Strain Fitness in Sphingobium sp. HT1-2 around GFF2306

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,330,148	-		GFF2303	0.86	-0.2
2,330,148	-		GFF2303	0.86	-0.4
2,330,152	+		GFF2303	0.86	-1.0
2,330,152	+		GFF2303	0.86	-0.0
2,330,152	+		GFF2303	0.86	-0.1
2,330,152	+		GFF2303	0.86	-0.0
2,330,152	+		GFF2303	0.86	-2.0
2,330,160	-		GFF2303	0.87	+0.8
2,330,160	-		GFF2303	0.87	-0.4
2,330,162	+		GFF2303	0.87	-1.0
2,330,169	-		GFF2303	0.87	+0.4
2,330,170	-		GFF2303	0.88	-1.1
2,330,170	-		GFF2303	0.88	+1.0
2,330,170	-		GFF2303	0.88	-1.2
2,330,201	+				-0.0
2,330,228	-				-0.6
2,330,230	+				-0.4
2,330,243	+				-1.8
2,330,243	+				-0.9
2,330,243	+				-1.7
2,330,243	+				-1.3
2,330,243	+				+0.7
2,330,243	+				+0.4
2,330,251	-				-0.7
2,330,251	-				+0.2
2,330,251	-				-1.0
2,330,261	-				+1.6
2,330,274	+				-1.0
2,330,274	+				-0.2
2,330,274	+				-1.4
2,330,274	+				+0.8
2,330,274	+				-0.0
2,330,277	-				-0.4
2,330,282	-				-0.7
2,330,282	-				-0.9
2,330,282	-				-1.0
2,330,282	-				+0.6
2,330,282	-				+0.2
2,330,347	+				-2.4
2,330,357	-				+0.2
2,330,358	+				+0.3
2,330,377	+				+0.5
2,330,379	+				-1.7
2,330,379	+				-0.2
2,330,379	+				+0.5
2,330,385	-				-1.3
2,330,385	-				+1.9
2,330,385	-				+0.8
2,330,385	-				+0.4
2,330,385	-				+0.1
2,330,385	-				-1.5
2,330,387	-				-0.0
2,330,387	-				-1.0
2,330,413	-		GFF2304	0.11	+0.7
2,330,418	+		GFF2304	0.12	-0.5
2,330,434	-		GFF2304	0.15	+1.3
2,330,466	+		GFF2304	0.21	+0.5
2,330,517	+		GFF2304	0.30	-0.3
2,330,532	-		GFF2304	0.33	+0.0
2,330,537	-		GFF2304	0.34	-0.7
2,330,537	-		GFF2304	0.34	-0.9
2,330,552	+		GFF2304	0.37	-0.3
2,330,565	+		GFF2304	0.39	-1.0
2,330,576	+		GFF2304	0.41	-2.4
2,330,584	-		GFF2304	0.43	+0.9
2,330,584	-		GFF2304	0.43	+0.9
2,330,585	-		GFF2304	0.43	-1.6
2,330,586	+		GFF2304	0.43	-2.4
2,330,586	+		GFF2304	0.43	+0.6
2,330,594	-		GFF2304	0.45	-0.4
2,330,594	-		GFF2304	0.45	-0.0
2,330,625	-		GFF2304	0.50	+0.1
2,330,656	-		GFF2304	0.56	-0.4
2,330,657	+		GFF2304	0.56	-0.3
2,330,665	-		GFF2304	0.58	-1.0
2,330,665	-		GFF2304	0.58	-1.6
2,330,669	+		GFF2304	0.59	+0.9
2,330,675	+		GFF2304	0.60	+0.3
2,330,675	+		GFF2304	0.60	+1.1
2,330,677	-		GFF2304	0.60	-0.5
2,330,722	+		GFF2304	0.69	-0.6
2,330,728	-		GFF2304	0.70	-0.4
2,330,730	+		GFF2304	0.70	+0.7
2,330,730	+		GFF2304	0.70	+0.4
2,330,733	-		GFF2304	0.71	-2.4
2,330,738	-		GFF2304	0.72	-2.8
2,330,738	-		GFF2304	0.72	-0.9
2,330,747	+		GFF2304	0.73	+0.2
2,330,765	+		GFF2304	0.77	-1.2
2,330,765	+		GFF2304	0.77	-0.3
