Strain Fitness in Sphingobium sp. HT1-2 around GFF2404

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,422,345	+				+0.3
2,422,345	+				+0.3
2,422,385	-				+0.9
2,422,396	-				-1.4
2,422,405	+		GFF2402	0.12	+0.3
2,422,416	+		GFF2402	0.15	+1.1
2,422,424	-		GFF2402	0.17	+0.5
2,422,424	-		GFF2402	0.17	-0.1
2,422,438	+		GFF2402	0.20	-0.9
2,422,438	-		GFF2402	0.20	+0.4
2,422,446	-		GFF2402	0.22	+0.1
2,422,463	+		GFF2402	0.27	-0.1
2,422,464	-		GFF2402	0.27	+0.1
2,422,466	+		GFF2402	0.28	+0.2
2,422,484	-		GFF2402	0.32	-1.5
2,422,517	-		GFF2402	0.41	-0.7
2,422,527	+		GFF2402	0.43	+0.2
2,422,539	+		GFF2402	0.47	-0.2
2,422,545	-		GFF2402	0.48	+1.7
2,422,547	-		GFF2402	0.49	-1.5
2,422,548	-		GFF2402	0.49	+1.0
2,422,551	+		GFF2402	0.50	-0.4
2,422,551	+		GFF2402	0.50	-0.8
2,422,559	-		GFF2402	0.52	+0.2
2,422,559	-		GFF2402	0.52	+0.2
2,422,561	+		GFF2402	0.52	+0.9
2,422,571	-		GFF2402	0.55	-0.4
2,422,591	-		GFF2402	0.60	+0.2
2,422,598	-		GFF2402	0.62	+0.7
2,422,609	+		GFF2402	0.65	-0.0
2,422,619	+		GFF2402	0.67	+1.6
2,422,621	+		GFF2402	0.68	+0.5
2,422,623	+		GFF2402	0.68	-0.7
2,422,623	+		GFF2402	0.68	-0.6
2,422,631	-		GFF2402	0.71	-1.3
2,422,637	+		GFF2402	0.72	+0.6
2,422,641	-		GFF2402	0.73	-1.7
2,422,647	+		GFF2402	0.75	+0.6
2,422,647	+		GFF2402	0.75	+0.4
2,422,647	+		GFF2402	0.75	+0.1
2,422,650	-		GFF2402	0.76	-1.0
2,422,655	-		GFF2402	0.77	+1.7
2,422,655	-		GFF2402	0.77	-0.7
2,422,655	-		GFF2402	0.77	-0.8
2,422,655	-		GFF2402	0.77	-0.2
2,422,655	-		GFF2402	0.77	-1.2
2,422,655	-		GFF2402	0.77	-0.8
2,422,674	+		GFF2402	0.82	-1.2
2,422,674	+		GFF2402	0.82	-1.0
2,422,674	+		GFF2402	0.82	-0.0
2,422,674	+		GFF2402	0.82	-0.4
2,422,675	-		GFF2402	0.82	+0.2
2,422,675	-		GFF2402	0.82	+0.1
2,422,682	-		GFF2402	0.84	-1.0
2,422,682	-		GFF2402	0.84	+0.5
2,422,682	-		GFF2402	0.84	-0.7
2,422,682	-		GFF2402	0.84	-0.3
2,422,682	-		GFF2402	0.84	-0.9
2,422,682	-		GFF2402	0.84	-0.4
2,422,700	+		GFF2402	0.89	-0.2
2,422,708	-				-0.2
2,422,718	+				-0.9
2,422,723	+				-0.5
2,422,723	+				+1.4
2,422,723	+				+0.1
2,422,728	+				+0.1
2,422,728	+				-0.7
2,422,728	+				+1.4
2,422,736	-				-1.9
2,422,736	-				-1.1
2,422,736	-				-1.6
2,422,740	-				+1.2
2,422,745	-				+0.3
2,422,745	-				+0.1
2,422,824	+				-0.1
2,422,848	+				-0.2
2,422,849	+				+0.1
2,422,849	+				-1.6
2,422,849	+				+0.5
2,422,857	-				-0.2
2,422,857	-				-1.4
2,422,857	-				+1.0
2,422,858	+				+0.1
2,422,858	-				-0.9
2,422,859	+				-0.3
2,422,873	+				+0.6
2,422,874	+				-0.0
2,422,879	+				-0.3
2,422,884	+				+0.9
2,422,887	-				-1.5
2,422,895	+				-2.2
2,422,895	+				-1.7
2,422,895	+				+0.1
2,422,895	+				+0.4
2,422,895	+				-0.4
