	-		GFF2417	0.44	+1.0
2,436,206	+		GFF2417	0.44	+0.6
2,436,224	+		GFF2417	0.45	-2.3
2,436,225	-		GFF2417	0.46	-0.1
2,436,227	-		GFF2417	0.46	-1.2
2,436,233	+		GFF2417	0.46	-1.1
2,436,233	+		GFF2417	0.46	+0.1
2,436,270	-		GFF2417	0.48	-0.2
2,436,294	+		GFF2417	0.49	-0.4
2,436,296	-		GFF2417	0.49	-0.8
2,436,348	+		GFF2417	0.52	-0.3
2,436,375	+		GFF2417	0.54	+0.5
2,436,381	+		GFF2417	0.54	-1.5
2,436,401	+		GFF2417	0.55	-1.6
2,436,401	+		GFF2417	0.55	-0.6
2,436,401	+		GFF2417	0.55	-1.2
2,436,401	+		GFF2417	0.55	+0.2
2,436,401	+		GFF2417	0.55	-0.2
2,436,401	+		GFF2417	0.55	+0.2
2,436,409	-		GFF2417	0.56	-0.4
2,436,409	-		GFF2417	0.56	-0.2
2,436,419	-		GFF2417	0.56	-0.2
2,436,419	-		GFF2417	0.56	+1.2
2,436,423	+		GFF2417	0.56	+0.4
2,436,428	+		GFF2417	0.57	-1.1
2,436,431	-		GFF2417	0.57	+1.2
2,436,431	-		GFF2417	0.57	+0.5
2,436,431	-		GFF2417	0.57	-1.9
2,436,431	-		GFF2417	0.57	+1.2
2,436,431	-		GFF2417	0.57	-2.2
2,436,434	+		GFF2417	0.57	-1.6
2,436,446	+		GFF2417	0.58	+0.4
2,436,446	+		GFF2417	0.58	-0.5
2,436,454	-		GFF2417	0.58	+0.2
2,436,454	-		GFF2417	0.58	+0.1
2,436,456	+		GFF2417	0.58	-0.5
2,436,456	+		GFF2417	0.58	-0.8
2,436,456	+		GFF2417	0.58	+0.0
2,436,464	-		GFF2417	0.59	-1.7
2,436,464	-		GFF2417	0.59	+0.0
2,436,464	-		GFF2417	0.59	-2.0
2,436,464	-		GFF2417	0.59	+1.2
2,436,464	-		GFF2417	0.59	+0.3
2,436,464	-		GFF2417	0.59	+0.3
2,436,464	-		GFF2417	0.59	+0.2
2,436,469	-		GFF2417	0.59	+0.6
2,436,469	-		GFF2417	0.59	-2.1
2,436,487	+		GFF2417	0.60	-3.1
2,436,495	-		GFF2417	0.60	+1.1
2,436,523	-		GFF2417	0.62	+1.5
2,436,562	+		GFF2417	0.64	-1.7
2,436,562	+		GFF2417	0.64	-1.5
2,436,562	+		GFF2417	0.64	+0.6
2,436,565	-		GFF2417	0.64	-0.5
2,436,570	-		GFF2417	0.64	+0.4
2,436,570	-		GFF2417	0.64	-0.8
2,436,570	-		GFF2417	0.64	+1.4
2,436,599	-		GFF2417	0.66	+0.2
2,436,599	-		GFF2417	0.66	-0.2
2,436,640	+		GFF2417	0.68	-0.4
2,436,657	+		GFF2417	0.69	+0.8
2,436,697	-		GFF2417	0.71	+0.8
2,436,714	+		GFF2417	0.72	-0.6
2,436,714	+		GFF2417	0.72	+1.1
2,436,719	+		GFF2417	0.73	+0.6
2,436,724	+		GFF2417	0.73	-1.2
2,436,726	+		GFF2417	0.73	+0.6
2,436,727	-		GFF2417	0.73	+1.2
2,436,727	-		GFF2417	0.73	-0.4
2,436,727	-		GFF2417	0.73	-1.1
2,436,745	+		GFF2417	0.74	-0.0
2,436,749	-		GFF2417	0.74	+0.2
2,436,771	+		GFF2417	0.75	+0.4
2,436,771	+		GFF2417	0.75	-1.8
2,436,778	+		GFF2417	0.76	-2.6
2,436,779	-		GFF2417	0.76	-0.5
2,436,808	+		GFF2417	0.77	-0.7
2,436,816	-		GFF2417	0.78	+0.5
2,436,834	+		GFF2417	0.79	-0.4
2,436,834	+		GFF2417	0.79	+1.1
2,436,840	-		GFF2417	0.79	-1.0
2,436,851	+		GFF2417	0.80	-1.4
2,436,859	-		GFF2417	0.80	+0.8
2,436,877	-		GFF2417	0.81	+0.0
2,436,886	-		GFF2417	0.82	-1.5
2,436,893	+		GFF2417	0.82	-0.3
2,436,901	-		GFF2417	0.82	-0.9
2,436,949	-		GFF2417	0.85	-0.9
2,436,956	-		GFF2417	0.85	+0.1
2,436,961	+		GFF2417	0.86	+1.7
2,436,961	+		GFF2417	0.86	+1.2
2,436,964	-		GFF2417	0.86	+1.3
2,437,019	+		GFF2417	0.89	-0.8
2,437,033	+		GFF2417	0.90	-0.5
2,437,034	+		GFF2417	0.90	+0.8
2,437,087	-				-0.6
2,437,171	-				-2.2
2,437,178	+				+1.0
2,437,178	+				+0.2
2,437,181	-				-0.2
2,437,186	-				+0.2
2,437,186	-				-0.7
2,437,202	+				-2.7
2,437,210	-				-1.2
2,437,246	+		GFF2418	0.10	+0.5
2,437,280	+		GFF2418	0.28	+0.0
2,437,280	+		GFF2418	0.28	+1.0
2,437,288	-		GFF2418	0.33	-0.1
2,437,316	+		GFF2418	0.48	-0.9
2,437,395	-				-0.7
2,437,399	+				-0.5
2,437,426	-				-1.2
2,437,437	-				-0.2
2,437,455	+				+0.4
2,437,485	+				-2.5
2,437,490	+				-1.2
2,437,490	+				-1.9
2,437,490	+				-0.9
2,437,490	+				+0.5
2,437,490	+				+0.6
2,437,490	+				+0.7
2,437,490	+				+0.3
2,437,490	+				-1.9
2,437,498	-				+0.2
2,437,498	-				-1.3
2,437,498	-				-1.1
2,437,498	-				-0.9
2,437,498	-				-0.9
2,437,498	-				-1.2
2,437,498	-				-0.2
2,437,533	+				-0.3
2,437,533	+				+0.2
2,437,533	+				+0.3
2,437,533	+				+0.2
2,437,621	+		GFF2419	0.21	-0.2
2,437,817	+		GFF2419	0.56	-1.4
2,438,049	+				-0.6
2,438,049	+				-1.1
2,438,049	+				-0.3
2,438,049	+				-0.9
2,438,049	+				-0.4
2,438,057	-				-2.4
2,438,057	-				-0.8
2,438,057	-				-1.9
2,438,057	-				-1.8
2,438,057	-				-1.9
2,438,057	-				-2.2
2,438,062	-				-2.6