2,330,789	-		GFF2304	0.81	+0.4
2,330,791	+		GFF2304	0.81	+0.4
2,330,791	+		GFF2304	0.81	-0.1
2,330,791	+		GFF2304	0.81	+0.5
2,330,791	+		GFF2304	0.81	-0.9
2,330,791	+		GFF2304	0.81	-0.2
2,330,796	+		GFF2304	0.82	+0.3
2,330,797	-		GFF2304	0.82	-1.3
2,330,799	-		GFF2304	0.83	-0.6
2,330,799	-		GFF2304	0.83	-1.4
2,330,799	-		GFF2304	0.83	+1.2
2,330,799	-		GFF2304	0.83	-1.8
2,330,799	-		GFF2304	0.83	-0.0
2,330,799	-		GFF2304	0.83	+0.9
2,330,799	-		GFF2304	0.83	-0.5
2,330,799	-		GFF2304	0.83	+1.4
2,330,801	+		GFF2304	0.83	-1.7
2,330,823	+		GFF2304	0.87	-2.2
2,330,823	-		GFF2304	0.87	+0.3
2,330,826	+		GFF2304	0.88	-0.5
2,330,828	+		GFF2304	0.88	-1.3
2,330,828	+		GFF2304	0.88	-0.7
2,330,834	+		GFF2304	0.89	-1.0
2,330,834	+		GFF2304	0.89	-0.3
2,330,839	+				+0.7
2,330,839	+				-0.2
2,330,842	-				-2.7
2,330,842	-				+0.3
2,330,842	-				-0.8
2,330,847	-				-0.5
2,330,847	-				+0.9
2,330,867	-				+0.7
2,330,898	+				-3.0
2,330,917	+				-1.4
2,330,926	+				+0.4
2,330,931	+				-0.3
2,330,970	-		GFF2305	0.26	-2.8
2,331,005	-		GFF2305	0.57	+0.1
2,331,005	-		GFF2305	0.57	+0.2
2,331,024	+		GFF2305	0.74	+0.0
2,331,024	+		GFF2305	0.74	-0.1
2,331,026	+		GFF2305	0.75	+0.1
2,331,032	-		GFF2305	0.81	-0.2
2,331,032	-		GFF2305	0.81	-0.6
2,331,032	-		GFF2305	0.81	-0.7
2,331,032	-		GFF2305	0.81	+1.1
2,331,034	+		GFF2305	0.82	+0.1
2,331,034	+		GFF2305	0.82	-0.4
2,331,034	+		GFF2305	0.82	-2.3
2,331,034	+		GFF2305	0.82	+0.5
2,331,034	+		GFF2305	0.82	+0.3
2,331,042	-				+0.9
2,331,042	-				-0.0
2,331,042	-				-0.0
2,331,042	-				-1.0
2,331,049	-				-1.8
2,331,083	+				+0.0
2,331,089	-				-1.0
2,331,104	+				-0.5
2,331,109	+				-0.5
2,331,139	+				-1.3
2,331,139	+				-0.7
2,331,139	+				-0.1
2,331,139	+				-0.7
2,331,139	+				-0.6
2,331,139	+				-0.8
2,331,147	-				-0.2
2,331,147	-				+0.2
2,331,147	-				-1.8
2,331,147	-				-1.3
2,331,147	-				-0.5
2,331,147	-				-0.5
2,331,147	-				+0.6
2,331,147	-				+0.3
2,331,147	-				-1.0
2,331,147	-				+0.3
2,331,147	-				-1.0
2,331,147	-				-1.1
2,331,147	-				+0.4
2,331,147	-				-0.1
2,331,147	-				+1.2
2,331,147	-				-2.0
2,331,147	-				-0.3
2,331,156	+				-2.6
2,331,156	+				-2.3
2,331,161	-		GFF2306	0.10	+0.1
2,331,167	+		GFF2306	0.13	-1.2
2,331,167	+		GFF2306	0.13	-0.5
2,331,167	+		GFF2306	0.13	-0.7
2,331,172	+		GFF2306	0.16	-0.4
2,331,172	+		GFF2306	0.16	-0.4
2,331,172	+		GFF2306	0.16	-0.4
2,331,175	-		GFF2306	0.17	+1.3
2,331,177	+		GFF2306	0.18	+0.6
2,331,177	+		GFF2306	0.18	+0.2