2,422,903	-				-0.3
2,422,912	-				-0.9
2,422,927	-				-1.2
2,422,927	-				+0.5
2,422,927	-				+0.2
2,422,927	-				-1.9
2,422,940	-				+0.2
2,422,945	-				-1.7
2,422,952	+				+0.3
2,422,952	+				-1.2
2,422,954	-				-1.1
2,422,960	-		GFF2403	0.11	+0.5
2,422,960	-		GFF2403	0.11	-0.7
2,422,960	-		GFF2403	0.11	+0.3
2,422,960	-		GFF2403	0.11	+0.3
2,422,960	-		GFF2403	0.11	-0.0
2,422,977	-		GFF2403	0.16	+0.9
2,423,026	-		GFF2403	0.31	-0.4
2,423,027	+		GFF2403	0.31	-0.6
2,423,048	-		GFF2403	0.38	-1.2
2,423,058	+		GFF2403	0.40	-1.3
2,423,066	-		GFF2403	0.43	-1.3
2,423,084	+		GFF2403	0.48	+0.1
2,423,092	-		GFF2403	0.51	+0.8
2,423,118	+		GFF2403	0.58	-0.1
2,423,128	+		GFF2403	0.61	-1.1
2,423,139	+		GFF2403	0.65	-0.2
2,423,139	+		GFF2403	0.65	-0.6
2,423,147	+		GFF2403	0.67	-0.3
2,423,147	+		GFF2403	0.67	-1.7
2,423,147	+		GFF2403	0.67	-1.4
2,423,147	+		GFF2403	0.67	-1.5
2,423,147	+		GFF2403	0.67	+0.9
2,423,147	+		GFF2403	0.67	-0.7
2,423,147	+		GFF2403	0.67	-0.9
2,423,152	-		GFF2403	0.68	-0.6
2,423,155	-		GFF2403	0.69	+0.3
2,423,155	-		GFF2403	0.69	+1.0
2,423,155	-		GFF2403	0.69	-0.0
2,423,155	-		GFF2403	0.69	+0.3
2,423,155	-		GFF2403	0.69	+0.3
2,423,155	-		GFF2403	0.69	-0.6
2,423,155	-		GFF2403	0.69	-0.7
2,423,155	-		GFF2403	0.69	-1.1
2,423,162	+		GFF2403	0.71	+0.3
2,423,162	+		GFF2403	0.71	+0.2
2,423,162	+		GFF2403	0.71	-0.0
2,423,170	-		GFF2403	0.74	+1.3
2,423,170	-		GFF2403	0.74	+0.3
2,423,185	-		GFF2403	0.78	+0.6
2,423,250	+				-2.2
2,423,253	+				-0.3
2,423,261	+				-1.4
2,423,275	+				-0.4
2,423,282	-				-1.1
2,423,283	-				+0.6
2,423,283	-				+0.2
2,423,283	-				-0.7
2,423,291	+				+0.1
2,423,315	-				-1.9
2,423,334	+				-2.0
2,423,352	+				-1.6
2,423,352	+				-1.3
2,423,352	+				-1.4
2,423,352	+				-1.0
2,423,352	+				-1.8
2,423,355	-				-0.7
2,423,360	-				-0.4
2,423,360	-				-1.7
2,423,360	-				-2.4
2,423,393	-				-1.1
2,423,393	-				-1.1
2,423,400	+				-1.2
2,423,408	-				-2.5
2,423,408	-				-2.6
2,423,473	+				-1.8
2,423,473	+				-1.5
2,423,473	+				-1.9
2,423,480	+				-1.9
2,423,481	-				-2.0
2,423,488	-				-0.9
2,423,546	-				-1.2
2,423,621	+		GFF2404	0.13	-0.9
2,423,625	-		GFF2404	0.13	-2.1
2,423,651	-		GFF2404	0.14	-2.1
2,423,688	+		GFF2404	0.16	-1.5
2,423,696	-		GFF2404	0.16	-1.7
2,423,714	+		GFF2404	0.17	-2.0
2,423,720	+		GFF2404	0.18	-1.9
2,423,720	+		GFF2404	0.18	-2.1
2,423,720	+		GFF2404	0.18	-0.5
2,423,727	+		GFF2404	0.18	+0.3
2,423,728	-		GFF2404	0.18	-1.2
2,423,730	-		GFF2404	0.18	-1.2
2,423,751	-		GFF2404	0.19	-0.2
2,423,753	+		GFF2404	0.19	-2.2
2,423,753	+		GFF2404	0.19	-0.0
2,423,758	+		GFF2404	0.19	-1.6
2,423,766	+		GFF2404	0.20	-0.5
2,423,771	+		GFF2404	0.20	-0.6
2,423,771	+		GFF2404	0.20	-0.2
2,423,771	+		GFF2404	0.20	+0.3
2,423,774	-		GFF2404	0.20	-0.4
2,423,779	-		GFF2404	0.20	-2.2
2,423,787	-		GFF2404	0.21	-1.8
2,423,792	-		GFF2404	0.21	+0.4
2,423,820	-		GFF2404	0.22	-2.6
2,423,841	+		GFF2404	0.23	-1.9
2,423,854	-		GFF2404	0.24	-1.1
2,423,864	-		GFF2404	0.24	-2.4
2,423,866	+		GFF2404	0.24	-1.2
2,423,871	+		GFF2404	0.25	-2.4
2,423,871	+		GFF2404	0.25	-1.2
2,423,876	+		GFF2404	0.25	-2.2
2,423,889	+		GFF2404	0.25	-0.9
2,423,897	-		GFF2404	0.26	-2.2
2,423,930	+		GFF2404	0.27	-2.2
2,423,963	-		GFF2404	0.29	+0.4
2,424,051	+		GFF2404	0.33	-1.8
2,424,051	+		GFF2404	0.33	-2.7
2,424,057	-		GFF2404	0.33	-0.3
2,424,097	+		GFF2404	0.35	-2.4
2,424,097	+		GFF2404	0.35	-0.4
2,424,110	-		GFF2404	0.35	-1.9
2,424,110	-		GFF2404	0.35	-3.1
2,424,120	-		GFF2404	0.36	-1.4
2,424,131	-		GFF2404	0.36	-2.4
2,424,137	+		GFF2404	0.37	-1.5
2,424,140	-		GFF2404	0.37	-2.5
2,424,140	-		GFF2404	0.37	-1.7
2,424,161	+		GFF2404	0.38	-1.4
2,424,161	-		GFF2404	0.38	-2.0
2,424,171	-		GFF2404	0.38	-0.5
2,424,198	+		GFF2404	0.40	-0.7
2,424,206	+		GFF2404	0.40	-2.8
2,424,206	+		GFF2404	0.40	-2.1
2,424,206	+		GFF2404	0.40	-1.5
2,424,206	+		GFF2404	0.40	-1.9
2,424,206	-		GFF2404	0.40	-0.6
2,424,206	-		GFF2404	0.40	+0.0
2,424,214	-		GFF2404	0.40	-1.5
2,424,214	-		GFF2404	0.40	+0.2
2,424,214	-		GFF2404	0.40	-2.2
2,424,250	+		GFF2404	0.42	-1.3
2,424,250	+		GFF2404	0.42	-2.2
2,424,258	-		GFF2404	0.42	-0.3
2,424,274	-		GFF2404	0.43	-2.3
2,424,282	-		GFF2404	0.43	-1.8
2,424,288	-		GFF2404	0.44	-1.6
2,424,294	-		GFF2404	0.44	-1.5
2,424,296	+		GFF2404	0.44	-0.4
2,424,296	+		GFF2404	0.44	-1.6
2,424,296	+		GFF2404	0.44	+0.1
2,424,296	+		GFF2404	0.44	-1.8
2,424,296	+		GFF2404	0.44	-0.4
2,424,296	+		GFF2404	0.44	-0.7
2,424,296	+		GFF2404	0.44	-3.5
2,424,296	+		GFF2404	0.44	-1.0
2,424,302	-		GFF2404	0.44	-2.9
2,424,304	-		GFF2404	0.44	-1.9
2,424,304	-		GFF2404	0.44	-2.1
2,424,304	-		GFF2404	0.44	-3.6
2,424,304	-		GFF2404	0.44	+0.6
2,424,304	-		GFF2404	0.44	-2.2
2,424,304	-		GFF2404	0.44	-2.6
2,424,304	-		GFF2404	0.44	-1.0
2,424,304	-		GFF2404	0.44	-2.5
2,424,315	+		GFF2404	0.45	-0.5
2,424,324	-		GFF2404	0.45	-1.2
2,424,393	+		GFF2404	0.48	-2.0
2,424,393	+		GFF2404	0.48	-0.4
2,424,401	+		GFF2404	0.49	-1.7
2,424,401	-		GFF2404	0.49	-1.4
2,424,407	+		GFF2404	0.49	-0.9
2,424,407	+		GFF2404	0.49	-2.3
2,424,407	+		GFF2404	0.49	-1.5
2,424,407	+		GFF2404	0.49	-1.4
2,424,461	-		GFF2404	0.52	-1.4
2,424,467	-		GFF2404	0.52	-2.7
2,424,480	-		GFF2404	0.52	-1.2
2,424,492	+		GFF2404	0.53	-1.5
2,424,529	-		GFF2404	0.55	+1.4
2,424,539	-		GFF2404	0.55	-0.4
2,424,555	+		GFF2404	0.56	-2.1
2,424,557	+		GFF2404	0.56	-0.7