2,331,180	-		GFF2306	0.20	-1.3
2,331,180	-		GFF2306	0.20	-2.0
2,331,185	-		GFF2306	0.22	-1.2
2,331,185	-		GFF2306	0.22	+0.7
2,331,185	-		GFF2306	0.22	-1.7
2,331,187	+		GFF2306	0.23	-3.1
2,331,187	+		GFF2306	0.23	+0.9
2,331,187	+		GFF2306	0.23	-0.2
2,331,187	+		GFF2306	0.23	+0.6
2,331,187	+		GFF2306	0.23	-0.1
2,331,187	+		GFF2306	0.23	+0.4
2,331,187	+		GFF2306	0.23	+0.8
2,331,187	+		GFF2306	0.23	+0.9
2,331,187	+		GFF2306	0.23	+0.2
2,331,187	+		GFF2306	0.23	-0.4
2,331,195	-		GFF2306	0.27	+0.2
2,331,195	-		GFF2306	0.27	-0.3
2,331,195	-		GFF2306	0.27	-1.5
2,331,195	-		GFF2306	0.27	-2.0
2,331,195	-		GFF2306	0.27	-0.0
2,331,195	-		GFF2306	0.27	-0.3
2,331,195	-		GFF2306	0.27	+0.1
2,331,195	-		GFF2306	0.27	+0.2
2,331,195	-		GFF2306	0.27	-1.0
2,331,195	-		GFF2306	0.27	+0.1
2,331,195	-		GFF2306	0.27	-2.1
2,331,195	-		GFF2306	0.27	-0.5
2,331,197	+		GFF2306	0.28	-2.7
2,331,200	-		GFF2306	0.30	+0.3
2,331,219	+		GFF2306	0.39	-2.4
2,331,222	+		GFF2306	0.41	-2.8
2,331,227	-		GFF2306	0.43	+1.7
2,331,230	-		GFF2306	0.45	+0.6
2,331,232	-		GFF2306	0.46	-0.9
2,331,264	+		GFF2306	0.62	+0.1
2,331,276	-		GFF2306	0.68	-0.4
2,331,306	-		GFF2306	0.83	-0.2
2,331,306	-		GFF2306	0.83	-0.7
2,331,319	+				-0.5
2,331,324	-				-1.5
2,331,334	+				+0.1
2,331,334	+				+0.7
2,331,341	+				-1.0
2,331,341	+				-0.3
2,331,341	-				+0.1
2,331,346	+				+1.1
2,331,346	+				-0.9
2,331,346	+				-2.0
2,331,346	+				-0.1
2,331,346	+				-1.0
2,331,346	+				-0.1
2,331,348	+				-1.4
2,331,354	-				+0.6
2,331,354	-				-2.0
2,331,354	-				-2.1
2,331,359	+				+1.3
2,331,364	+				+1.1
2,331,372	-				+1.2
2,331,377	-				-1.0
2,331,383	+				+0.4
2,331,388	+				+0.7
2,331,402	+				+0.3
2,331,405	-				+0.1
2,331,423	+				+1.1
2,331,456	+				-1.0
2,331,458	+				-0.7
2,331,458	+				+1.0
2,331,461	-				-0.1
2,331,475	+				-0.3
2,331,481	+				-0.2
2,331,481	+				+0.7
2,331,489	-				-2.0
2,331,489	-				+0.1
2,331,489	-				+0.9
2,331,489	-				-1.3
2,331,489	-				-1.7
2,331,489	-				-1.6
2,331,503	-				+0.0
2,331,503	-				+1.1
2,331,503	-				+0.5
2,331,514	-				+0.5
2,331,514	-				-1.7
2,331,525	+				-2.1
2,331,527	+				-0.2
2,331,531	+				+0.0
2,331,535	-				-0.5
2,331,535	-				+0.5
2,331,535	-				-0.5
2,331,539	-				+0.4
2,331,540	-				-0.1
2,331,613	+		GFF2307	0.11	-0.7
2,331,636	-		GFF2307	0.13	+0.2
2,331,643	+		GFF2307	0.13	+0.8
2,331,666	+		GFF2307	0.15	+0.5
2,331,671	+		GFF2307	0.15	+0.7
2,331,689	+		GFF2307	0.17	-1.3
2,331,689	+		GFF2307	0.17	+0.1
2,331,689	+		GFF2307	0.17	-0.3