2,424,569	+		GFF2404	0.57	-2.6
2,424,610	-		GFF2404	0.58	-0.8
2,424,620	+		GFF2404	0.59	-0.6
2,424,620	-		GFF2404	0.59	-1.6
2,424,620	-		GFF2404	0.59	-1.4
2,424,621	-		GFF2404	0.59	-1.5
2,424,627	-		GFF2404	0.59	-2.0
2,424,642	+		GFF2404	0.60	-2.9
2,424,642	+		GFF2404	0.60	-3.7
2,424,642	+		GFF2404	0.60	-1.6
2,424,642	+		GFF2404	0.60	-1.2
2,424,642	+		GFF2404	0.60	-2.2
2,424,642	+		GFF2404	0.60	-1.2
2,424,642	+		GFF2404	0.60	+0.0
2,424,642	+		GFF2404	0.60	-2.0
2,424,642	+		GFF2404	0.60	-1.6
2,424,650	-		GFF2404	0.60	-2.8
2,424,674	-		GFF2404	0.61	-2.7
2,424,674	-		GFF2404	0.61	-0.6
2,424,717	-		GFF2404	0.63	-0.4
2,424,754	-		GFF2404	0.65	-2.9
2,424,789	-		GFF2404	0.67	-1.9
2,424,802	+		GFF2404	0.67	-1.9
2,424,802	+		GFF2404	0.67	-0.5
2,424,810	-		GFF2404	0.68	-2.9
2,424,815	+		GFF2404	0.68	-3.6
2,424,825	-		GFF2404	0.68	-1.9
2,424,827	-		GFF2404	0.68	-1.5
2,424,860	+		GFF2404	0.70	-2.2
2,424,860	+		GFF2404	0.70	-2.3
2,424,862	-		GFF2404	0.70	-2.4
2,424,868	-		GFF2404	0.70	-0.8
2,424,873	-		GFF2404	0.71	-2.3
2,424,883	+		GFF2404	0.71	-1.8
2,424,883	+		GFF2404	0.71	-1.7
2,424,891	-		GFF2404	0.71	-2.2
2,424,940	+		GFF2404	0.74	-1.7
2,424,940	+		GFF2404	0.74	-1.5
2,424,941	+		GFF2404	0.74	-1.4
2,424,967	-		GFF2404	0.75	-1.6
2,425,038	-		GFF2404	0.78	-1.2
2,425,104	+		GFF2404	0.81	-0.5
2,425,104	+		GFF2404	0.81	-2.2
2,425,104	+		GFF2404	0.81	-1.7
2,425,104	+		GFF2404	0.81	-0.4
2,425,104	+		GFF2404	0.81	-1.4
2,425,104	+		GFF2404	0.81	-0.2
2,425,104	+		GFF2404	0.81	-2.4
2,425,104	+		GFF2404	0.81	-0.7
2,425,104	+		GFF2404	0.81	-0.8
2,425,112	-		GFF2404	0.81	-2.8
2,425,112	-		GFF2404	0.81	-2.1
2,425,112	-		GFF2404	0.81	-0.5
2,425,163	-		GFF2404	0.84	-0.4
2,425,168	-		GFF2404	0.84	-1.9
2,425,173	-		GFF2404	0.84	-3.4
2,425,193	+		GFF2404	0.85	-1.6
2,425,193	+		GFF2404	0.85	-1.8
2,425,229	+		GFF2404	0.87	-1.6
2,425,229	+		GFF2404	0.87	+0.2
2,425,229	+		GFF2404	0.87	-1.7
2,425,229	+		GFF2404	0.87	-1.2
2,425,229	+		GFF2404	0.87	-0.7
2,425,229	+		GFF2404	0.87	+0.6
2,425,229	+		GFF2404	0.87	-1.8
2,425,229	+		GFF2404	0.87	-2.0
2,425,237	-		GFF2404	0.87	-1.9
2,425,237	-		GFF2404	0.87	-3.4
2,425,237	-		GFF2404	0.87	-2.4
2,425,311	+				-1.7
2,425,311	+				-1.2
2,425,336	-				-1.9
2,425,353	+				-2.3
2,425,353	+				-1.2
2,425,356	-				-0.6
2,425,361	-				-2.8
2,425,361	-				+0.5
2,425,361	-				-0.3
2,425,361	-				-0.5
2,425,412	+				-0.6
2,425,415	-				-2.1
2,425,468	+				-1.4
2,425,481	+				-1.2
2,425,487	-				-0.4
2,425,502	-				+0.4
2,425,509	+				-0.5
2,425,509	+				+0.5
2,425,528	+				-0.8
2,425,533	+				+0.2
2,425,536	-				-1.2
2,425,570	+				-1.8
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