2,331,696	+		GFF2307	0.17	-1.9
2,331,697	-		GFF2307	0.17	+0.6
2,331,697	-		GFF2307	0.17	+0.2
2,331,697	-		GFF2307	0.17	-0.3
2,331,703	-		GFF2307	0.18	-1.3
2,331,703	-		GFF2307	0.18	-1.3
2,331,710	-		GFF2307	0.18	-0.2
2,331,723	+		GFF2307	0.19	-1.0
2,331,726	-		GFF2307	0.20	-1.3
2,331,731	-		GFF2307	0.20	+0.1
2,331,745	+		GFF2307	0.21	-0.8
2,331,753	-		GFF2307	0.22	-0.7
2,331,753	-		GFF2307	0.22	-1.3
2,331,758	+		GFF2307	0.22	+0.4
2,331,758	+		GFF2307	0.22	+0.6
2,331,762	+		GFF2307	0.22	+0.4
2,331,784	-		GFF2307	0.24	-1.7
2,331,789	-		GFF2307	0.24	+0.3
2,331,808	+		GFF2307	0.26	+1.7
2,331,824	-		GFF2307	0.27	-1.7
2,331,829	-		GFF2307	0.27	+0.6
2,331,862	+		GFF2307	0.30	-1.5
2,331,867	+		GFF2307	0.30	-0.9
2,331,867	+		GFF2307	0.30	+0.3
2,331,867	+		GFF2307	0.30	-2.4
2,331,867	+		GFF2307	0.30	-0.4
2,331,875	-		GFF2307	0.31	-0.9
2,331,875	-		GFF2307	0.31	-0.7
2,331,875	-		GFF2307	0.31	+0.6
2,331,927	+		GFF2307	0.35	+1.5
2,331,943	-		GFF2307	0.36	+0.9
2,331,959	+		GFF2307	0.37	-0.1
2,331,969	+		GFF2307	0.38	+0.2
2,331,969	+		GFF2307	0.38	-2.4
2,331,972	-		GFF2307	0.38	+0.7
2,331,977	-		GFF2307	0.39	+0.7
2,332,009	-		GFF2307	0.41	+0.8
2,332,014	-		GFF2307	0.42	+0.4
2,332,057	+		GFF2307	0.45	+0.6
2,332,083	+		GFF2307	0.47	-0.0
2,332,090	+		GFF2307	0.47	+0.3
2,332,090	+		GFF2307	0.47	-1.4
2,332,098	-		GFF2307	0.48	+0.8
2,332,108	+		GFF2307	0.49	-0.6
2,332,127	-		GFF2307	0.50	+1.9
2,332,132	+		GFF2307	0.51	-1.7
2,332,145	+		GFF2307	0.52	-0.2
2,332,153	-		GFF2307	0.52	-0.9
2,332,155	+		GFF2307	0.52	+0.7
2,332,163	-		GFF2307	0.53	-2.0
2,332,168	+		GFF2307	0.53	-2.9
2,332,168	+		GFF2307	0.53	-1.0
2,332,168	+		GFF2307	0.53	+0.0
2,332,176	-		GFF2307	0.54	+1.1
2,332,176	-		GFF2307	0.54	-0.1
2,332,176	-		GFF2307	0.54	-0.8
2,332,176	-		GFF2307	0.54	-1.3
2,332,176	-		GFF2307	0.54	+0.6
2,332,176	-		GFF2307	0.54	+0.0
2,332,176	-		GFF2307	0.54	-0.5
2,332,176	-		GFF2307	0.54	-0.2
2,332,176	-		GFF2307	0.54	-0.9
2,332,176	-		GFF2307	0.54	-1.8
2,332,181	-		GFF2307	0.54	-3.0
2,332,181	-		GFF2307	0.54	-0.0
2,332,181	-		GFF2307	0.54	-1.0
2,332,190	+		GFF2307	0.55	+0.5
2,332,198	-		GFF2307	0.56	+0.6
2,332,203	+		GFF2307	0.56	-0.1
2,332,204	-		GFF2307	0.56	+0.8
2,332,248	+		GFF2307	0.59	-1.2
2,332,266	+		GFF2307	0.61	-0.5
2,332,276	-		GFF2307	0.61	+1.3
2,332,284	-		GFF2307	0.62	-0.5
2,332,287	+		GFF2307	0.62	-1.3
2,332,303	-		GFF2307	0.64	-1.5
2,332,303	-		GFF2307	0.64	+0.7
2,332,329	-		GFF2307	0.66	-1.1
2,332,329	-		GFF2307	0.66	-0.5